Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
22:24:36 (12866): wrapper (7.7.26015): starting
22:24:36 (12866): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 22:24:36] Arguments: --nthreads 8
[2025-12-02 22:24:36] Threads: 8
[2025-12-02 22:24:36] Checking for CVMFS
[2025-12-02 22:24:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 22:24:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 22:24:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 22:24:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 22:24:36] 2.11.0.0 13282 74728 112108 153569 1 59 3752844 4096001 5497 130560 0 9862945 99.529 9408326 774 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 22:24:36] CVMFS is ok
[2025-12-02 22:24:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 22:24:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 22:24:36] Further information can be found at the LHC@home message board.
[2025-12-02 22:24:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 22:24:36] Checking for apptainer binary...
[2025-12-02 22:24:36] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 22:24:36] apptainer is not installed, using version from CVMFS
[2025-12-02 22:24:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 22:24:36] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945472/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node022
[2025-12-02 22:24:36] apptainer works
[2025-12-02 22:24:37] Set ATHENA_PROC_NUMBER=8
[2025-12-02 22:24:37] Set ATHENA_CORE_NUMBER=8
[2025-12-02 22:24:37] Starting ATLAS job with PandaID=6895334249
[2025-12-02 22:24:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945472/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 03:38:43]  *** The last 200 lines of the pilot log: ***
[2025-12-03 03:38:43] 2025-12-03 02:38:11,136 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 03:38:43] 2025-12-03 02:38:11,144 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2412.9086875
[2025-12-03 03:38:43] 2025-12-03 02:38:11,154 | INFO     | using path: /tmp/job_10945472/atlas/pilot/slots/0/PanDA_Pilot-6895334249/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 03:38:43] 2025-12-03 02:38:11,155 | INFO     | extracted standard info from prmon json
[2025-12-03 03:38:43] 2025-12-03 02:38:11,155 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 03:38:43] 2025-12-03 02:38:11,155 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 03:38:43] 2025-12-03 02:38:11,157 | INFO     | fitting pss+swap vs Time
[2025-12-03 03:38:43] 2025-12-03 02:38:11,158 | INFO     | sum of square deviations: 9059954057.0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,159 | INFO     | sum of deviations: 199536789113.50003
[2025-12-03 03:38:43] 2025-12-03 02:38:11,159 | INFO     | mean x: 1764720065.5
[2025-12-03 03:38:43] 2025-12-03 02:38:11,159 | INFO     | mean y: 2950056.366883117
[2025-12-03 03:38:43] 2025-12-03 02:38:11,159 | INFO     | intersect: -38863314975.29424
[2025-12-03 03:38:43] 2025-12-03 02:38:11,159 | INFO     | chi2: 3.1009396484197236
[2025-12-03 03:38:43] 2025-12-03 02:38:11,160 | INFO     | sum of square deviations: 8625843592.0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,161 | INFO     | sum of deviations: 250531438603.99997
[2025-12-03 03:38:43] 2025-12-03 02:38:11,161 | INFO     | mean x: 1764719913.0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,161 | INFO     | mean y: 2967808.739273927
[2025-12-03 03:38:43] 2025-12-03 02:38:11,161 | INFO     | intersect: -51252055983.60677
[2025-12-03 03:38:43] 2025-12-03 02:38:11,161 | INFO     | chi2: 1.5941353780390781
[2025-12-03 03:38:43] 2025-12-03 02:38:11,161 | INFO     | current chi2=1.5941353780390781 (change=48.59186057195699 %)
[2025-12-03 03:38:43] 2025-12-03 02:38:11,161 | INFO     | sum of square deviations: 8205826414.5
[2025-12-03 03:38:43] 2025-12-03 02:38:11,162 | INFO     | sum of deviations: 220805179775.50006
[2025-12-03 03:38:43] 2025-12-03 02:38:11,163 | INFO     | mean x: 1764719760.5
[2025-12-03 03:38:43] 2025-12-03 02:38:11,163 | INFO     | mean y: 2957019.432885906
[2025-12-03 03:38:43] 2025-12-03 02:38:11,163 | INFO     | intersect: -47482725017.666695
[2025-12-03 03:38:43] 2025-12-03 02:38:11,163 | INFO     | chi2: 1.510471619752025
[2025-12-03 03:38:43] 2025-12-03 02:38:11,163 | INFO     | current chi2=1.510471619752025 (change=5.2482216654627365 %)
[2025-12-03 03:38:43] 2025-12-03 02:38:11,163 | INFO     | right removable region: 297
[2025-12-03 03:38:43] 2025-12-03 02:38:11,163 | INFO     | sum of square deviations: 8625843592.0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,164 | INFO     | sum of deviations: 141131312270.0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,164 | INFO     | mean x: 1764720218.0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,164 | INFO     | mean y: 2970438.726072607
[2025-12-03 03:38:43] 2025-12-03 02:38:11,164 | INFO     | intersect: -28870411915.056404
[2025-12-03 03:38:43] 2025-12-03 02:38:11,165 | INFO     | chi2: 1.7381131038002042
[2025-12-03 03:38:43] 2025-12-03 02:38:11,165 | INFO     | current chi2=1.7381131038002042 (change=43.94882516704355 %)
[2025-12-03 03:38:43] 2025-12-03 02:38:11,165 | INFO     | sum of square deviations: 8205826414.5
[2025-12-03 03:38:43] 2025-12-03 02:38:11,166 | INFO     | sum of deviations: 127064670942.49997
[2025-12-03 03:38:43] 2025-12-03 02:38:11,166 | INFO     | mean x: 1764720370.5
[2025-12-03 03:38:43] 2025-12-03 02:38:11,166 | INFO     | mean y: 2975541.1308724834
[2025-12-03 03:38:43] 2025-12-03 02:38:11,166 | INFO     | intersect: -27323170767.16539
[2025-12-03 03:38:43] 2025-12-03 02:38:11,166 | INFO     | chi2: 1.7271988846391078
[2025-12-03 03:38:43] 2025-12-03 02:38:11,166 | INFO     | current chi2=1.7271988846391078 (change=0.6279349219123694 %)
[2025-12-03 03:38:43] 2025-12-03 02:38:11,167 | INFO     | left removable region: 20
[2025-12-03 03:38:43] 2025-12-03 02:38:11,167 | INFO     | sum of square deviations: 6590404498.0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,168 | INFO     | sum of deviations: 125601214544.0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,168 | INFO     | mean x: 1764720340.0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,168 | INFO     | mean y: 2989684.3465703973
[2025-12-03 03:38:43] 2025-12-03 02:38:11,168 | INFO     | intersect: -33629394807.647114
[2025-12-03 03:38:43] 2025-12-03 02:38:11,168 | INFO     | chi2: 0.08797403033596755
[2025-12-03 03:38:43] 2025-12-03 02:38:11,168 | INFO     | current memory leak: 19.06 B/s (using 277 data points, chi2=0.09)
[2025-12-03 03:38:43] 2025-12-03 02:38:11,168 | INFO     | could have reported an average CPU frequency of 2531 MHz (14 samples)
[2025-12-03 03:38:43] 2025-12-03 02:38:11,168 | INFO     | ..............................
[2025-12-03 03:38:43] 2025-12-03 02:38:11,168 | INFO     | . Timing measurements:
[2025-12-03 03:38:43] 2025-12-03 02:38:11,168 | INFO     | . get job = 0 s
[2025-12-03 03:38:43] 2025-12-03 02:38:11,169 | INFO     | . initial setup = 1 s
[2025-12-03 03:38:43] 2025-12-03 02:38:11,169 | INFO     | . payload setup = 3 s
[2025-12-03 03:38:43] 2025-12-03 02:38:11,169 | INFO     | . stage-in = 0 s
[2025-12-03 03:38:43] 2025-12-03 02:38:11,169 | INFO     | . payload execution = 18782 s
[2025-12-03 03:38:43] 2025-12-03 02:38:11,169 | INFO     | . stage-out = 1 s
[2025-12-03 03:38:43] 2025-12-03 02:38:11,169 | INFO     | . log creation = 0 s
[2025-12-03 03:38:43] 2025-12-03 02:38:11,169 | INFO     | ..............................
[2025-12-03 03:38:43] 2025-12-03 02:38:11,254 | INFO     | 
[2025-12-03 03:38:43] 2025-12-03 02:38:11,254 | INFO     | job summary report
[2025-12-03 03:38:43] 2025-12-03 02:38:11,254 | INFO     | --------------------------------------------------
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | PanDA job id: 6895334249
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | task id: 47556137
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | errors: (none)
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | pilot state: finished 
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | transexitcode: 0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | exeerrorcode: 0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | exeerrordiag: 
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | exitcode: 0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | exitmsg: OK
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | cpuconsumptiontime: 145105 s
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | nevents: 1000
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | neventsw: 0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | pid: 23535
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | pgrp: 23535
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | corecount: 8
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | event service: False
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | sizes: {0: 2284390, 2: 2284652, 11: 2284680, 18789: 2318045, 18790: 2327069, 18793: 2327125, 18795: 2327499}
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | --------------------------------------------------
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | 
[2025-12-03 03:38:43] 2025-12-03 02:38:11,255 | INFO     | executing command: ls -lF /tmp/job_10945472/atlas/pilot/slots/0
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,265 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,266 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,266 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 03:38:43] 2025-12-03 02:38:11,266 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,266 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 03:38:43] 2025-12-03 02:38:11,266 | INFO     | job 6895334249 has completed (purged errors)
[2025-12-03 03:38:43] 2025-12-03 02:38:11,266 | INFO     | overall cleanup function is called
[2025-12-03 03:38:43] 2025-12-03 02:38:12,273 | INFO     | --- collectZombieJob: --- 10, [23535]
[2025-12-03 03:38:43] 2025-12-03 02:38:12,273 | INFO     | zombie collector waiting for pid 23535
[2025-12-03 03:38:43] 2025-12-03 02:38:12,273 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 03:38:43] 2025-12-03 02:38:12,273 | INFO     | collected zombie processes
[2025-12-03 03:38:43] 2025-12-03 02:38:12,273 | INFO     | will attempt to kill all subprocesses of pid=23535
[2025-12-03 03:38:43] 2025-12-03 02:38:12,429 | INFO     | process IDs to be killed: [23535] (in reverse order)
[2025-12-03 03:38:43] 2025-12-03 02:38:12,475 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 03:38:43] 2025-12-03 02:38:12,475 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 03:38:43] 2025-12-03 02:38:12,481 | INFO     | did not find any defunct processes belonging to 23535
[2025-12-03 03:38:43] 2025-12-03 02:38:12,485 | INFO     | did not find any defunct processes belonging to 23535
[2025-12-03 03:38:43] 2025-12-03 02:38:12,486 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 03:38:43] 2025-12-03 02:38:12,486 | INFO     | ready for new job
[2025-12-03 03:38:43] 2025-12-03 02:38:12,486 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 03:38:43] 2025-12-03 02:38:12,487 | INFO     | ***************************************
[2025-12-03 03:38:43] 2025-12-03 02:38:12,487 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 03:38:43] 2025-12-03 02:38:12,487 | INFO     | ***************************************
[2025-12-03 03:38:43] 2025-12-03 02:38:12,487 | INFO     | 
[2025-12-03 03:38:43] 2025-12-03 02:38:12,503 | INFO     | architecture information:
[2025-12-03 03:38:43] 2025-12-03 02:38:12,503 | INFO     | executing command: cat /etc/os-release
[2025-12-03 03:38:43] 2025-12-03 02:38:12,510 | INFO     | cat /etc/os-release:
[2025-12-03 03:38:43] NAME="CentOS Linux"
[2025-12-03 03:38:43] VERSION="7 (Core)"
[2025-12-03 03:38:43] ID="centos"
[2025-12-03 03:38:43] ID_LIKE="rhel fedora"
[2025-12-03 03:38:43] VERSION_ID="7"
[2025-12-03 03:38:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 03:38:43] ANSI_COLOR="0;31"
[2025-12-03 03:38:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 03:38:43] HOME_URL="https://www.centos.org/"
[2025-12-03 03:38:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 03:38:43] 
[2025-12-03 03:38:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 03:38:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 03:38:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 03:38:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 03:38:43] 
[2025-12-03 03:38:43] 2025-12-03 02:38:12,510 | INFO     | ***************************************
[2025-12-03 03:38:43] 2025-12-03 02:38:13,013 | INFO     | executing command: df -mP /tmp/job_10945472/atlas/pilot/slots/0
[2025-12-03 03:38:43] 2025-12-03 02:38:13,020 | INFO     | sufficient remaining disk space (225000292352 B)
[2025-12-03 03:38:43] 2025-12-03 02:38:13,020 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 03:38:43] 2025-12-03 02:38:13,020 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 03:38:43] 2025-12-03 02:38:13,020 | INFO     | update_server=False
[2025-12-03 03:38:43] 2025-12-03 02:38:13,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 03:38:43] 2025-12-03 02:38:13,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 03:38:43] 2025-12-03 02:38:13,020 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 03:38:43] 2025-12-03 02:38:13,072 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 03:38:43] 2025-12-03 02:38:13,072 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 03:38:43] 2025-12-03 02:38:13,072 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 03:38:43] 2025-12-03 02:38:13,072 | INFO     | will abort loop
[2025-12-03 03:38:43] 2025-12-03 02:38:13,829 | INFO     | all payload control threads have been joined
[2025-12-03 03:38:43] 2025-12-03 02:38:13,898 | INFO     | all job control threads have been joined
[2025-12-03 03:38:43] 2025-12-03 02:38:14,025 | INFO     | [job] retrieve thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:14,025 | INFO     | [job] queue monitor thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:14,077 | INFO     | [job] job monitor thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:14,105 | INFO     | all data control threads have been joined
[2025-12-03 03:38:43] 2025-12-03 02:38:14,147 | INFO     | [monitor] cgroup control has ended
[2025-12-03 03:38:43] 2025-12-03 02:38:14,154 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:14,252 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:14,313 | INFO     | [job] validate thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:14,381 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:14,452 | INFO     | [payload] failed_post thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:14,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:14,706 | INFO     | [payload] validate_post thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:14,834 | INFO     | [payload] control thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:14,904 | INFO     | [job] control thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:15,025 | INFO     | [data] copytool_out thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:15,110 | INFO     | [data] control thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:15,209 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 03:38:43] 2025-12-03 02:38:15,494 | INFO     | [data] copytool_in thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:19,214 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 03:38:43] 2025-12-03 02:38:19,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-03 03:38:43] 2025-12-03 02:38:25,015 | INFO     | all workflow threads have been joined
[2025-12-03 03:38:43] 2025-12-03 02:38:25,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 03:38:43] 2025-12-03 02:38:25,016 | INFO     | traces error code: 0
[2025-12-03 03:38:43] 2025-12-03 02:38:25,016 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 03:38:43] 2025-12-03 02:38:43,352 | INFO     | PID=16835 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 03:38:43] 2025-12-03 02:38:43,352 | INFO     | .. there are 2 such processes running
[2025-12-03 03:38:43] 2025-12-03 02:38:43,352 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 03:38:43] 2025-12-03 02:38:43,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 03:38:43] 2025-12-03 02:38:43,353 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 03:38:43] 2025-12-03 02:38:43,353 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 03:38:43] 2025-12-03 02:38:43,353 | CRITICAL | thread 'MainThread' is not alive
[2025-12-03 03:38:43] 2025-12-03 02:38:43,353 | INFO     | [monitor] control thread has ended
[2025-12-03 03:38:43] 2025-12-03 02:38:43,415 [wrapper] ==== pilot stdout END ====
[2025-12-03 03:38:43] 2025-12-03 02:38:43,416 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 03:38:43] 2025-12-03 02:38:43,417 [wrapper] pilotpid: 16835
[2025-12-03 03:38:43] 2025-12-03 02:38:43,418 [wrapper] Pilot exit status: 0
[2025-12-03 03:38:43] 2025-12-03 02:38:43,423 [wrapper] pandaids: 6895334249
[2025-12-03 03:38:43] 2025-12-03 02:38:43,454 [wrapper] cleanup supervisor_pilot 30502 16836
[2025-12-03 03:38:43] 2025-12-03 02:38:43,456 [wrapper] Test setup, not cleaning
[2025-12-03 03:38:43] 2025-12-03 02:38:43,457 [wrapper] apfmon messages muted
[2025-12-03 03:38:43] 2025-12-03 02:38:43,458 [wrapper] ==== wrapper stdout END ====
[2025-12-03 03:38:43] 2025-12-03 02:38:43,459 [wrapper] ==== wrapper stderr END ====
[2025-12-03 03:38:43]  *** Error codes and diagnostics ***
[2025-12-03 03:38:43]     "exeErrorCode": 0,
[2025-12-03 03:38:43]     "exeErrorDiag": "",
[2025-12-03 03:38:43]     "pilotErrorCode": 0,
[2025-12-03 03:38:43]     "pilotErrorDiag": "",
[2025-12-03 03:38:43]  *** Listing of results directory ***
[2025-12-03 03:38:43] total 1309888
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user    576529 Nov 22 03:56 pilot3.tar.gz
[2025-12-03 03:38:43] -rwx------ 1 mf493845 unix-user     36292 Nov 22 04:40 runpilot2-wrapper.sh
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user      5112 Nov 22 04:40 queuedata.json
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user       100 Dec  2 20:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 03:38:43] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 20:40 run_atlas
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user       105 Dec  2 20:40 job.xml
[2025-12-03 03:38:43] -rw-r--r-- 2 mf493845 unix-user 409824032 Dec  2 22:24 EVNT.47483658._000234.pool.root.1
[2025-12-03 03:38:43] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 22:24 start_atlas.sh
[2025-12-03 03:38:43] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 22:24 shared
[2025-12-03 03:38:43] -rw-r--r-- 2 mf493845 unix-user    590096 Dec  2 22:24 input.tar.gz
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user      6390 Dec  2 22:24 init_data.xml
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user         0 Dec  2 22:24 boinc_setup_complete
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user      8192 Dec  2 22:24 boinc_mmap_file
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user         0 Dec  2 22:24 boinc_lockfile
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user      2785 Dec  2 22:24 pandaJob.out
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user    989224 Dec  2 22:24 agis_schedconf.cvmfs.json
[2025-12-03 03:38:43] drwx------ 5 mf493845 unix-user       440 Dec  2 22:24 pilot3
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user 919143135 Dec  3 03:37 HITS.47556137._002306.pool.root.1
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user        95 Dec  3 03:37 pilot_heartbeat.json
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user      1032 Dec  3 03:38 memory_monitor_summary.json
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user   1516240 Dec  3 03:38 agis_ddmendpoints.agis.ALL.json
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user   1596972 Dec  3 03:38 log.47556137._002306.job.log.tgz.1
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user      8578 Dec  3 03:38 heartbeat.json
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user       890 Dec  3 03:38 pilotlog.txt
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user   2640871 Dec  3 03:38 log.47556137._002306.job.log.1
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user       353 Dec  3 03:38 output.list
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user       620 Dec  3 03:38 runtime_log
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user   4259840 Dec  3 03:38 result.tar.gz
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user       651 Dec  3 03:38 zbHNDm0etg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCuJKDmO11vyn.diag
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user      9221 Dec  3 03:38 runtime_log.err
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user     21657 Dec  3 03:38 stderr.txt
[2025-12-03 03:38:43] HITS file was successfully produced:
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user 919143135 Dec  3 03:37 shared/HITS.pool.root.1
[2025-12-03 03:38:43]  *** Contents of shared directory: ***
[2025-12-03 03:38:43] total 1302580
[2025-12-03 03:38:43] -rw-r--r-- 2 mf493845 unix-user 409824032 Dec  2 22:24 ATLAS.root_0
[2025-12-03 03:38:43] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 22:24 start_atlas.sh
[2025-12-03 03:38:43] -rw-r--r-- 2 mf493845 unix-user    590096 Dec  2 22:24 input.tar.gz
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user 919143135 Dec  3 03:37 HITS.pool.root.1
[2025-12-03 03:38:43] -rw------- 1 mf493845 unix-user   4259840 Dec  3 03:38 result.tar.gz
03:38:45 (12866): run_atlas exited; CPU time 145541.057518
03:38:45 (12866): called boinc_finish(0)

</stderr_txt>
]]>

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