Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:23:23 (10610): wrapper (7.7.26015): starting
00:23:23 (10610): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:23:23] Arguments: --nthreads 8
[2025-12-03 00:23:23] Threads: 8
[2025-12-03 00:23:23] Checking for CVMFS
[2025-12-03 00:23:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:23:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:23:23] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:23:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:23:24] 2.11.0.0 5006 74846 93080 153574 0 112 2216966 4096000 3532 130560 2 7158371 99.358 7736109 595 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 00:23:24] CVMFS is ok
[2025-12-03 00:23:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:23:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:23:24] Further information can be found at the LHC@home message board.
[2025-12-03 00:23:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:23:24] Checking for apptainer binary...
[2025-12-03 00:23:24] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 00:23:24] apptainer is not installed, using version from CVMFS
[2025-12-03 00:23:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:23:24] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945663/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node011
[2025-12-03 00:23:24] apptainer works
[2025-12-03 00:23:24] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:23:24] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:23:24] Starting ATLAS job with PandaID=6893840254
[2025-12-03 00:23:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945663/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 04:49:01]  *** The last 200 lines of the pilot log: ***
[2025-12-03 04:49:01] 2025-12-03 03:48:03,787 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 04:49:01] 2025-12-03 03:48:03,792 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2596.7550781249997
[2025-12-03 04:49:01] 2025-12-03 03:48:03,797 | INFO     | using path: /tmp/job_10945663/atlas/pilot/slots/0/PanDA_Pilot-6893840254/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 04:49:01] 2025-12-03 03:48:03,797 | INFO     | extracted standard info from prmon json
[2025-12-03 04:49:01] 2025-12-03 03:48:03,797 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 04:49:01] 2025-12-03 03:48:03,797 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 04:49:01] 2025-12-03 03:48:03,799 | INFO     | fitting pss+swap vs Time
[2025-12-03 04:49:01] 2025-12-03 03:48:03,799 | INFO     | sum of square deviations: 5449944045.0
[2025-12-03 04:49:01] 2025-12-03 03:48:03,800 | INFO     | sum of deviations: 109267543260.99998
[2025-12-03 04:49:01] 2025-12-03 03:48:03,800 | INFO     | mean x: 1764725725.5
[2025-12-03 04:49:01] 2025-12-03 03:48:03,800 | INFO     | mean y: 2899996.4
[2025-12-03 04:49:01] 2025-12-03 03:48:03,801 | INFO     | intersect: -35378609054.46417
[2025-12-03 04:49:01] 2025-12-03 03:48:03,801 | INFO     | chi2: 2.7454917015733336
[2025-12-03 04:49:01] 2025-12-03 03:48:03,801 | INFO     | sum of square deviations: 5141528960.0
[2025-12-03 04:49:01] 2025-12-03 03:48:03,802 | INFO     | sum of deviations: 149714980340.0001
[2025-12-03 04:49:01] 2025-12-03 03:48:03,802 | INFO     | mean x: 1764725573.0
[2025-12-03 04:49:01] 2025-12-03 03:48:03,802 | INFO     | mean y: 2919807.1137254904
[2025-12-03 04:49:01] 2025-12-03 03:48:03,802 | INFO     | intersect: -51383711781.01029
[2025-12-03 04:49:01] 2025-12-03 03:48:03,802 | INFO     | chi2: 1.4424671380167307
[2025-12-03 04:49:01] 2025-12-03 03:48:03,802 | INFO     | current chi2=1.4424671380167307 (change=47.460517284022046 %)
[2025-12-03 04:49:01] 2025-12-03 03:48:03,802 | INFO     | sum of square deviations: 4844974562.5
[2025-12-03 04:49:01] 2025-12-03 03:48:03,803 | INFO     | sum of deviations: 144432083727.5
[2025-12-03 04:49:01] 2025-12-03 03:48:03,803 | INFO     | mean x: 1764725420.5
[2025-12-03 04:49:01] 2025-12-03 03:48:03,803 | INFO     | mean y: 2917090.588
[2025-12-03 04:49:01] 2025-12-03 03:48:03,803 | INFO     | intersect: -52604783197.97335
[2025-12-03 04:49:01] 2025-12-03 03:48:03,803 | INFO     | chi2: 1.4407643384834878
[2025-12-03 04:49:01] 2025-12-03 03:48:03,804 | INFO     | current chi2=1.4407643384834878 (change=0.11804771757809472 %)
[2025-12-03 04:49:01] 2025-12-03 03:48:03,804 | INFO     | right removable region: 249
[2025-12-03 04:49:01] 2025-12-03 03:48:03,804 | INFO     | sum of square deviations: 5141528960.0
[2025-12-03 04:49:01] 2025-12-03 03:48:03,805 | INFO     | sum of deviations: 60556126973.00001
[2025-12-03 04:49:01] 2025-12-03 03:48:03,805 | INFO     | mean x: 1764725878.0
[2025-12-03 04:49:01] 2025-12-03 03:48:03,805 | INFO     | mean y: 2923897.231372549
[2025-12-03 04:49:01] 2025-12-03 03:48:03,805 | INFO     | intersect: -20781742526.335155
[2025-12-03 04:49:01] 2025-12-03 03:48:03,805 | INFO     | chi2: 1.3606404650483073
[2025-12-03 04:49:01] 2025-12-03 03:48:03,805 | INFO     | current chi2=1.3606404650483073 (change=50.44091867884439 %)
[2025-12-03 04:49:01] 2025-12-03 03:48:03,805 | INFO     | sum of square deviations: 4844974562.5
[2025-12-03 04:49:01] 2025-12-03 03:48:03,806 | INFO     | sum of deviations: 48649918253.499985
[2025-12-03 04:49:01] 2025-12-03 03:48:03,806 | INFO     | mean x: 1764726030.5
[2025-12-03 04:49:01] 2025-12-03 03:48:03,806 | INFO     | mean y: 2930014.676
[2025-12-03 04:49:01] 2025-12-03 03:48:03,806 | INFO     | intersect: -17717240858.491207
[2025-12-03 04:49:01] 2025-12-03 03:48:03,806 | INFO     | chi2: 1.3368161140660904
[2025-12-03 04:49:01] 2025-12-03 03:48:03,806 | INFO     | current chi2=1.3368161140660904 (change=1.750965930692872 %)
[2025-12-03 04:49:01] 2025-12-03 03:48:03,806 | INFO     | left removable region: 20
[2025-12-03 04:49:01] 2025-12-03 03:48:03,807 | INFO     | sum of square deviations: 3723716330.0
[2025-12-03 04:49:01] 2025-12-03 03:48:03,807 | INFO     | sum of deviations: 67633600855.0
[2025-12-03 04:49:01] 2025-12-03 03:48:03,807 | INFO     | mean x: 1764726000.0
[2025-12-03 04:49:01] 2025-12-03 03:48:03,807 | INFO     | mean y: 2958421.4934497816
[2025-12-03 04:49:01] 2025-12-03 03:48:03,807 | INFO     | intersect: -32049637245.062256
[2025-12-03 04:49:01] 2025-12-03 03:48:03,808 | INFO     | chi2: 0.008389457194964922
[2025-12-03 04:49:01] 2025-12-03 03:48:03,808 | INFO     | current memory leak: 18.16 B/s (using 229 data points, chi2=0.01)
[2025-12-03 04:49:01] 2025-12-03 03:48:03,808 | INFO     | could have reported an average CPU frequency of 3026 MHz (12 samples)
[2025-12-03 04:49:01] 2025-12-03 03:48:03,808 | INFO     | ..............................
[2025-12-03 04:49:01] 2025-12-03 03:48:03,808 | INFO     | . Timing measurements:
[2025-12-03 04:49:01] 2025-12-03 03:48:03,808 | INFO     | . get job = 0 s
[2025-12-03 04:49:01] 2025-12-03 03:48:03,808 | INFO     | . initial setup = 1 s
[2025-12-03 04:49:01] 2025-12-03 03:48:03,808 | INFO     | . payload setup = 2 s
[2025-12-03 04:49:01] 2025-12-03 03:48:03,808 | INFO     | . stage-in = 0 s
[2025-12-03 04:49:01] 2025-12-03 03:48:03,808 | INFO     | . payload execution = 15853 s
[2025-12-03 04:49:01] 2025-12-03 03:48:03,808 | INFO     | . stage-out = 1 s
[2025-12-03 04:49:01] 2025-12-03 03:48:03,808 | INFO     | . log creation = 0 s
[2025-12-03 04:49:01] 2025-12-03 03:48:03,808 | INFO     | ..............................
[2025-12-03 04:49:01] 2025-12-03 03:48:03,856 | INFO     | 
[2025-12-03 04:49:01] 2025-12-03 03:48:03,856 | INFO     | job summary report
[2025-12-03 04:49:01] 2025-12-03 03:48:03,856 | INFO     | --------------------------------------------------
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | PanDA job id: 6893840254
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | task id: 47523449
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | errors: (none)
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | pilot state: finished 
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | transexitcode: 0
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | exeerrorcode: 0
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | exeerrordiag: 
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | exitcode: 0
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | exitmsg: OK
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | cpuconsumptiontime: 120280 s
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | nevents: 1000
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | neventsw: 0
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | pid: 21146
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | pgrp: 21146
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | corecount: 8
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | event service: False
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | sizes: {0: 2284441, 2: 2284703, 11: 2284731, 15857: 2317008, 15858: 2326088, 15863: 2326278}
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | --------------------------------------------------
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | 
[2025-12-03 04:49:01] 2025-12-03 03:48:03,857 | INFO     | executing command: ls -lF /tmp/job_10945663/atlas/pilot/slots/0
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,867 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 04:49:01] 2025-12-03 03:48:03,868 | INFO     | job 6893840254 has completed (purged errors)
[2025-12-03 04:49:01] 2025-12-03 03:48:03,868 | INFO     | overall cleanup function is called
[2025-12-03 04:49:01] 2025-12-03 03:48:04,875 | INFO     | --- collectZombieJob: --- 10, [21146]
[2025-12-03 04:49:01] 2025-12-03 03:48:04,875 | INFO     | zombie collector waiting for pid 21146
[2025-12-03 04:49:01] 2025-12-03 03:48:04,875 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 04:49:01] 2025-12-03 03:48:04,875 | INFO     | collected zombie processes
[2025-12-03 04:49:01] 2025-12-03 03:48:04,875 | INFO     | will attempt to kill all subprocesses of pid=21146
[2025-12-03 04:49:01] 2025-12-03 03:48:04,981 | INFO     | process IDs to be killed: [21146] (in reverse order)
[2025-12-03 04:49:01] 2025-12-03 03:48:05,020 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 04:49:01] 2025-12-03 03:48:05,020 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 04:49:01] 2025-12-03 03:48:05,024 | INFO     | did not find any defunct processes belonging to 21146
[2025-12-03 04:49:01] 2025-12-03 03:48:05,027 | INFO     | did not find any defunct processes belonging to 21146
[2025-12-03 04:49:01] 2025-12-03 03:48:05,027 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 04:49:01] 2025-12-03 03:48:05,027 | INFO     | ready for new job
[2025-12-03 04:49:01] 2025-12-03 03:48:05,027 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 04:49:01] 2025-12-03 03:48:05,028 | INFO     | ***************************************
[2025-12-03 04:49:01] 2025-12-03 03:48:05,028 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 04:49:01] 2025-12-03 03:48:05,028 | INFO     | ***************************************
[2025-12-03 04:49:01] 2025-12-03 03:48:05,028 | INFO     | 
[2025-12-03 04:49:01] 2025-12-03 03:48:05,043 | INFO     | architecture information:
[2025-12-03 04:49:01] 2025-12-03 03:48:05,043 | INFO     | executing command: cat /etc/os-release
[2025-12-03 04:49:01] 2025-12-03 03:48:05,049 | INFO     | cat /etc/os-release:
[2025-12-03 04:49:01] NAME="CentOS Linux"
[2025-12-03 04:49:01] VERSION="7 (Core)"
[2025-12-03 04:49:01] ID="centos"
[2025-12-03 04:49:01] ID_LIKE="rhel fedora"
[2025-12-03 04:49:01] VERSION_ID="7"
[2025-12-03 04:49:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 04:49:01] ANSI_COLOR="0;31"
[2025-12-03 04:49:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 04:49:01] HOME_URL="https://www.centos.org/"
[2025-12-03 04:49:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 04:49:01] 
[2025-12-03 04:49:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 04:49:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 04:49:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 04:49:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 04:49:01] 
[2025-12-03 04:49:01] 2025-12-03 03:48:05,049 | INFO     | ***************************************
[2025-12-03 04:49:01] 2025-12-03 03:48:05,552 | INFO     | executing command: df -mP /tmp/job_10945663/atlas/pilot/slots/0
[2025-12-03 04:49:01] 2025-12-03 03:48:05,559 | INFO     | sufficient remaining disk space (222104125440 B)
[2025-12-03 04:49:01] 2025-12-03 03:48:05,560 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 04:49:01] 2025-12-03 03:48:05,560 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 04:49:01] 2025-12-03 03:48:05,560 | INFO     | update_server=False
[2025-12-03 04:49:01] 2025-12-03 03:48:05,560 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 04:49:01] 2025-12-03 03:48:05,560 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 04:49:01] 2025-12-03 03:48:05,560 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 04:49:01] 2025-12-03 03:48:05,560 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:49:01] 2025-12-03 03:48:05,718 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 04:49:01] 2025-12-03 03:48:05,718 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 04:49:01] 2025-12-03 03:48:05,718 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:49:01] 2025-12-03 03:48:05,718 | INFO     | will abort loop
[2025-12-03 04:49:01] 2025-12-03 03:48:06,565 | INFO     | [job] retrieve thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:06,565 | INFO     | [job] queue monitor thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:06,591 | INFO     | all data control threads have been joined
[2025-12-03 04:49:01] 2025-12-03 03:48:06,723 | INFO     | [job] job monitor thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:06,896 | INFO     | all payload control threads have been joined
[2025-12-03 04:49:01] 2025-12-03 03:48:06,913 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:06,958 | INFO     | [payload] validate_post thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:06,990 | INFO     | all job control threads have been joined
[2025-12-03 04:49:01] 2025-12-03 03:48:07,374 | INFO     | [payload] failed_post thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:07,480 | INFO     | [job] validate thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:07,546 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:07,565 | INFO     | [data] copytool_out thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:07,596 | INFO     | [data] control thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:07,901 | INFO     | [payload] control thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:07,911 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:07,993 | INFO     | [job] control thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:07,994 | INFO     | [data] copytool_in thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:09,565 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:16,600 | INFO     | job.realtimelogging is not enabled
[2025-12-03 04:49:01] 2025-12-03 03:48:17,605 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 04:49:01] 2025-12-03 03:48:36,506 | INFO     | PID=14548 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 04:49:01] 2025-12-03 03:48:36,506 | INFO     | .. there are 4 such processes running
[2025-12-03 04:49:01] 2025-12-03 03:48:36,506 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 04:49:01] 2025-12-03 03:48:36,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 04:49:01] 2025-12-03 03:48:36,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 04:49:01] 2025-12-03 03:48:54,855 | INFO     | [monitor] cgroup control has ended
[2025-12-03 04:49:01] 2025-12-03 03:48:55,860 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058717952)>']
[2025-12-03 04:49:01] 2025-12-03 03:48:56,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 04:49:01] 2025-12-03 03:48:56,606 | INFO     | [monitor] control thread has ended
[2025-12-03 04:49:01] 2025-12-03 03:49:00,885 | INFO     | all workflow threads have been joined
[2025-12-03 04:49:01] 2025-12-03 03:49:00,885 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 04:49:01] 2025-12-03 03:49:00,885 | INFO     | traces error code: 0
[2025-12-03 04:49:01] 2025-12-03 03:49:00,885 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 04:49:01] 2025-12-03 03:49:00,936 [wrapper] ==== pilot stdout END ====
[2025-12-03 04:49:01] 2025-12-03 03:49:00,937 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 04:49:01] 2025-12-03 03:49:00,939 [wrapper] pilotpid: 14548
[2025-12-03 04:49:01] 2025-12-03 03:49:00,940 [wrapper] Pilot exit status: 0
[2025-12-03 04:49:01] 2025-12-03 03:49:00,944 [wrapper] pandaids: 6893840254
[2025-12-03 04:49:01] 2025-12-03 03:49:00,969 [wrapper] cleanup supervisor_pilot 10006 14549
[2025-12-03 04:49:01] 2025-12-03 03:49:00,970 [wrapper] Test setup, not cleaning
[2025-12-03 04:49:01] 2025-12-03 03:49:00,971 [wrapper] apfmon messages muted
[2025-12-03 04:49:01] 2025-12-03 03:49:00,973 [wrapper] ==== wrapper stdout END ====
[2025-12-03 04:49:01] 2025-12-03 03:49:00,974 [wrapper] ==== wrapper stderr END ====
[2025-12-03 04:49:01]  *** Error codes and diagnostics ***
[2025-12-03 04:49:01]     "exeErrorCode": 0,
[2025-12-03 04:49:01]     "exeErrorDiag": "",
[2025-12-03 04:49:01]     "pilotErrorCode": 0,
[2025-12-03 04:49:01]     "pilotErrorDiag": "",
[2025-12-03 04:49:01]  *** Listing of results directory ***
[2025-12-03 04:49:01] total 1293472
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user    576529 Nov 20 11:06 pilot3.tar.gz
[2025-12-03 04:49:01] -rwx------ 1 mf493845 unix-user     36292 Nov 20 11:19 runpilot2-wrapper.sh
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user      5112 Nov 20 11:21 queuedata.json
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user       100 Dec  2 22:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 04:49:01] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 22:39 run_atlas
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user       105 Dec  2 22:39 job.xml
[2025-12-03 04:49:01] -rw-r--r-- 2 mf493845 unix-user 406815399 Dec  3 00:23 EVNT.47493127._000170.pool.root.1
[2025-12-03 04:49:01] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:23 start_atlas.sh
[2025-12-03 04:49:01] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 00:23 shared
[2025-12-03 04:49:01] -rw-r--r-- 2 mf493845 unix-user    590098 Dec  3 00:23 input.tar.gz
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user      6391 Dec  3 00:23 init_data.xml
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user         0 Dec  3 00:23 boinc_setup_complete
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user      8192 Dec  3 00:23 boinc_mmap_file
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user         0 Dec  3 00:23 boinc_lockfile
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user      2786 Dec  3 00:23 pandaJob.out
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user    989284 Dec  3 00:23 agis_schedconf.cvmfs.json
[2025-12-03 04:49:01] drwx------ 5 mf493845 unix-user       440 Dec  3 00:23 pilot3
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user 906080485 Dec  3 04:47 HITS.47523449._001700.pool.root.1
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user      1030 Dec  3 04:47 memory_monitor_summary.json
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user   1516240 Dec  3 04:47 agis_ddmendpoints.agis.ALL.json
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user   1560944 Dec  3 04:47 log.47523449._001700.job.log.tgz.1
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user      8575 Dec  3 04:48 heartbeat.json
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user        95 Dec  3 04:48 pilot_heartbeat.json
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user      5093 Dec  3 04:49 pilotlog.txt
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user   2302739 Dec  3 04:49 log.47523449._001700.job.log.1
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user       353 Dec  3 04:49 output.list
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user       620 Dec  3 04:49 runtime_log
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user   3880960 Dec  3 04:49 result.tar.gz
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user      9221 Dec  3 04:49 runtime_log.err
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user       650 Dec  3 04:49 8dlLDmgwGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzNGKDmVVV0An.diag
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user     21627 Dec  3 04:49 stderr.txt
[2025-12-03 04:49:01] HITS file was successfully produced:
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user 906080485 Dec  3 04:47 shared/HITS.pool.root.1
[2025-12-03 04:49:01]  *** Contents of shared directory: ***
[2025-12-03 04:49:01] total 1286520
[2025-12-03 04:49:01] -rw-r--r-- 2 mf493845 unix-user 406815399 Dec  3 00:23 ATLAS.root_0
[2025-12-03 04:49:01] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 00:23 start_atlas.sh
[2025-12-03 04:49:01] -rw-r--r-- 2 mf493845 unix-user    590098 Dec  3 00:23 input.tar.gz
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user 906080485 Dec  3 04:47 HITS.pool.root.1
[2025-12-03 04:49:01] -rw------- 1 mf493845 unix-user   3880960 Dec  3 04:49 result.tar.gz
04:49:02 (10610): run_atlas exited; CPU time 120478.696451
04:49:02 (10610): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN