Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:24:39 (637627): wrapper (7.7.26015): starting
14:24:39 (637627): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 14:24:40] Arguments: --nthreads 8
[2025-12-02 14:24:40] Threads: 8
[2025-12-02 14:24:40] Checking for CVMFS
[2025-12-02 14:24:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 14:24:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 14:24:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 14:24:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 14:24:42] 2.13.3.0 12357 39059 305908 153567 2 498 17397404 32503809 59315 16776704 0 625200835 99.633 551605799 45386 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 14:24:42] CVMFS is ok
[2025-12-02 14:24:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 14:24:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 14:24:42] Further information can be found at the LHC@home message board.
[2025-12-02 14:24:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 14:24:42] Checking for apptainer binary...
[2025-12-02 14:24:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 14:24:42] Running /usr/bin/apptainer --version
[2025-12-02 14:24:42] apptainer version 1.4.4-1.el9
[2025-12-02 14:24:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 14:24:43] c8-7-2.aglt2.org
[2025-12-02 14:24:43] apptainer works
[2025-12-02 14:24:43] Set ATHENA_PROC_NUMBER=8
[2025-12-02 14:24:43] Set ATHENA_CORE_NUMBER=8
[2025-12-02 14:24:43] Starting ATLAS job with PandaID=6905025706
[2025-12-02 14:24:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 21:40:16]  *** The last 200 lines of the pilot log: ***
[2025-12-02 21:40:16] 2025-12-03 01:21:11,237 | INFO     | .. there are 88 such processes running
[2025-12-02 21:40:16] 2025-12-03 01:21:12,255 | INFO     | time since job start (21303s) is within the limit (172800.0s)
[2025-12-02 21:40:16] 2025-12-03 01:21:13,619 | INFO     | monitor loop #1083: job 0:6905025706 is in state 'finished'
[2025-12-02 21:40:16] 2025-12-03 01:21:13,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 21:40:16] 2025-12-03 01:21:14,269 | INFO     | time since job start (21305s) is within the limit (172800.0s)
[2025-12-02 21:40:16] 2025-12-03 01:21:15,963 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 21:40:16] 2025-12-03 01:21:15,975 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9925156249997
[2025-12-02 21:40:16] 2025-12-03 01:21:16,050 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6905025706/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 21:40:16] 2025-12-03 01:21:16,060 | INFO     | extracted standard info from prmon json
[2025-12-02 21:40:16] 2025-12-03 01:21:16,060 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 21:40:16] 2025-12-03 01:21:16,060 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 21:40:16] 2025-12-03 01:21:16,060 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-02 21:40:16] 2025-12-03 01:21:16,060 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-02 21:40:16] 2025-12-03 01:21:16,068 | INFO     | fitting pss+swap vs Time
[2025-12-02 21:40:16] 2025-12-03 01:21:16,068 | INFO     | sum of square deviations: 12844219840.234116
[2025-12-02 21:40:16] 2025-12-03 01:21:16,079 | INFO     | sum of deviations: -19263050094.809223
[2025-12-02 21:40:16] 2025-12-03 01:21:16,079 | INFO     | mean x: 1764714261.5809247
[2025-12-02 21:40:16] 2025-12-03 01:21:16,079 | INFO     | mean y: 2620779.028901734
[2025-12-02 21:40:16] 2025-12-03 01:21:16,079 | INFO     | intersect: 2649241566.1765313
[2025-12-02 21:40:16] 2025-12-03 01:21:16,079 | INFO     | chi2: 4.362598486813786
[2025-12-02 21:40:16] 2025-12-03 01:21:16,080 | INFO     | sum of square deviations: 12295408787.700943
[2025-12-02 21:40:16] 2025-12-03 01:21:16,091 | INFO     | sum of deviations: 2778267927.152498
[2025-12-02 21:40:16] 2025-12-03 01:21:16,091 | INFO     | mean x: 1764714109.0821114
[2025-12-02 21:40:16] 2025-12-03 01:21:16,092 | INFO     | mean y: 2626832.5659824046
[2025-12-02 21:40:16] 2025-12-03 01:21:16,092 | INFO     | intersect: -396127588.2516994
[2025-12-02 21:40:16] 2025-12-03 01:21:16,092 | INFO     | chi2: 3.7002988508819556
[2025-12-02 21:40:16] 2025-12-03 01:21:16,092 | INFO     | current chi2=3.7002988508819556 (change=15.18131081587431 %)
[2025-12-02 21:40:16] 2025-12-03 01:21:16,092 | INFO     | right removable region: 340
[2025-12-02 21:40:16] 2025-12-03 01:21:16,092 | INFO     | sum of square deviations: 12295391707.700943
[2025-12-02 21:40:16] 2025-12-03 01:21:16,094 | INFO     | sum of deviations: -122806988524.11731
[2025-12-02 21:40:16] 2025-12-03 01:21:16,094 | INFO     | mean x: 1764714414.0821114
[2025-12-02 21:40:16] 2025-12-03 01:21:16,094 | INFO     | mean y: 2649491.718475073
[2025-12-02 21:40:16] 2025-12-03 01:21:16,094 | INFO     | intersect: 17628705493.072952
[2025-12-02 21:40:16] 2025-12-03 01:21:16,094 | INFO     | chi2: 1.1987673983094684
[2025-12-02 21:40:16] 2025-12-03 01:21:16,094 | INFO     | current chi2=1.1987673983094684 (change=72.52171149985922 %)
[2025-12-02 21:40:16] 2025-12-03 01:21:16,094 | INFO     | sum of square deviations: 11762424337.666725
[2025-12-02 21:40:16] 2025-12-03 01:21:16,112 | INFO     | sum of deviations: -128054278195.49998
[2025-12-02 21:40:16] 2025-12-03 01:21:16,112 | INFO     | mean x: 1764714566.5833333
[2025-12-02 21:40:16] 2025-12-03 01:21:16,112 | INFO     | mean y: 2650973.4821428573
[2025-12-02 21:40:16] 2025-12-03 01:21:16,112 | INFO     | intersect: 19214613028.044453
[2025-12-02 21:40:16] 2025-12-03 01:21:16,113 | INFO     | chi2: 1.1529400086232129
[2025-12-02 21:40:16] 2025-12-03 01:21:16,113 | INFO     | current chi2=1.1529400086232129 (change=3.8228758765780975 %)
[2025-12-02 21:40:16] 2025-12-03 01:21:16,113 | INFO     | left removable region: 20
[2025-12-02 21:40:16] 2025-12-03 01:21:16,113 | INFO     | sum of square deviations: 10160824685.55006
[2025-12-02 21:40:16] 2025-12-03 01:21:16,114 | INFO     | sum of deviations: -75850067981.6625
[2025-12-02 21:40:16] 2025-12-03 01:21:16,115 | INFO     | mean x: 1764714688.5875
[2025-12-02 21:40:16] 2025-12-03 01:21:16,115 | INFO     | mean y: 2648757.184375
[2025-12-02 21:40:16] 2025-12-03 01:21:16,115 | INFO     | intersect: 13176159101.07966
[2025-12-02 21:40:16] 2025-12-03 01:21:16,132 | INFO     | monitor loop #1084: job 0:6905025706 is in state 'finished'
[2025-12-02 21:40:16] 2025-12-03 01:21:16,132 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 21:40:16] 2025-12-03 01:21:16,132 | INFO     | chi2: 0.4061834644004255
[2025-12-02 21:40:16] 2025-12-03 01:21:16,133 | INFO     | current memory leak: -7.46 B/s (using 320 data points, chi2=0.41)
[2025-12-02 21:40:16] 2025-12-03 01:21:16,133 | INFO     | could have reported an average CPU frequency of 3799 MHz (15 samples)
[2025-12-02 21:40:16] 2025-12-03 01:21:16,133 | INFO     | ..............................
[2025-12-02 21:40:16] 2025-12-03 01:21:16,133 | INFO     | . Timing measurements:
[2025-12-02 21:40:16] 2025-12-03 01:21:16,133 | INFO     | . get job = 0 s
[2025-12-02 21:40:16] 2025-12-03 01:21:16,133 | INFO     | . initial setup = 5 s
[2025-12-02 21:40:16] 2025-12-03 01:21:16,133 | INFO     | . payload setup = 53 s
[2025-12-02 21:40:16] 2025-12-03 01:21:16,133 | INFO     | . stage-in = 0 s
[2025-12-02 21:40:16] 2025-12-03 01:21:16,133 | INFO     | . payload execution = 21110 s
[2025-12-02 21:40:16] 2025-12-03 01:21:16,134 | INFO     | . stage-out = 5 s
[2025-12-02 21:40:16] 2025-12-03 01:21:16,134 | INFO     | . log creation = 1 s
[2025-12-02 21:40:16] 2025-12-03 01:21:16,134 | INFO     | ..............................
[2025-12-02 21:40:16] 2025-12-03 01:21:16,328 | INFO     | time since job start (21307s) is within the limit (172800.0s)
[2025-12-02 21:40:16] 2025-12-03 01:21:16,834 | INFO     | 
[2025-12-02 21:40:17] 2025-12-03 01:21:16,834 | INFO     | job summary report
[2025-12-02 21:40:17] 2025-12-03 01:21:16,834 | INFO     | --------------------------------------------------
[2025-12-02 21:40:17] 2025-12-03 01:21:16,834 | INFO     | PanDA job id: 6905025706
[2025-12-02 21:40:17] 2025-12-03 01:21:16,834 | INFO     | task id: 47523969
[2025-12-02 21:40:17] 2025-12-03 01:21:16,834 | INFO     | errors: (none)
[2025-12-02 21:40:17] 2025-12-03 01:21:16,834 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 21:40:17] 2025-12-03 01:21:16,834 | INFO     | pilot state: finished 
[2025-12-02 21:40:17] 2025-12-03 01:21:16,834 | INFO     | transexitcode: 0
[2025-12-02 21:40:17] 2025-12-03 01:21:16,834 | INFO     | exeerrorcode: 0
[2025-12-02 21:40:17] 2025-12-03 01:21:16,834 | INFO     | exeerrordiag: 
[2025-12-02 21:40:17] 2025-12-03 01:21:16,835 | INFO     | exitcode: 0
[2025-12-02 21:40:17] 2025-12-03 01:21:16,835 | INFO     | exitmsg: OK
[2025-12-02 21:40:17] 2025-12-03 01:21:16,835 | INFO     | cpuconsumptiontime: 63593 s
[2025-12-02 21:40:17] 2025-12-03 01:21:16,835 | INFO     | nevents: 400
[2025-12-02 21:40:17] 2025-12-03 01:21:16,835 | INFO     | neventsw: 0
[2025-12-02 21:40:17] 2025-12-03 01:21:16,835 | INFO     | pid: 698191
[2025-12-02 21:40:17] 2025-12-03 01:21:16,835 | INFO     | pgrp: 698191
[2025-12-02 21:40:17] 2025-12-03 01:21:16,835 | INFO     | corecount: 8
[2025-12-02 21:40:17] 2025-12-03 01:21:16,835 | INFO     | event service: False
[2025-12-02 21:40:17] 2025-12-03 01:21:16,835 | INFO     | sizes: {0: 2283891, 11: 2283891, 22: 2283919, 33: 2283947, 37: 2284265, 44: 2284293, 21168: 2317932, 21169: 2317931, 21175: 2326985, 21176: 2327041, 21221: 2327235
[2025-12-02 21:40:17] 2025-12-03 01:21:16,835 | INFO     | --------------------------------------------------
[2025-12-02 21:40:17] 2025-12-03 01:21:16,835 | INFO     | 
[2025-12-02 21:40:17] 2025-12-03 01:21:16,835 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-12-02 21:40:17] 2025-12-03 01:21:17,114 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,114 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | job 6905025706 has completed (purged errors)
[2025-12-02 21:40:17] 2025-12-03 01:21:17,115 | INFO     | overall cleanup function is called
[2025-12-02 21:40:17] 2025-12-03 01:21:18,133 | INFO     | --- collectZombieJob: --- 10, [698191]
[2025-12-02 21:40:17] 2025-12-03 01:21:18,133 | INFO     | zombie collector waiting for pid 698191
[2025-12-02 21:40:17] 2025-12-03 01:21:18,133 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 21:40:17] 2025-12-03 01:21:18,133 | INFO     | collected zombie processes
[2025-12-02 21:40:17] 2025-12-03 01:21:18,133 | INFO     | will attempt to kill all subprocesses of pid=698191
[2025-12-02 21:40:17] 2025-12-03 01:21:20,454 | INFO     | process IDs to be killed: [698191] (in reverse order)
[2025-12-02 21:40:17] 2025-12-03 01:21:21,127 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 21:40:17] 2025-12-03 01:21:21,127 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 21:40:17] 2025-12-03 01:21:21,369 | INFO     | did not find any defunct processes belonging to 698191
[2025-12-02 21:40:17] 2025-12-03 01:21:21,555 | INFO     | did not find any defunct processes belonging to 698191
[2025-12-02 21:40:17] 2025-12-03 01:21:21,562 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 21:40:17] 2025-12-03 01:21:21,563 | INFO     | ready for new job
[2025-12-02 21:40:17] 2025-12-03 01:21:21,563 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 21:40:17] 2025-12-03 01:21:21,568 | INFO     | ***************************************
[2025-12-02 21:40:17] 2025-12-03 01:21:21,568 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 21:40:17] 2025-12-03 01:21:21,568 | INFO     | ***************************************
[2025-12-02 21:40:17] 2025-12-03 01:21:21,568 | INFO     | 
[2025-12-02 21:40:17] 2025-12-03 01:21:21,586 | INFO     | architecture information:
[2025-12-02 21:40:17] 2025-12-03 01:21:21,591 | INFO     | executing command: cat /etc/os-release
[2025-12-02 21:40:17] 2025-12-03 01:21:21,664 | INFO     | cat /etc/os-release:
[2025-12-02 21:40:17] NAME="CentOS Linux"
[2025-12-02 21:40:17] VERSION="7 (Core)"
[2025-12-02 21:40:17] ID="centos"
[2025-12-02 21:40:17] ID_LIKE="rhel fedora"
[2025-12-02 21:40:17] VERSION_ID="7"
[2025-12-02 21:40:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 21:40:17] ANSI_COLOR="0;31"
[2025-12-02 21:40:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 21:40:17] HOME_URL="https://www.centos.org/"
[2025-12-02 21:40:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 21:40:17] 
[2025-12-02 21:40:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 21:40:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 21:40:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 21:40:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 21:40:17] 
[2025-12-02 21:40:17] 2025-12-03 01:21:21,664 | INFO     | ***************************************
[2025-12-02 21:40:17] 2025-12-03 01:21:22,186 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-12-02 21:40:17] 2025-12-03 01:21:22,274 | INFO     | sufficient remaining disk space (84044414976 B)
[2025-12-02 21:40:17] 2025-12-03 01:21:22,275 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 21:40:17] 2025-12-03 01:21:22,275 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 21:40:17] 2025-12-03 01:21:22,275 | INFO     | update_server=False
[2025-12-02 21:40:17] 2025-12-03 01:21:22,275 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 21:40:17] 2025-12-03 01:21:22,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 21:40:17] 2025-12-03 01:21:22,275 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 21:40:17] 2025-12-03 01:21:22,275 | INFO     | aborting loop
[2025-12-02 21:40:17] 2025-12-03 01:21:22,276 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 21:40:17] 2025-12-03 01:21:22,287 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 21:40:17] 2025-12-03 01:21:22,850 | INFO     | all job control threads have been joined
[2025-12-02 21:40:17] 2025-12-03 01:21:22,881 | INFO     | all data control threads have been joined
[2025-12-02 21:40:17] 2025-12-03 01:21:22,951 | INFO     | all payload control threads have been joined
[2025-12-02 21:40:17] 2025-12-03 01:21:23,281 | INFO     | [job] retrieve thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:23,282 | INFO     | [job] job monitor thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:23,293 | INFO     | [job] queue monitor thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:23,403 | INFO     | [job] validate thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:23,408 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:23,414 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:23,856 | INFO     | [job] control thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:23,865 | INFO     | [payload] failed_post thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:23,887 | INFO     | [data] control thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:23,960 | INFO     | [payload] control thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:24,282 | INFO     | [data] copytool_out thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:24,312 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:24,361 | INFO     | [data] copytool_in thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:24,534 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:24,746 | INFO     | [payload] validate_post thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:26,287 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 21:40:17] 2025-12-03 01:21:47,697 | INFO     | [monitor] cgroup control has ended
[2025-12-02 21:40:17] 2025-12-03 01:21:48,601 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139986554775360)>', '<ExcThread(monitor, started 139985936185088)>']
[2025-12-02 21:40:17] 2025-12-03 01:21:50,853 | INFO     | PID=664558 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 21:40:17] 2025-12-03 01:21:50,854 | INFO     | .. there are 89 such processes running
[2025-12-02 21:40:17] 2025-12-03 01:21:50,854 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 21:40:17] 2025-12-03 01:21:50,854 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 21:40:17] 2025-12-03 01:21:50,855 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 21:40:17] 2025-12-03 01:21:50,855 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 21:40:17] 2025-12-03 01:21:50,855 | INFO     | [monitor] control thread has ended
[2025-12-02 21:40:17] 2025-12-03 01:21:53,627 | INFO     | all workflow threads have been joined
[2025-12-02 21:40:17] 2025-12-03 01:21:53,627 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 21:40:17] 2025-12-03 01:21:53,627 | INFO     | traces error code: 0
[2025-12-02 21:40:17] 2025-12-03 01:21:53,627 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 21:40:17] 2025-12-03 01:21:54,055 [wrapper] ==== pilot stdout END ====
[2025-12-02 21:40:17] 2025-12-03 01:21:54,076 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 21:40:17] 2025-12-03 01:21:54,105 [wrapper] pilotpid: 664558
[2025-12-02 21:40:17] 2025-12-03 01:21:54,135 [wrapper] Pilot exit status: 0
[2025-12-02 21:40:17] 2025-12-03 01:21:54,259 [wrapper] pandaids: 6905025706
[2025-12-02 21:40:17] 2025-12-03 01:21:55,790 [wrapper] cleanup supervisor_pilot  866541 664559
[2025-12-02 21:40:17] 2025-12-03 01:21:55,877 [wrapper] Test setup, not cleaning
[2025-12-02 21:40:17] 2025-12-03 01:21:55,892 [wrapper] apfmon messages muted
[2025-12-02 21:40:17] 2025-12-03 01:21:55,916 [wrapper] ==== wrapper stdout END ====
[2025-12-02 21:40:17] 2025-12-03 01:21:55,941 [wrapper] ==== wrapper stderr END ====
[2025-12-02 21:40:17]  *** Error codes and diagnostics ***
[2025-12-02 21:40:17]     "exeErrorCode": 0,
[2025-12-02 21:40:17]     "exeErrorDiag": "",
[2025-12-02 21:40:17]     "pilotErrorCode": 0,
[2025-12-02 21:40:17]     "pilotErrorDiag": "",
[2025-12-02 21:40:17]  *** Listing of results directory ***
[2025-12-02 21:40:17] total 619120
[2025-12-02 21:40:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 19:16 pilot3.tar.gz
[2025-12-02 21:40:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 19:17 queuedata.json
[2025-12-02 21:40:17] -rwx------. 1 boincer umatlas     36292 Nov 29 19:17 runpilot2-wrapper.sh
[2025-12-02 21:40:17] -rw-r--r--. 1 boincer umatlas       100 Dec  2 14:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 21:40:17] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 14:24 run_atlas
[2025-12-02 21:40:17] -rw-r--r--. 1 boincer umatlas       105 Dec  2 14:24 job.xml
[2025-12-02 21:40:17] -rw-r--r--. 2 boincer umatlas 292348019 Dec  2 14:24 EVNT.47523965._000008.pool.root.1
[2025-12-02 21:40:17] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 14:24 start_atlas.sh
[2025-12-02 21:40:17] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 14:24 shared
[2025-12-02 21:40:17] -rw-r--r--. 2 boincer umatlas    589954 Dec  2 14:24 input.tar.gz
[2025-12-02 21:40:17] -rw-r--r--. 1 boincer umatlas         0 Dec  2 14:24 boinc_lockfile
[2025-12-02 21:40:17] -rw-r--r--. 1 boincer umatlas      2604 Dec  2 14:24 pandaJob.out
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas        57 Dec  2 14:24 setup.sh.local
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas    989224 Dec  2 14:26 agis_schedconf.cvmfs.json
[2025-12-02 21:40:17] drwx------. 5 boincer umatlas      4096 Dec  2 14:26 pilot3
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas 331914898 Dec  2 20:18 HITS.47523969._000165.pool.root.1
[2025-12-02 21:40:17] -rw-r--r--. 1 boincer umatlas       530 Dec  2 20:18 boinc_task_state.xml
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas      1039 Dec  2 20:20 memory_monitor_summary.json
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas   1516240 Dec  2 20:20 agis_ddmendpoints.agis.ALL.json
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas    523634 Dec  2 20:20 log.47523969._000165.job.log.tgz.1
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas      7769 Dec  2 20:21 heartbeat.json
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas        95 Dec  2 20:21 pilot_heartbeat.json
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas      4823 Dec  2 20:21 pilotlog.txt
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas   2376572 Dec  2 20:21 log.47523969._000165.job.log.1
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas       357 Dec  2 20:21 output.list
[2025-12-02 21:40:17] -rw-r--r--. 1 boincer umatlas       620 Dec  2 20:21 runtime_log
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas   2918400 Dec  2 20:21 result.tar.gz
[2025-12-02 21:40:17] -rw-r--r--. 1 boincer umatlas      9333 Dec  2 20:21 runtime_log.err
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas       656 Dec  2 20:21 5gzNDmdJkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpFPKDmSD2lFn.diag
[2025-12-02 21:40:17] -rw-r--r--. 1 boincer umatlas      7171 Dec  2 21:40 init_data.xml
[2025-12-02 21:40:17] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 21:40 boinc_mmap_file
[2025-12-02 21:40:17] -rw-r--r--. 1 boincer umatlas        28 Dec  2 21:40 wrapper_checkpoint.txt
[2025-12-02 21:40:17] -rw-r--r--. 1 boincer umatlas     21508 Dec  2 21:40 stderr.txt
[2025-12-02 21:40:17] HITS file was successfully produced:
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas 331914898 Dec  2 20:18 shared/HITS.pool.root.1
[2025-12-02 21:40:17]  *** Contents of shared directory: ***
[2025-12-02 21:40:17] total 613092
[2025-12-02 21:40:17] -rw-r--r--. 2 boincer umatlas 292348019 Dec  2 14:24 ATLAS.root_0
[2025-12-02 21:40:17] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 14:24 start_atlas.sh
[2025-12-02 21:40:17] -rw-r--r--. 2 boincer umatlas    589954 Dec  2 14:24 input.tar.gz
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas 331914898 Dec  2 20:18 HITS.pool.root.1
[2025-12-02 21:40:17] -rw-------. 1 boincer umatlas   2918400 Dec  2 20:21 result.tar.gz
21:40:18 (637627): run_atlas exited; CPU time 64618.765215
21:40:18 (637627): called boinc_finish(0)

</stderr_txt>
]]>

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