Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
22:08:22 (30720): wrapper (7.7.26015): starting
22:08:22 (30720): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 22:08:22] Arguments: --nthreads 8
[2025-12-02 22:08:22] Threads: 8
[2025-12-02 22:08:22] Checking for CVMFS
[2025-12-02 22:08:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 22:08:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 22:08:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 22:08:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 22:08:22] 2.11.0.0 7824 74818 118668 153568 1 2 3477167 4096001 0 130560 2 12159760 99.679 8279112 776 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 22:08:22] CVMFS is ok
[2025-12-02 22:08:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 22:08:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 22:08:22] Further information can be found at the LHC@home message board.
[2025-12-02 22:08:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 22:08:22] Checking for apptainer binary...
[2025-12-02 22:08:22] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 22:08:22] apptainer is not installed, using version from CVMFS
[2025-12-02 22:08:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 22:08:23] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945500/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node118
[2025-12-02 22:08:23] apptainer works
[2025-12-02 22:08:23] Set ATHENA_PROC_NUMBER=8
[2025-12-02 22:08:23] Set ATHENA_CORE_NUMBER=8
[2025-12-02 22:08:23] Starting ATLAS job with PandaID=6905380004
[2025-12-02 22:08:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945500/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 01:48:55]  *** The last 200 lines of the pilot log: ***
[2025-12-03 01:48:55] 2025-12-03 00:47:48,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 01:48:55] 2025-12-03 00:47:48,464 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 01:48:55] 2025-12-03 00:47:48,468 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 3082.438906249999
[2025-12-03 01:48:55] 2025-12-03 00:47:48,474 | INFO     | using path: /tmp/job_10945500/atlas/pilot/slots/0/PanDA_Pilot-6905380004/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 01:48:55] 2025-12-03 00:47:48,474 | INFO     | extracted standard info from prmon json
[2025-12-03 01:48:55] 2025-12-03 00:47:48,474 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 01:48:55] 2025-12-03 00:47:48,474 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 01:48:55] 2025-12-03 00:47:48,476 | INFO     | fitting pss+swap vs Time
[2025-12-03 01:48:55] 2025-12-03 00:47:48,476 | INFO     | sum of square deviations: 3124858590.0
[2025-12-03 01:48:55] 2025-12-03 00:47:48,477 | INFO     | sum of deviations: 1051360792477.5001
[2025-12-03 01:48:55] 2025-12-03 00:47:48,477 | INFO     | mean x: 1764716284.5
[2025-12-03 01:48:55] 2025-12-03 00:47:48,477 | INFO     | mean y: 4565267.013888889
[2025-12-03 01:48:55] 2025-12-03 00:47:48,477 | INFO     | intersect: -593735425818.429
[2025-12-03 01:48:55] 2025-12-03 00:47:48,477 | INFO     | chi2: 5.615375285544277
[2025-12-03 01:48:55] 2025-12-03 00:47:48,478 | INFO     | sum of square deviations: 2912836010.0
[2025-12-03 01:48:55] 2025-12-03 00:47:48,478 | INFO     | sum of deviations: 1095022408158.9999
[2025-12-03 01:48:55] 2025-12-03 00:47:48,478 | INFO     | mean x: 1764716132.0
[2025-12-03 01:48:55] 2025-12-03 00:47:48,478 | INFO     | mean y: 4595904.919431279
[2025-12-03 01:48:55] 2025-12-03 00:47:48,478 | INFO     | intersect: -663405119556.431
[2025-12-03 01:48:55] 2025-12-03 00:47:48,479 | INFO     | chi2: 4.176984570945769
[2025-12-03 01:48:55] 2025-12-03 00:47:48,479 | INFO     | current chi2=4.176984570945769 (change=25.615219668423116 %)
[2025-12-03 01:48:55] 2025-12-03 00:47:48,479 | INFO     | sum of square deviations: 2710627567.5
[2025-12-03 01:48:55] 2025-12-03 00:47:48,479 | INFO     | sum of deviations: 1001697009937.9999
[2025-12-03 01:48:55] 2025-12-03 00:47:48,479 | INFO     | mean x: 1764715979.5
[2025-12-03 01:48:55] 2025-12-03 00:47:48,479 | INFO     | mean y: 4525533.912621359
[2025-12-03 01:48:55] 2025-12-03 00:47:48,480 | INFO     | intersect: -652136233768.2997
[2025-12-03 01:48:55] 2025-12-03 00:47:48,480 | INFO     | chi2: 3.9920929322426124
[2025-12-03 01:48:55] 2025-12-03 00:47:48,480 | INFO     | current chi2=3.9920929322426124 (change=4.426438153236765 %)
[2025-12-03 01:48:55] 2025-12-03 00:47:48,480 | INFO     | right removable region: 205
[2025-12-03 01:48:55] 2025-12-03 00:47:48,480 | INFO     | sum of square deviations: 2912836010.0
[2025-12-03 01:48:55] 2025-12-03 00:47:48,481 | INFO     | sum of deviations: 964784435750.9999
[2025-12-03 01:48:55] 2025-12-03 00:47:48,481 | INFO     | mean x: 1764716437.0
[2025-12-03 01:48:55] 2025-12-03 00:47:48,481 | INFO     | mean y: 4627209.497630332
[2025-12-03 01:48:55] 2025-12-03 00:47:48,481 | INFO     | intersect: -584501656730.4485
[2025-12-03 01:48:55] 2025-12-03 00:47:48,481 | INFO     | chi2: 4.106826531840187
[2025-12-03 01:48:55] 2025-12-03 00:47:48,481 | INFO     | current chi2=4.106826531840187 (change=26.86461148175731 %)
[2025-12-03 01:48:55] 2025-12-03 00:47:48,481 | INFO     | sum of square deviations: 2710627567.5
[2025-12-03 01:48:55] 2025-12-03 00:47:48,482 | INFO     | sum of deviations: 915402681526.4999
[2025-12-03 01:48:55] 2025-12-03 00:47:48,482 | INFO     | mean x: 1764716589.5
[2025-12-03 01:48:55] 2025-12-03 00:47:48,482 | INFO     | mean y: 4664453.354368932
[2025-12-03 01:48:55] 2025-12-03 00:47:48,482 | INFO     | intersect: -595955591220.021
[2025-12-03 01:48:55] 2025-12-03 00:47:48,482 | INFO     | chi2: 3.9568472405649815
[2025-12-03 01:48:55] 2025-12-03 00:47:48,482 | INFO     | current chi2=3.9568472405649815 (change=3.651950967795142 %)
[2025-12-03 01:48:55] 2025-12-03 00:47:48,482 | INFO     | left removable region: 20
[2025-12-03 01:48:55] 2025-12-03 00:47:48,482 | INFO     | sum of square deviations: 1963274020.0
[2025-12-03 01:48:55] 2025-12-03 00:47:48,483 | INFO     | sum of deviations: 773079297404.9999
[2025-12-03 01:48:55] 2025-12-03 00:47:48,483 | INFO     | mean x: 1764716559.0
[2025-12-03 01:48:55] 2025-12-03 00:47:48,483 | INFO     | mean y: 4691054.324324325
[2025-12-03 01:48:55] 2025-12-03 00:47:48,483 | INFO     | intersect: -694888545270.7247
[2025-12-03 01:48:55] 2025-12-03 00:47:48,483 | INFO     | chi2: 1.7794557642322946
[2025-12-03 01:48:55] 2025-12-03 00:47:48,483 | INFO     | current memory leak: 393.77 B/s (using 185 data points, chi2=1.78)
[2025-12-03 01:48:55] 2025-12-03 00:47:48,483 | INFO     | could have reported an average CPU frequency of 2811 MHz (11 samples)
[2025-12-03 01:48:55] 2025-12-03 00:47:48,483 | INFO     | ..............................
[2025-12-03 01:48:55] 2025-12-03 00:47:48,483 | INFO     | . Timing measurements:
[2025-12-03 01:48:55] 2025-12-03 00:47:48,483 | INFO     | . get job = 0 s
[2025-12-03 01:48:55] 2025-12-03 00:47:48,483 | INFO     | . initial setup = 1 s
[2025-12-03 01:48:55] 2025-12-03 00:47:48,484 | INFO     | . payload setup = 3 s
[2025-12-03 01:48:55] 2025-12-03 00:47:48,484 | INFO     | . stage-in = 0 s
[2025-12-03 01:48:55] 2025-12-03 00:47:48,484 | INFO     | . payload execution = 13131 s
[2025-12-03 01:48:55] 2025-12-03 00:47:48,484 | INFO     | . stage-out = 1 s
[2025-12-03 01:48:55] 2025-12-03 00:47:48,484 | INFO     | . log creation = 0 s
[2025-12-03 01:48:55] 2025-12-03 00:47:48,484 | INFO     | ..............................
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | 
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | job summary report
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | --------------------------------------------------
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | PanDA job id: 6905380004
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | task id: 47530725
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | errors: (none)
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | pilot state: finished 
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | transexitcode: 0
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | exeerrorcode: 0
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | exeerrordiag: 
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | exitcode: 0
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | exitmsg: OK
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | cpuconsumptiontime: 99930 s
[2025-12-03 01:48:55] 2025-12-03 00:47:48,533 | INFO     | nevents: 1000
[2025-12-03 01:48:55] 2025-12-03 00:47:48,534 | INFO     | neventsw: 0
[2025-12-03 01:48:55] 2025-12-03 00:47:48,534 | INFO     | pid: 12563
[2025-12-03 01:48:55] 2025-12-03 00:47:48,534 | INFO     | pgrp: 12563
[2025-12-03 01:48:55] 2025-12-03 00:47:48,534 | INFO     | corecount: 8
[2025-12-03 01:48:55] 2025-12-03 00:47:48,534 | INFO     | event service: False
[2025-12-03 01:48:55] 2025-12-03 00:47:48,534 | INFO     | sizes: {0: 2284524, 2: 2284786, 11: 2284814, 13139: 2335130, 13141: 2344182, 13143: 2344238, 13147: 2344612}
[2025-12-03 01:48:55] 2025-12-03 00:47:48,534 | INFO     | --------------------------------------------------
[2025-12-03 01:48:55] 2025-12-03 00:47:48,534 | INFO     | 
[2025-12-03 01:48:55] 2025-12-03 00:47:48,534 | INFO     | executing command: ls -lF /tmp/job_10945500/atlas/pilot/slots/0
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,544 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 01:48:55] 2025-12-03 00:47:48,545 | INFO     | job 6905380004 has completed (purged errors)
[2025-12-03 01:48:55] 2025-12-03 00:47:48,545 | INFO     | overall cleanup function is called
[2025-12-03 01:48:55] 2025-12-03 00:47:49,552 | INFO     | --- collectZombieJob: --- 10, [12563]
[2025-12-03 01:48:55] 2025-12-03 00:47:49,552 | INFO     | zombie collector waiting for pid 12563
[2025-12-03 01:48:55] 2025-12-03 00:47:49,552 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 01:48:55] 2025-12-03 00:47:49,552 | INFO     | collected zombie processes
[2025-12-03 01:48:55] 2025-12-03 00:47:49,552 | INFO     | will attempt to kill all subprocesses of pid=12563
[2025-12-03 01:48:55] 2025-12-03 00:47:49,670 | INFO     | process IDs to be killed: [12563] (in reverse order)
[2025-12-03 01:48:55] 2025-12-03 00:47:49,713 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 01:48:55] 2025-12-03 00:47:49,713 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 01:48:55] 2025-12-03 00:47:49,719 | INFO     | did not find any defunct processes belonging to 12563
[2025-12-03 01:48:55] 2025-12-03 00:47:49,722 | INFO     | did not find any defunct processes belonging to 12563
[2025-12-03 01:48:55] 2025-12-03 00:47:49,723 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 01:48:55] 2025-12-03 00:47:49,723 | INFO     | ready for new job
[2025-12-03 01:48:55] 2025-12-03 00:47:49,723 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 01:48:55] 2025-12-03 00:47:49,724 | INFO     | ***************************************
[2025-12-03 01:48:55] 2025-12-03 00:47:49,724 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 01:48:55] 2025-12-03 00:47:49,724 | INFO     | ***************************************
[2025-12-03 01:48:55] 2025-12-03 00:47:49,724 | INFO     | 
[2025-12-03 01:48:55] 2025-12-03 00:47:49,738 | INFO     | architecture information:
[2025-12-03 01:48:55] 2025-12-03 00:47:49,738 | INFO     | executing command: cat /etc/os-release
[2025-12-03 01:48:55] 2025-12-03 00:47:49,744 | INFO     | cat /etc/os-release:
[2025-12-03 01:48:55] NAME="CentOS Linux"
[2025-12-03 01:48:55] VERSION="7 (Core)"
[2025-12-03 01:48:55] ID="centos"
[2025-12-03 01:48:55] ID_LIKE="rhel fedora"
[2025-12-03 01:48:55] VERSION_ID="7"
[2025-12-03 01:48:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 01:48:55] ANSI_COLOR="0;31"
[2025-12-03 01:48:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 01:48:55] HOME_URL="https://www.centos.org/"
[2025-12-03 01:48:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 01:48:55] 
[2025-12-03 01:48:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 01:48:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 01:48:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 01:48:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 01:48:55] 
[2025-12-03 01:48:55] 2025-12-03 00:47:49,744 | INFO     | ***************************************
[2025-12-03 01:48:55] 2025-12-03 00:47:50,247 | INFO     | executing command: df -mP /tmp/job_10945500/atlas/pilot/slots/0
[2025-12-03 01:48:55] 2025-12-03 00:47:50,252 | INFO     | sufficient remaining disk space (219614806016 B)
[2025-12-03 01:48:55] 2025-12-03 00:47:50,253 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 01:48:55] 2025-12-03 00:47:50,253 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 01:48:55] 2025-12-03 00:47:50,253 | INFO     | update_server=False
[2025-12-03 01:48:55] 2025-12-03 00:47:50,253 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 01:48:55] 2025-12-03 00:47:50,253 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 01:48:55] 2025-12-03 00:47:50,397 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 01:48:55] 2025-12-03 00:47:50,527 | INFO     | all job control threads have been joined
[2025-12-03 01:48:55] 2025-12-03 00:47:50,541 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 01:48:55] 2025-12-03 00:47:50,642 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 01:48:55] 2025-12-03 00:47:50,642 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 01:48:55] 2025-12-03 00:47:50,642 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 01:48:55] 2025-12-03 00:47:50,642 | INFO     | will abort loop
[2025-12-03 01:48:55] 2025-12-03 00:47:50,820 | INFO     | all data control threads have been joined
[2025-12-03 01:48:55] 2025-12-03 00:47:51,257 | INFO     | [job] retrieve thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:51,258 | INFO     | [job] queue monitor thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:51,304 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:51,324 | INFO     | [data] copytool_in thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:51,353 | INFO     | [job] validate thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:51,419 | INFO     | [payload] failed_post thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:51,532 | INFO     | [job] control thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:51,648 | INFO     | [job] job monitor thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:51,746 | INFO     | all payload control threads have been joined
[2025-12-03 01:48:55] 2025-12-03 00:47:51,825 | INFO     | [data] control thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:52,042 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:52,057 | INFO     | [payload] validate_post thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:52,402 | INFO     | [data] copytool_out thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:52,438 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:52,524 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:52,751 | INFO     | [payload] control thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:47:54,546 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 01:48:55] 2025-12-03 00:48:20,512 | INFO     | PID=3264 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-03 01:48:55] 2025-12-03 00:48:20,512 | INFO     | .. there are 7 such processes running
[2025-12-03 01:48:55] 2025-12-03 00:48:20,512 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 01:48:55] 2025-12-03 00:48:20,512 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 01:48:55] 2025-12-03 00:48:20,512 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 01:48:55] 2025-12-03 00:48:49,571 | INFO     | [monitor] cgroup control has ended
[2025-12-03 01:48:55] 2025-12-03 00:48:50,432 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456056616704)>']
[2025-12-03 01:48:55] 2025-12-03 00:48:50,662 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 01:48:55] 2025-12-03 00:48:50,662 | INFO     | [monitor] control thread has ended
[2025-12-03 01:48:55] 2025-12-03 00:48:55,457 | INFO     | all workflow threads have been joined
[2025-12-03 01:48:55] 2025-12-03 00:48:55,458 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 01:48:55] 2025-12-03 00:48:55,458 | INFO     | traces error code: 0
[2025-12-03 01:48:55] 2025-12-03 00:48:55,458 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 01:48:55] 2025-12-03 00:48:55,510 [wrapper] ==== pilot stdout END ====
[2025-12-03 01:48:55] 2025-12-03 00:48:55,512 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 01:48:55] 2025-12-03 00:48:55,513 [wrapper] pilotpid: 3264
[2025-12-03 01:48:55] 2025-12-03 00:48:55,515 [wrapper] Pilot exit status: 0
[2025-12-03 01:48:55] 2025-12-03 00:48:55,519 [wrapper] pandaids: 6905380004
[2025-12-03 01:48:55] 2025-12-03 00:48:55,546 [wrapper] cleanup supervisor_pilot 32293 3265
[2025-12-03 01:48:55] 2025-12-03 00:48:55,547 [wrapper] Test setup, not cleaning
[2025-12-03 01:48:55] 2025-12-03 00:48:55,548 [wrapper] apfmon messages muted
[2025-12-03 01:48:55] 2025-12-03 00:48:55,549 [wrapper] ==== wrapper stdout END ====
[2025-12-03 01:48:55] 2025-12-03 00:48:55,550 [wrapper] ==== wrapper stderr END ====
[2025-12-03 01:48:55]  *** Error codes and diagnostics ***
[2025-12-03 01:48:55]     "exeErrorCode": 0,
[2025-12-03 01:48:55]     "exeErrorDiag": "",
[2025-12-03 01:48:55]     "pilotErrorCode": 0,
[2025-12-03 01:48:55]     "pilotErrorDiag": "",
[2025-12-03 01:48:55]  *** Listing of results directory ***
[2025-12-03 01:48:55] total 1058000
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-03 01:48:55] -rwx------ 1 mf493845 unix-user     36292 Nov 30 01:18 runpilot2-wrapper.sh
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user      5112 Nov 30 01:23 queuedata.json
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user       100 Dec  2 20:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 01:48:55] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 20:33 run_atlas
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user       105 Dec  2 20:33 job.xml
[2025-12-03 01:48:55] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 22:08 start_atlas.sh
[2025-12-03 01:48:55] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 22:08 shared
[2025-12-03 01:48:55] -rw-r--r-- 2 mf493845 unix-user    590132 Dec  2 22:08 input.tar.gz
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user      6392 Dec  2 22:08 init_data.xml
[2025-12-03 01:48:55] -rw-r--r-- 2 mf493845 unix-user 373496369 Dec  2 22:08 EVNT.47530720._000069.pool.root.1
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user         0 Dec  2 22:08 boinc_setup_complete
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user      8192 Dec  2 22:08 boinc_mmap_file
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user         0 Dec  2 22:08 boinc_lockfile
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user      2877 Dec  2 22:08 pandaJob.out
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user    989224 Dec  2 22:08 agis_schedconf.cvmfs.json
[2025-12-03 01:48:55] drwx------ 5 mf493845 unix-user       440 Dec  2 22:08 pilot3
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user 698929126 Dec  3 01:47 HITS.47530725._002496.pool.root.1
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user        95 Dec  3 01:47 pilot_heartbeat.json
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user      1039 Dec  3 01:47 memory_monitor_summary.json
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user   1516240 Dec  3 01:47 agis_ddmendpoints.agis.ALL.json
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user   1618567 Dec  3 01:47 log.47530725._002496.job.log.tgz.1
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user     27980 Dec  3 01:47 heartbeat.json
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user      5020 Dec  3 01:48 pilotlog.txt
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user   1903514 Dec  3 01:48 log.47530725._002496.job.log.1
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user       353 Dec  3 01:48 output.list
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user       620 Dec  3 01:48 runtime_log
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user   3563520 Dec  3 01:48 result.tar.gz
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user      9221 Dec  3 01:48 runtime_log.err
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user       651 Dec  3 01:48 bdANDmAKkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmi2LKDmahk2Em.diag
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user     21693 Dec  3 01:48 stderr.txt
[2025-12-03 01:48:55] HITS file was successfully produced:
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user 698929126 Dec  3 01:47 shared/HITS.pool.root.1
[2025-12-03 01:48:55]  *** Contents of shared directory: ***
[2025-12-03 01:48:55] total 1051368
[2025-12-03 01:48:55] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 22:08 start_atlas.sh
[2025-12-03 01:48:55] -rw-r--r-- 2 mf493845 unix-user    590132 Dec  2 22:08 input.tar.gz
[2025-12-03 01:48:55] -rw-r--r-- 2 mf493845 unix-user 373496369 Dec  2 22:08 ATLAS.root_0
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user 698929126 Dec  3 01:47 HITS.pool.root.1
[2025-12-03 01:48:55] -rw------- 1 mf493845 unix-user   3563520 Dec  3 01:48 result.tar.gz
01:48:57 (30720): run_atlas exited; CPU time 100066.813747
01:48:57 (30720): called boinc_finish(0)

</stderr_txt>
]]>

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