Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:15:16 (2348610): wrapper (7.7.26015): starting
04:15:16 (2348610): wrapper: running run_atlas (--nthreads 4)
[2025-12-05 04:15:16] Arguments: --nthreads 4
[2025-12-05 04:15:16] Threads: 4
[2025-12-05 04:15:16] Checking for CVMFS
[2025-12-05 04:15:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-05 04:15:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-05 04:15:16] Running cvmfs_config stat atlas.cern.ch
[2025-12-05 04:15:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-05 04:15:16] 2.9.2.0 3127036 23744 101468 153639 3 76 36749649 36864000 0 130560 0 9525939 99.963 998797 1284 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-05 04:15:16] CVMFS is ok
[2025-12-05 04:15:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-05 04:15:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-05 04:15:16] Further information can be found at the LHC@home message board.
[2025-12-05 04:15:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-05 04:15:16] Checking for apptainer binary...
[2025-12-05 04:15:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-05 04:15:16] Running /usr/bin/apptainer --version
[2025-12-05 04:15:16] apptainer version 1.4.1-1.1
[2025-12-05 04:15:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-05 04:15:16] thA334
[2025-12-05 04:15:16] apptainer works
[2025-12-05 04:15:16] Set ATHENA_PROC_NUMBER=4
[2025-12-05 04:15:16] Set ATHENA_CORE_NUMBER=4
[2025-12-05 04:15:16] Starting ATLAS job with PandaID=6905456778
[2025-12-05 04:15:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 10:02:55]  *** The last 200 lines of the pilot log: ***
[2025-12-05 10:02:55] 2025-12-05 09:01:56,172 | INFO     | zombie collector waiting for pid 2359617
[2025-12-05 10:02:55] 2025-12-05 09:01:56,172 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-05 10:02:55] 2025-12-05 09:01:56,172 | INFO     | collected zombie processes
[2025-12-05 10:02:55] 2025-12-05 09:01:56,172 | INFO     | will attempt to kill all subprocesses of pid=2359617
[2025-12-05 10:02:55] 2025-12-05 09:01:56,215 | INFO     | process IDs to be killed: [2359617] (in reverse order)
[2025-12-05 10:02:55] 2025-12-05 09:01:56,246 | WARNING  | found no corresponding commands to process id(s)
[2025-12-05 10:02:55] 2025-12-05 09:01:56,246 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-05 10:02:55] 2025-12-05 09:01:56,248 | INFO     | did not find any defunct processes belonging to 2359617
[2025-12-05 10:02:55] 2025-12-05 09:01:56,249 | INFO     | did not find any defunct processes belonging to 2359617
[2025-12-05 10:02:55] 2025-12-05 09:01:56,249 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-05 10:02:55] 2025-12-05 09:01:56,250 | INFO     | ready for new job
[2025-12-05 10:02:55] 2025-12-05 09:01:56,250 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-05 10:02:55] 2025-12-05 09:01:56,251 | INFO     | ***************************************
[2025-12-05 10:02:55] 2025-12-05 09:01:56,251 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-05 10:02:55] 2025-12-05 09:01:56,251 | INFO     | ***************************************
[2025-12-05 10:02:55] 2025-12-05 09:01:56,251 | INFO     | 
[2025-12-05 10:02:55] 2025-12-05 09:01:56,251 | INFO     | architecture information:
[2025-12-05 10:02:55] 2025-12-05 09:01:56,252 | INFO     | executing command: cat /etc/os-release
[2025-12-05 10:02:55] 2025-12-05 09:01:56,264 | INFO     | cat /etc/os-release:
[2025-12-05 10:02:55] NAME="CentOS Linux"
[2025-12-05 10:02:55] VERSION="7 (Core)"
[2025-12-05 10:02:55] ID="centos"
[2025-12-05 10:02:55] ID_LIKE="rhel fedora"
[2025-12-05 10:02:55] VERSION_ID="7"
[2025-12-05 10:02:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 10:02:55] ANSI_COLOR="0;31"
[2025-12-05 10:02:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 10:02:55] HOME_URL="https://www.centos.org/"
[2025-12-05 10:02:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 10:02:55] 
[2025-12-05 10:02:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 10:02:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 10:02:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 10:02:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 10:02:55] 
[2025-12-05 10:02:55] 2025-12-05 09:01:56,264 | INFO     | ***************************************
[2025-12-05 10:02:55] 2025-12-05 09:01:56,768 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-05 10:02:55] 2025-12-05 09:01:56,784 | INFO     | sufficient remaining disk space (222698668032 B)
[2025-12-05 10:02:55] 2025-12-05 09:01:56,785 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 10:02:55] 2025-12-05 09:01:56,785 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 10:02:55] 2025-12-05 09:01:56,785 | INFO     | update_server=False
[2025-12-05 10:02:55] 2025-12-05 09:01:56,785 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 10:02:55] 2025-12-05 09:01:56,785 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 10:02:55] 2025-12-05 09:01:56,817 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-05 10:02:55] 2025-12-05 09:01:56,817 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-05 10:02:55] 2025-12-05 09:01:56,818 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 10:02:55] 2025-12-05 09:01:56,818 | INFO     | will abort loop
[2025-12-05 10:02:55] 2025-12-05 09:01:56,879 | INFO     | all job control threads have been joined
[2025-12-05 10:02:55] 2025-12-05 09:01:57,230 | INFO     | all data control threads have been joined
[2025-12-05 10:02:55] 2025-12-05 09:01:57,235 | INFO     | all payload control threads have been joined
[2025-12-05 10:02:55] 2025-12-05 09:01:57,790 | INFO     | [job] retrieve thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:01:57,791 | INFO     | [job] queue monitor thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:01:57,823 | INFO     | [job] job monitor thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:01:57,838 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:01:57,885 | INFO     | [job] control thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:01:57,975 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:01:57,995 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 10:02:55] 2025-12-05 09:01:58,236 | INFO     | [data] control thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:01:58,240 | INFO     | [payload] control thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:01:58,261 | INFO     | [job] validate thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:01:58,379 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:01:58,452 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:01:58,787 | INFO     | [payload] validate_post thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:01:58,878 | INFO     | [data] copytool_in thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:01:58,902 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 10:02:55] 2025-12-05 09:01:59,066 | INFO     | [payload] failed_post thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:02:00,002 | INFO     | [data] copytool_out thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:02:02,909 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 10:02:55] 2025-12-05 09:02:26,335 | INFO     | PID=2352402 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-05 10:02:55] 2025-12-05 09:02:26,335 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 10:02:55] 2025-12-05 09:02:26,335 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 10:02:55] 2025-12-05 09:02:26,335 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 10:02:55] 2025-12-05 09:02:49,166 | INFO     | [monitor] cgroup control has ended
[2025-12-05 10:02:55] 2025-12-05 09:02:50,213 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139633734219584)>', '<ExcThread(monitor, started 139632859666176)>']
[2025-12-05 10:02:55] 2025-12-05 09:02:50,464 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 10:02:55] 2025-12-05 09:02:50,464 | INFO     | [monitor] control thread has ended
[2025-12-05 10:02:55] 2025-12-05 09:02:55,229 | INFO     | all workflow threads have been joined
[2025-12-05 10:02:55] 2025-12-05 09:02:55,230 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 10:02:55] 2025-12-05 09:02:55,230 | INFO     | traces error code: 0
[2025-12-05 10:02:55] 2025-12-05 09:02:55,230 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 10:02:55] 2025-12-05 09:02:55,300 [wrapper] ==== pilot stdout END ====
[2025-12-05 10:02:55] 2025-12-05 09:02:55,304 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 10:02:55] 2025-12-05 09:02:55,307 [wrapper] pilotpid: 2352402
[2025-12-05 10:02:55] 2025-12-05 09:02:55,311 [wrapper] Pilot exit status: 0
[2025-12-05 10:02:55] 2025-12-05 09:02:55,321 [wrapper] pandaids: 6905456778
[2025-12-05 10:02:55] 2025-12-05 09:02:55,344 [wrapper] cleanup supervisor_pilot 2400169 2352403
[2025-12-05 10:02:55] 2025-12-05 09:02:55,347 [wrapper] Test setup, not cleaning
[2025-12-05 10:02:55] 2025-12-05 09:02:55,351 [wrapper] apfmon messages muted
[2025-12-05 10:02:55] 2025-12-05 09:02:55,354 [wrapper] ==== wrapper stdout END ====
[2025-12-05 10:02:55] 2025-12-05 09:02:55,357 [wrapper] ==== wrapper stderr END ====
[2025-12-05 10:02:55]  *** Error codes and diagnostics ***
[2025-12-05 10:02:55]     "exeErrorCode": 0,
[2025-12-05 10:02:55]     "exeErrorDiag": "",
[2025-12-05 10:02:55]     "pilotErrorCode": 0,
[2025-12-05 10:02:55]     "pilotErrorDiag": "",
[2025-12-05 10:02:55]  *** Listing of results directory ***
[2025-12-05 10:02:55] total 1057780
[2025-12-05 10:02:55] -rwx------ 1 boinc boinc     36292 Nov 30 01:21 runpilot2-wrapper.sh
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc    576529 Nov 30 01:24 pilot3.tar.gz
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc      5112 Nov 30 01:27 queuedata.json
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc       100 Dec  5 04:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 10:02:55] -rwxr-xr-x 1 boinc boinc      7986 Dec  5 04:15 run_atlas
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc       105 Dec  5 04:15 job.xml
[2025-12-05 10:02:55] -rw-r--r-- 2 boinc boinc 375462071 Dec  5 04:15 EVNT.47530720._000114.pool.root.1
[2025-12-05 10:02:55] -rw-r--r-- 2 boinc boinc    590125 Dec  5 04:15 input.tar.gz
[2025-12-05 10:02:55] -rw-r--r-- 2 boinc boinc     15847 Dec  5 04:15 start_atlas.sh
[2025-12-05 10:02:55] drwxrwx--x 2 boinc boinc      4096 Dec  5 04:15 shared
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc         0 Dec  5 04:15 boinc_setup_complete
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc      6369 Dec  5 04:15 init_data.xml
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc         0 Dec  5 04:15 boinc_lockfile
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc      2876 Dec  5 04:15 pandaJob.out
[2025-12-05 10:02:55] -rw------- 1 boinc boinc    985572 Dec  5 04:15 agis_schedconf.cvmfs.json
[2025-12-05 10:02:55] drwx------ 5 boinc boinc      4096 Dec  5 04:15 pilot3
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc       531 Dec  5 09:57 boinc_task_state.xml
[2025-12-05 10:02:55] -rw------- 1 boinc boinc 695303672 Dec  5 10:01 HITS.47530725._002610.pool.root.1
[2025-12-05 10:02:55] -rw------- 1 boinc boinc      1028 Dec  5 10:01 memory_monitor_summary.json
[2025-12-05 10:02:55] -rw------- 1 boinc boinc   1516240 Dec  5 10:01 agis_ddmendpoints.agis.ALL.json
[2025-12-05 10:02:55] -rw------- 1 boinc boinc   1291220 Dec  5 10:01 log.47530725._002610.job.log.tgz.1
[2025-12-05 10:02:55] -rw------- 1 boinc boinc     28239 Dec  5 10:01 heartbeat.json
[2025-12-05 10:02:55] -rw------- 1 boinc boinc        95 Dec  5 10:02 pilot_heartbeat.json
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc      8192 Dec  5 10:02 boinc_mmap_file
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc        28 Dec  5 10:02 wrapper_checkpoint.txt
[2025-12-05 10:02:55] -rw------- 1 boinc boinc      4938 Dec  5 10:02 pilotlog.txt
[2025-12-05 10:02:55] -rw------- 1 boinc boinc   2941103 Dec  5 10:02 log.47530725._002610.job.log.1
[2025-12-05 10:02:55] -rw------- 1 boinc boinc       353 Dec  5 10:02 output.list
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc       620 Dec  5 10:02 runtime_log
[2025-12-05 10:02:55] -rw------- 1 boinc boinc   4270080 Dec  5 10:02 result.tar.gz
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc      8898 Dec  5 10:02 runtime_log.err
[2025-12-05 10:02:55] -rw------- 1 boinc boinc       665 Dec  5 10:02 kyGKDm4Mkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBaPKDmvcnoim.diag
[2025-12-05 10:02:55] -rw-r--r-- 1 boinc boinc     10970 Dec  5 10:02 stderr.txt
[2025-12-05 10:02:55] HITS file was successfully produced:
[2025-12-05 10:02:55] -rw------- 1 boinc boinc 695303672 Dec  5 10:01 shared/HITS.pool.root.1
[2025-12-05 10:02:55]  *** Contents of shared directory: ***
[2025-12-05 10:02:55] total 1050448
[2025-12-05 10:02:55] -rw-r--r-- 2 boinc boinc 375462071 Dec  5 04:15 ATLAS.root_0
[2025-12-05 10:02:55] -rw-r--r-- 2 boinc boinc    590125 Dec  5 04:15 input.tar.gz
[2025-12-05 10:02:55] -rw-r--r-- 2 boinc boinc     15847 Dec  5 04:15 start_atlas.sh
[2025-12-05 10:02:55] -rw------- 1 boinc boinc 695303672 Dec  5 10:01 HITS.pool.root.1
[2025-12-05 10:02:55] -rw------- 1 boinc boinc   4270080 Dec  5 10:02 result.tar.gz
10:02:56 (2348610): run_atlas exited; CPU time 81040.981477
10:02:56 (2348610): called boinc_finish(0)

</stderr_txt>
]]>

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