Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
22:11:24 (24038): wrapper (7.7.26015): starting
22:11:24 (24038): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 22:11:24] Arguments: --nthreads 8
[2025-12-02 22:11:24] Threads: 8
[2025-12-02 22:11:24] Checking for CVMFS
[2025-12-02 22:11:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 22:11:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 22:11:24] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 22:11:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 22:11:26] 2.11.0.0 4245 74497 84128 153568 2 197 3298894 4096000 1017 130560 1 8478445 99.655 4692933 491 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 22:11:26] CVMFS is ok
[2025-12-02 22:11:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 22:11:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 22:11:26] Further information can be found at the LHC@home message board.
[2025-12-02 22:11:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 22:11:26] Checking for apptainer binary...
[2025-12-02 22:11:26] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 22:11:26] apptainer is not installed, using version from CVMFS
[2025-12-02 22:11:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 22:11:28] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945529/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node142
[2025-12-02 22:11:28] apptainer works
[2025-12-02 22:11:28] Set ATHENA_PROC_NUMBER=8
[2025-12-02 22:11:28] Set ATHENA_CORE_NUMBER=8
[2025-12-02 22:11:28] Starting ATLAS job with PandaID=6905166392
[2025-12-02 22:11:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945529/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 02:04:20]  *** The last 200 lines of the pilot log: ***
[2025-12-03 02:04:20] 2025-12-03 01:03:12,723 | INFO     | log transfer has been attempted: DONE
[2025-12-03 02:04:20] 2025-12-03 01:03:12,723 | INFO     | job 6905166392 has finished - writing final server update
[2025-12-03 02:04:20] 2025-12-03 01:03:12,723 | INFO     | total number of processed events: 1000 (read)
[2025-12-03 02:04:20] 2025-12-03 01:03:12,723 | INFO     | executing command: lscpu
[2025-12-03 02:04:20] 2025-12-03 01:03:12,755 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 02:04:20] 2025-12-03 01:03:13,365 | INFO     | monitor loop #1014: job 0:6905166392 is in state 'finished'
[2025-12-03 02:04:20] 2025-12-03 01:03:13,365 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:04:20] 2025-12-03 01:03:13,798 | INFO     | time since job start (13881s) is within the limit (172800.0s)
[2025-12-03 02:04:20] 2025-12-03 01:03:14,508 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 02:04:20] 2025-12-03 01:03:14,526 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2537.331484375
[2025-12-03 02:04:20] 2025-12-03 01:03:14,531 | INFO     | using path: /tmp/job_10945529/atlas/pilot/slots/0/PanDA_Pilot-6905166392/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 02:04:20] 2025-12-03 01:03:14,531 | INFO     | extracted standard info from prmon json
[2025-12-03 02:04:20] 2025-12-03 01:03:14,531 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 02:04:20] 2025-12-03 01:03:14,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 02:04:20] 2025-12-03 01:03:14,534 | INFO     | fitting pss+swap vs Time
[2025-12-03 02:04:20] 2025-12-03 01:03:14,534 | INFO     | sum of square deviations: 3675146117.0
[2025-12-03 02:04:20] 2025-12-03 01:03:14,534 | INFO     | sum of deviations: 322444327044.49994
[2025-12-03 02:04:20] 2025-12-03 01:03:14,535 | INFO     | mean x: 1764716853.5
[2025-12-03 02:04:20] 2025-12-03 01:03:14,535 | INFO     | mean y: 3457249.6359649124
[2025-12-03 02:04:20] 2025-12-03 01:03:14,535 | INFO     | intersect: -154826560424.70483
[2025-12-03 02:04:20] 2025-12-03 01:03:14,535 | INFO     | chi2: 7.007895872733791
[2025-12-03 02:04:20] 2025-12-03 01:03:14,535 | INFO     | sum of square deviations: 3438620752.0
[2025-12-03 02:04:20] 2025-12-03 01:03:14,536 | INFO     | sum of deviations: 371298972887.99994
[2025-12-03 02:04:20] 2025-12-03 01:03:14,536 | INFO     | mean x: 1764716701.0
[2025-12-03 02:04:20] 2025-12-03 01:03:14,536 | INFO     | mean y: 3488408.860986547
[2025-12-03 02:04:20] 2025-12-03 01:03:14,536 | INFO     | intersect: -190548929486.7429
[2025-12-03 02:04:20] 2025-12-03 01:03:14,536 | INFO     | chi2: 5.348775730480387
[2025-12-03 02:04:20] 2025-12-03 01:03:14,536 | INFO     | current chi2=5.348775730480387 (change=23.675011335551975 %)
[2025-12-03 02:04:20] 2025-12-03 01:03:14,536 | INFO     | right removable region: 222
[2025-12-03 02:04:20] 2025-12-03 01:03:14,536 | INFO     | sum of square deviations: 3438620752.0
[2025-12-03 02:04:20] 2025-12-03 01:03:14,537 | INFO     | sum of deviations: 212675443052.99997
[2025-12-03 02:04:20] 2025-12-03 01:03:14,537 | INFO     | mean x: 1764717006.0
[2025-12-03 02:04:20] 2025-12-03 01:03:14,537 | INFO     | mean y: 3527966.4932735427
[2025-12-03 02:04:20] 2025-12-03 01:03:14,537 | INFO     | intersect: -109142550703.54367
[2025-12-03 02:04:20] 2025-12-03 01:03:14,537 | INFO     | chi2: 2.7019035439988683
[2025-12-03 02:04:20] 2025-12-03 01:03:14,537 | INFO     | current chi2=2.7019035439988683 (change=61.44486743144414 %)
[2025-12-03 02:04:20] 2025-12-03 01:03:14,538 | INFO     | sum of square deviations: 3212467674.5
[2025-12-03 02:04:20] 2025-12-03 01:03:14,538 | INFO     | sum of deviations: 171408170213.50003
[2025-12-03 02:04:20] 2025-12-03 01:03:14,538 | INFO     | mean x: 1764717158.5
[2025-12-03 02:04:20] 2025-12-03 01:03:14,538 | INFO     | mean y: 3555585.8853211007
[2025-12-03 02:04:20] 2025-12-03 01:03:14,538 | INFO     | intersect: -94156750363.31999
[2025-12-03 02:04:20] 2025-12-03 01:03:14,539 | INFO     | chi2: 2.0787346219229654
[2025-12-03 02:04:20] 2025-12-03 01:03:14,539 | INFO     | current chi2=2.0787346219229654 (change=23.064069902125414 %)
[2025-12-03 02:04:20] 2025-12-03 01:03:14,539 | INFO     | left removable region: 20
[2025-12-03 02:04:20] 2025-12-03 01:03:14,539 | INFO     | sum of square deviations: 2555770710.5
[2025-12-03 02:04:20] 2025-12-03 01:03:14,539 | INFO     | sum of deviations: 189246321127.0
[2025-12-03 02:04:20] 2025-12-03 01:03:14,539 | INFO     | mean x: 1764717280.5
[2025-12-03 02:04:20] 2025-12-03 01:03:14,539 | INFO     | mean y: 3609039.4752475247
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | intersect: -130667836482.54242
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | chi2: 0.2671164481417588
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | current memory leak: 74.05 B/s (using 202 data points, chi2=0.27)
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | could have reported an average CPU frequency of 2947 MHz (11 samples)
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | ..............................
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | . Timing measurements:
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | . get job = 0 s
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | . initial setup = 1 s
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | . payload setup = 3 s
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | . stage-in = 0 s
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | . payload execution = 13854 s
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | . stage-out = 1 s
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | . log creation = 0 s
[2025-12-03 02:04:20] 2025-12-03 01:03:14,540 | INFO     | ..............................
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | 
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | job summary report
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | --------------------------------------------------
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | PanDA job id: 6905166392
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | task id: 47538113
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | errors: (none)
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | pilot state: finished 
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | transexitcode: 0
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | exeerrorcode: 0
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | exeerrordiag: 
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | exitcode: 0
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | exitmsg: OK
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | cpuconsumptiontime: 102594 s
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | nevents: 1000
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | neventsw: 0
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | pid: 26375
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | pgrp: 26375
[2025-12-03 02:04:20] 2025-12-03 01:03:14,590 | INFO     | corecount: 8
[2025-12-03 02:04:20] 2025-12-03 01:03:14,591 | INFO     | event service: False
[2025-12-03 02:04:20] 2025-12-03 01:03:14,591 | INFO     | sizes: {0: 2284520, 2: 2284782, 11: 2284810, 13861: 2334252, 13863: 2343276, 13865: 2343332, 13870: 2343706}
[2025-12-03 02:04:20] 2025-12-03 01:03:14,591 | INFO     | --------------------------------------------------
[2025-12-03 02:04:20] 2025-12-03 01:03:14,591 | INFO     | 
[2025-12-03 02:04:20] 2025-12-03 01:03:14,591 | INFO     | executing command: ls -lF /tmp/job_10945529/atlas/pilot/slots/0
[2025-12-03 02:04:20] 2025-12-03 01:03:14,599 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,599 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,599 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,599 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,599 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,599 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | job 6905166392 has completed (purged errors)
[2025-12-03 02:04:20] 2025-12-03 01:03:14,600 | INFO     | overall cleanup function is called
[2025-12-03 02:04:20] 2025-12-03 01:03:15,608 | INFO     | --- collectZombieJob: --- 10, [26375]
[2025-12-03 02:04:20] 2025-12-03 01:03:15,608 | INFO     | zombie collector waiting for pid 26375
[2025-12-03 02:04:20] 2025-12-03 01:03:15,608 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 02:04:20] 2025-12-03 01:03:15,608 | INFO     | collected zombie processes
[2025-12-03 02:04:20] 2025-12-03 01:03:15,608 | INFO     | will attempt to kill all subprocesses of pid=26375
[2025-12-03 02:04:20] 2025-12-03 01:03:15,715 | INFO     | process IDs to be killed: [26375] (in reverse order)
[2025-12-03 02:04:20] 2025-12-03 01:03:15,755 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 02:04:20] 2025-12-03 01:03:15,755 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 02:04:20] 2025-12-03 01:03:15,759 | INFO     | did not find any defunct processes belonging to 26375
[2025-12-03 02:04:20] 2025-12-03 01:03:15,762 | INFO     | did not find any defunct processes belonging to 26375
[2025-12-03 02:04:20] 2025-12-03 01:03:15,763 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 02:04:20] 2025-12-03 01:03:15,763 | INFO     | ready for new job
[2025-12-03 02:04:20] 2025-12-03 01:03:15,763 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 02:04:20] 2025-12-03 01:03:15,764 | INFO     | ***************************************
[2025-12-03 02:04:20] 2025-12-03 01:03:15,764 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 02:04:20] 2025-12-03 01:03:15,764 | INFO     | ***************************************
[2025-12-03 02:04:20] 2025-12-03 01:03:15,764 | INFO     | 
[2025-12-03 02:04:20] 2025-12-03 01:03:15,778 | INFO     | architecture information:
[2025-12-03 02:04:20] 2025-12-03 01:03:15,778 | INFO     | executing command: cat /etc/os-release
[2025-12-03 02:04:20] 2025-12-03 01:03:15,783 | INFO     | cat /etc/os-release:
[2025-12-03 02:04:20] NAME="CentOS Linux"
[2025-12-03 02:04:20] VERSION="7 (Core)"
[2025-12-03 02:04:20] ID="centos"
[2025-12-03 02:04:20] ID_LIKE="rhel fedora"
[2025-12-03 02:04:20] VERSION_ID="7"
[2025-12-03 02:04:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 02:04:20] ANSI_COLOR="0;31"
[2025-12-03 02:04:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 02:04:20] HOME_URL="https://www.centos.org/"
[2025-12-03 02:04:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 02:04:20] 
[2025-12-03 02:04:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 02:04:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 02:04:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 02:04:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 02:04:20] 
[2025-12-03 02:04:20] 2025-12-03 01:03:15,783 | INFO     | ***************************************
[2025-12-03 02:04:20] 2025-12-03 01:03:16,286 | INFO     | executing command: df -mP /tmp/job_10945529/atlas/pilot/slots/0
[2025-12-03 02:04:20] 2025-12-03 01:03:16,292 | INFO     | sufficient remaining disk space (219701837824 B)
[2025-12-03 02:04:20] 2025-12-03 01:03:16,292 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 02:04:20] 2025-12-03 01:03:16,292 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 02:04:20] 2025-12-03 01:03:16,292 | INFO     | update_server=False
[2025-12-03 02:04:20] 2025-12-03 01:03:16,292 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 02:04:20] 2025-12-03 01:03:16,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:04:20] 2025-12-03 01:03:16,293 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 02:04:20] 2025-12-03 01:03:16,293 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 02:04:20] 2025-12-03 01:03:16,318 | INFO     | all job control threads have been joined
[2025-12-03 02:04:20] 2025-12-03 01:03:16,464 | INFO     | all payload control threads have been joined
[2025-12-03 02:04:20] 2025-12-03 01:03:16,710 | INFO     | all data control threads have been joined
[2025-12-03 02:04:20] 2025-12-03 01:03:16,873 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:04:20] 2025-12-03 01:03:16,873 | INFO     | aborting loop
[2025-12-03 02:04:20] 2025-12-03 01:03:17,298 | INFO     | [job] retrieve thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:17,298 | INFO     | [job] queue monitor thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:17,323 | INFO     | [job] control thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:17,375 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:17,412 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:17,469 | INFO     | [payload] control thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:17,712 | INFO     | [data] control thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:17,789 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:17,878 | INFO     | [job] job monitor thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:18,172 | INFO     | [data] copytool_in thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:18,201 | INFO     | [payload] failed_post thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:18,298 | INFO     | [data] copytool_out thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:18,576 | INFO     | [payload] validate_post thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:18,691 | INFO     | [job] validate thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:20,298 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:26,929 | INFO     | job.realtimelogging is not enabled
[2025-12-03 02:04:20] 2025-12-03 01:03:27,934 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 02:04:20] 2025-12-03 01:03:45,855 | INFO     | 13884s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-03 02:04:20] 2025-12-03 01:03:46,992 | INFO     | PID=31591 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 02:04:20] 2025-12-03 01:03:46,992 | INFO     | .. there are 4 such processes running
[2025-12-03 02:04:20] 2025-12-03 01:03:46,992 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 02:04:20] 2025-12-03 01:03:46,992 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 02:04:20] 2025-12-03 01:03:46,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 02:04:20] 2025-12-03 01:04:14,602 | INFO     | [monitor] cgroup control has ended
[2025-12-03 02:04:20] 2025-12-03 01:04:14,802 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-03 02:04:20] 2025-12-03 01:04:15,132 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 02:04:20] 2025-12-03 01:04:15,132 | INFO     | [monitor] control thread has ended
[2025-12-03 02:04:20] 2025-12-03 01:04:19,827 | INFO     | all workflow threads have been joined
[2025-12-03 02:04:20] 2025-12-03 01:04:19,827 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 02:04:20] 2025-12-03 01:04:19,827 | INFO     | traces error code: 0
[2025-12-03 02:04:20] 2025-12-03 01:04:19,827 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 02:04:20] 2025-12-03 01:04:19,879 [wrapper] ==== pilot stdout END ====
[2025-12-03 02:04:20] 2025-12-03 01:04:19,881 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 02:04:20] 2025-12-03 01:04:19,882 [wrapper] pilotpid: 31591
[2025-12-03 02:04:20] 2025-12-03 01:04:19,883 [wrapper] Pilot exit status: 0
[2025-12-03 02:04:20] 2025-12-03 01:04:19,887 [wrapper] pandaids: 6905166392
[2025-12-03 02:04:20] 2025-12-03 01:04:19,912 [wrapper] cleanup supervisor_pilot 12283 31592
[2025-12-03 02:04:20] 2025-12-03 01:04:19,913 [wrapper] Test setup, not cleaning
[2025-12-03 02:04:20] 2025-12-03 01:04:19,914 [wrapper] apfmon messages muted
[2025-12-03 02:04:20] 2025-12-03 01:04:19,916 [wrapper] ==== wrapper stdout END ====
[2025-12-03 02:04:20] 2025-12-03 01:04:19,917 [wrapper] ==== wrapper stderr END ====
[2025-12-03 02:04:20]  *** Error codes and diagnostics ***
[2025-12-03 02:04:20]     "exeErrorCode": 0,
[2025-12-03 02:04:20]     "exeErrorDiag": "",
[2025-12-03 02:04:20]     "pilotErrorCode": 0,
[2025-12-03 02:04:20]     "pilotErrorDiag": "",
[2025-12-03 02:04:20]  *** Listing of results directory ***
[2025-12-03 02:04:20] total 1069628
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-03 02:04:20] -rwx------ 1 mf493845 unix-user     36292 Nov 30 01:18 runpilot2-wrapper.sh
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user      5112 Nov 30 01:23 queuedata.json
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user       100 Dec  2 20:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 02:04:20] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 20:35 run_atlas
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user       105 Dec  2 20:35 job.xml
[2025-12-03 02:04:20] -rw-r--r-- 2 mf493845 unix-user 375247901 Dec  2 22:11 EVNT.47528871._000063.pool.root.1
[2025-12-03 02:04:20] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 22:11 start_atlas.sh
[2025-12-03 02:04:20] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 22:11 shared
[2025-12-03 02:04:20] -rw-r--r-- 2 mf493845 unix-user    590138 Dec  2 22:11 input.tar.gz
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user      6392 Dec  2 22:11 init_data.xml
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user         0 Dec  2 22:11 boinc_setup_complete
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user      8192 Dec  2 22:11 boinc_mmap_file
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user         0 Dec  2 22:11 boinc_lockfile
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user      2876 Dec  2 22:11 pandaJob.out
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user    989224 Dec  2 22:11 agis_schedconf.cvmfs.json
[2025-12-03 02:04:20] drwx------ 5 mf493845 unix-user       440 Dec  2 22:11 pilot3
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user 708830098 Dec  3 02:02 HITS.47538113._002342.pool.root.1
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user      1033 Dec  3 02:03 memory_monitor_summary.json
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user   1516240 Dec  3 02:03 agis_ddmendpoints.agis.ALL.json
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user   1629875 Dec  3 02:03 log.47538113._002342.job.log.tgz.1
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user     26974 Dec  3 02:03 heartbeat.json
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user        95 Dec  3 02:03 pilot_heartbeat.json
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user      5023 Dec  3 02:04 pilotlog.txt
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user   2019873 Dec  3 02:04 log.47538113._002342.job.log.1
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user       353 Dec  3 02:04 output.list
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user       620 Dec  3 02:04 runtime_log
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user   3686400 Dec  3 02:04 result.tar.gz
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user       650 Dec  3 02:04 w5VKDmXKkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoOPKDmWLc7bm.diag
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user      9221 Dec  3 02:04 runtime_log.err
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user     21922 Dec  3 02:04 stderr.txt
[2025-12-03 02:04:20] HITS file was successfully produced:
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user 708830098 Dec  3 02:02 shared/HITS.pool.root.1
[2025-12-03 02:04:20]  *** Contents of shared directory: ***
[2025-12-03 02:04:20] total 1062872
[2025-12-03 02:04:20] -rw-r--r-- 2 mf493845 unix-user 375247901 Dec  2 22:11 ATLAS.root_0
[2025-12-03 02:04:20] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 22:11 start_atlas.sh
[2025-12-03 02:04:20] -rw-r--r-- 2 mf493845 unix-user    590138 Dec  2 22:11 input.tar.gz
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user 708830098 Dec  3 02:02 HITS.pool.root.1
[2025-12-03 02:04:20] -rw------- 1 mf493845 unix-user   3686400 Dec  3 02:04 result.tar.gz
02:04:21 (24038): run_atlas exited; CPU time 102736.197838
02:04:21 (24038): called boinc_finish(0)

</stderr_txt>
]]>

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