Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:04:35 (573839): wrapper (7.7.26015): starting
13:04:35 (573839): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 13:04:35] Arguments: --nthreads 8
[2025-12-02 13:04:35] Threads: 8
[2025-12-02 13:04:35] Checking for CVMFS
[2025-12-02 13:04:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 13:04:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 13:04:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 13:04:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 13:04:37] 2.13.3.0 14328 39004 280476 153564 3 509 21950830 40960001 56681 16776704 0 496063064 99.725 355321811 48948 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 13:04:37] CVMFS is ok
[2025-12-02 13:04:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 13:04:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 13:04:37] Further information can be found at the LHC@home message board.
[2025-12-02 13:04:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 13:04:37] Checking for apptainer binary...
[2025-12-02 13:04:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 13:04:37] Running /usr/bin/apptainer --version
[2025-12-02 13:04:37] apptainer version 1.4.4-1.el9
[2025-12-02 13:04:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 13:04:38] c8-16-2.aglt2.org
[2025-12-02 13:04:38] apptainer works
[2025-12-02 13:04:38] Set ATHENA_PROC_NUMBER=8
[2025-12-02 13:04:38] Set ATHENA_CORE_NUMBER=8
[2025-12-02 13:04:38] Starting ATLAS job with PandaID=6895352795
[2025-12-02 13:04:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 03:47:35]  *** The last 200 lines of the pilot log: ***
[2025-12-03 03:47:35] 2025-12-03 08:46:38,990 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 03:47:35] 2025-12-03 08:46:39,928 | INFO     | PID=596662 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 03:47:35] 2025-12-03 08:46:39,928 | INFO     | .. there are 39 such processes running
[2025-12-03 03:47:35] 2025-12-03 08:46:40,934 | INFO     | time since job start (52846s) is within the limit (172800.0s)
[2025-12-03 03:47:35] 2025-12-03 08:46:41,502 | INFO     | monitor loop #2966: job 0:6895352795 is in state 'finished'
[2025-12-03 03:47:35] 2025-12-03 08:46:41,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 03:47:35] 2025-12-03 08:46:42,941 | INFO     | time since job start (52848s) is within the limit (172800.0s)
[2025-12-03 03:47:35] 2025-12-03 08:46:44,007 | INFO     | monitor loop #2967: job 0:6895352795 is in state 'finished'
[2025-12-03 03:47:35] 2025-12-03 08:46:44,007 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 03:47:35] 2025-12-03 08:46:44,948 | INFO     | time since job start (52850s) is within the limit (172800.0s)
[2025-12-03 03:47:35] 2025-12-03 08:46:46,512 | INFO     | monitor loop #2968: job 0:6895352795 is in state 'finished'
[2025-12-03 03:47:35] 2025-12-03 08:46:46,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 03:47:35] 2025-12-03 08:46:46,955 | INFO     | time since job start (52852s) is within the limit (172800.0s)
[2025-12-03 03:47:35] 2025-12-03 08:46:48,965 | INFO     | time since job start (52854s) is within the limit (172800.0s)
[2025-12-03 03:47:35] 2025-12-03 08:46:49,017 | INFO     | monitor loop #2969: job 0:6895352795 is in state 'finished'
[2025-12-03 03:47:35] 2025-12-03 08:46:49,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 03:47:35] 2025-12-03 08:46:50,819 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 03:47:35] 2025-12-03 08:46:50,838 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3752.9486640625
[2025-12-03 03:47:35] 2025-12-03 08:46:50,904 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895352795/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 03:47:35] 2025-12-03 08:46:50,904 | INFO     | extracted standard info from prmon json
[2025-12-03 03:47:35] 2025-12-03 08:46:50,905 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 03:47:35] 2025-12-03 08:46:50,905 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 03:47:35] 2025-12-03 08:46:50,933 | INFO     | fitting pss+swap vs Time
[2025-12-03 03:47:35] 2025-12-03 08:46:50,947 | INFO     | sum of square deviations: 198603663622.06516
[2025-12-03 03:47:35] 2025-12-03 08:46:50,992 | INFO     | time since job start (52856s) is within the limit (172800.0s)
[2025-12-03 03:47:35] 2025-12-03 08:46:50,994 | INFO     | sum of deviations: 633095232726.0286
[2025-12-03 03:47:35] 2025-12-03 08:46:50,994 | INFO     | mean x: 1764725270.7958236
[2025-12-03 03:47:35] 2025-12-03 08:46:50,994 | INFO     | mean y: 2858133.3410672853
[2025-12-03 03:47:35] 2025-12-03 08:46:50,994 | INFO     | intersect: -5622612895.924774
[2025-12-03 03:47:35] 2025-12-03 08:46:50,994 | INFO     | chi2: 18.56829522191667
[2025-12-03 03:47:35] 2025-12-03 08:46:50,995 | INFO     | sum of square deviations: 195167930571.12042
[2025-12-03 03:47:35] 2025-12-03 08:46:51,056 | INFO     | sum of deviations: 919203361271.282
[2025-12-03 03:47:35] 2025-12-03 08:46:51,056 | INFO     | mean x: 1764725118.3033838
[2025-12-03 03:47:35] 2025-12-03 08:46:51,056 | INFO     | mean y: 2870828.9719953327
[2025-12-03 03:47:35] 2025-12-03 08:46:51,057 | INFO     | intersect: -8308644570.701788
[2025-12-03 03:47:35] 2025-12-03 08:46:51,057 | INFO     | chi2: 15.292610192901279
[2025-12-03 03:47:35] 2025-12-03 08:46:51,057 | INFO     | current chi2=15.292610192901279 (change=17.64128041840379 %)
[2025-12-03 03:47:35] 2025-12-03 08:46:51,057 | INFO     | right removable region: 856
[2025-12-03 03:47:35] 2025-12-03 08:46:51,058 | INFO     | sum of square deviations: 195167249201.12042
[2025-12-03 03:47:35] 2025-12-03 08:46:51,088 | INFO     | sum of deviations: 289981277497.71674
[2025-12-03 03:47:35] 2025-12-03 08:46:51,089 | INFO     | mean x: 1764725423.3033838
[2025-12-03 03:47:35] 2025-12-03 08:46:51,089 | INFO     | mean y: 2873357.0280046673
[2025-12-03 03:47:35] 2025-12-03 08:46:51,089 | INFO     | intersect: -2619171759.542078
[2025-12-03 03:47:35] 2025-12-03 08:46:51,089 | INFO     | chi2: 14.45796525431777
[2025-12-03 03:47:35] 2025-12-03 08:46:51,090 | INFO     | current chi2=14.45796525431777 (change=22.13628078654935 %)
[2025-12-03 03:47:35] 2025-12-03 08:46:51,090 | INFO     | left removable region: 10
[2025-12-03 03:47:35] 2025-12-03 08:46:51,095 | INFO     | sum of square deviations: 187747990807.3273
[2025-12-03 03:47:35] 2025-12-03 08:46:51,112 | INFO     | sum of deviations: 406146925740.4892
[2025-12-03 03:47:35] 2025-12-03 08:46:51,112 | INFO     | mean x: 1764725392.819149
[2025-12-03 03:47:35] 2025-12-03 08:46:51,112 | INFO     | mean y: 2898888.7352245864
[2025-12-03 03:47:35] 2025-12-03 08:46:51,112 | INFO     | intersect: -3814653512.159508
[2025-12-03 03:47:35] 2025-12-03 08:46:51,112 | INFO     | chi2: 8.61273278714468
[2025-12-03 03:47:35] 2025-12-03 08:46:51,113 | INFO     | current memory leak: 2.16 B/s (using 846 data points, chi2=8.61)
[2025-12-03 03:47:35] 2025-12-03 08:46:51,114 | INFO     | could have reported an average CPU frequency of 3792 MHz (32 samples)
[2025-12-03 03:47:35] 2025-12-03 08:46:51,114 | INFO     | ..............................
[2025-12-03 03:47:35] 2025-12-03 08:46:51,114 | INFO     | . Timing measurements:
[2025-12-03 03:47:35] 2025-12-03 08:46:51,114 | INFO     | . get job = 0 s
[2025-12-03 03:47:35] 2025-12-03 08:46:51,114 | INFO     | . initial setup = 5 s
[2025-12-03 03:47:35] 2025-12-03 08:46:51,114 | INFO     | . payload setup = 90 s
[2025-12-03 03:47:35] 2025-12-03 08:46:51,114 | INFO     | . stage-in = 0 s
[2025-12-03 03:47:35] 2025-12-03 08:46:51,114 | INFO     | . payload execution = 52598 s
[2025-12-03 03:47:35] 2025-12-03 08:46:51,114 | INFO     | . stage-out = 9 s
[2025-12-03 03:47:35] 2025-12-03 08:46:51,114 | INFO     | . log creation = 3 s
[2025-12-03 03:47:35] 2025-12-03 08:46:51,114 | INFO     | ..............................
[2025-12-03 03:47:35] 2025-12-03 08:46:51,559 | INFO     | 
[2025-12-03 03:47:35] 2025-12-03 08:46:51,559 | INFO     | job summary report
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | --------------------------------------------------
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | PanDA job id: 6895352795
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | task id: 47556137
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | errors: (none)
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | pilot state: finished 
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | transexitcode: 0
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | exeerrorcode: 0
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | exeerrordiag: 
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | exitcode: 0
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | exitmsg: OK
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | cpuconsumptiontime: 135701 s
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | nevents: 1000
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | neventsw: 0
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | pid: 697631
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | pgrp: 697631
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | corecount: 8
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | event service: False
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | sizes: {0: 2284031, 1: 2284286, 2: 2284286, 12: 2284314, 23: 2284342, 34: 2284370, 45: 2284526, 46: 2284816, 56: 2284844, 52694: 2332543, 52695: 2332542, 52706: 23
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | --------------------------------------------------
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | 
[2025-12-03 03:47:35] 2025-12-03 08:46:51,560 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-12-03 03:47:35] 2025-12-03 08:46:51,795 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,796 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 03:47:35] 2025-12-03 08:46:51,797 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,797 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 03:47:35] 2025-12-03 08:46:51,797 | INFO     | job 6895352795 has completed (purged errors)
[2025-12-03 03:47:35] 2025-12-03 08:46:51,797 | INFO     | overall cleanup function is called
[2025-12-03 03:47:35] 2025-12-03 08:46:52,889 | INFO     | --- collectZombieJob: --- 10, [697631]
[2025-12-03 03:47:35] 2025-12-03 08:46:52,889 | INFO     | zombie collector waiting for pid 697631
[2025-12-03 03:47:35] 2025-12-03 08:46:52,889 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 03:47:35] 2025-12-03 08:46:52,889 | INFO     | collected zombie processes
[2025-12-03 03:47:35] 2025-12-03 08:46:52,889 | INFO     | will attempt to kill all subprocesses of pid=697631
[2025-12-03 03:47:35] 2025-12-03 08:46:54,307 | INFO     | process IDs to be killed: [697631] (in reverse order)
[2025-12-03 03:47:35] 2025-12-03 08:46:54,736 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 03:47:35] 2025-12-03 08:46:54,736 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 03:47:35] 2025-12-03 08:46:54,763 | INFO     | did not find any defunct processes belonging to 697631
[2025-12-03 03:47:35] 2025-12-03 08:46:54,787 | INFO     | did not find any defunct processes belonging to 697631
[2025-12-03 03:47:35] 2025-12-03 08:46:54,790 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 03:47:35] 2025-12-03 08:46:54,792 | INFO     | ready for new job
[2025-12-03 03:47:35] 2025-12-03 08:46:54,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 03:47:35] 2025-12-03 08:46:54,803 | INFO     | ***************************************
[2025-12-03 03:47:35] 2025-12-03 08:46:54,810 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 03:47:35] 2025-12-03 08:46:54,810 | INFO     | ***************************************
[2025-12-03 03:47:35] 2025-12-03 08:46:54,810 | INFO     | 
[2025-12-03 03:47:35] 2025-12-03 08:46:54,818 | INFO     | architecture information:
[2025-12-03 03:47:35] 2025-12-03 08:46:54,823 | INFO     | executing command: cat /etc/os-release
[2025-12-03 03:47:35] 2025-12-03 08:46:54,885 | INFO     | cat /etc/os-release:
[2025-12-03 03:47:35] NAME="CentOS Linux"
[2025-12-03 03:47:35] VERSION="7 (Core)"
[2025-12-03 03:47:35] ID="centos"
[2025-12-03 03:47:35] ID_LIKE="rhel fedora"
[2025-12-03 03:47:35] VERSION_ID="7"
[2025-12-03 03:47:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 03:47:35] ANSI_COLOR="0;31"
[2025-12-03 03:47:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 03:47:35] HOME_URL="https://www.centos.org/"
[2025-12-03 03:47:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 03:47:35] 
[2025-12-03 03:47:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 03:47:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 03:47:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 03:47:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 03:47:35] 
[2025-12-03 03:47:35] 2025-12-03 08:46:54,885 | INFO     | ***************************************
[2025-12-03 03:47:35] 2025-12-03 08:46:55,388 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-12-03 03:47:35] 2025-12-03 08:46:55,440 | INFO     | sufficient remaining disk space (161427226624 B)
[2025-12-03 03:47:35] 2025-12-03 08:46:55,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 03:47:35] 2025-12-03 08:46:55,442 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 03:47:35] 2025-12-03 08:46:55,442 | INFO     | update_server=False
[2025-12-03 03:47:35] 2025-12-03 08:46:55,442 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 03:47:35] 2025-12-03 08:46:55,454 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 03:47:35] 2025-12-03 08:46:55,455 | INFO     | aborting loop
[2025-12-03 03:47:35] 2025-12-03 08:46:55,756 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 03:47:35] 2025-12-03 08:46:55,812 | INFO     | all data control threads have been joined
[2025-12-03 03:47:35] 2025-12-03 08:46:56,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 03:47:35] 2025-12-03 08:46:56,447 | INFO     | [job] retrieve thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:56,460 | INFO     | [job] job monitor thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:56,537 | INFO     | all payload control threads have been joined
[2025-12-03 03:47:35] 2025-12-03 08:46:56,553 | INFO     | [payload] validate_post thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:56,737 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:56,819 | INFO     | [data] control thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:56,859 | INFO     | [job] validate thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:57,159 | INFO     | all job control threads have been joined
[2025-12-03 03:47:35] 2025-12-03 08:46:57,247 | INFO     | [job] queue monitor thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:57,335 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:57,543 | INFO     | [payload] control thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:57,611 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:57,683 | INFO     | [payload] failed_post thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:57,763 | INFO     | [data] copytool_out thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:57,829 | INFO     | [data] copytool_in thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:57,927 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:58,166 | INFO     | [job] control thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:46:58,746 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 03:47:35] 2025-12-03 08:47:02,768 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 03:47:35] 2025-12-03 08:47:26,411 | INFO     | [monitor] cgroup control has ended
[2025-12-03 03:47:35] 2025-12-03 08:47:26,586 | INFO     | PID=596662 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 03:47:35] 2025-12-03 08:47:26,586 | INFO     | .. there are 38 such processes running
[2025-12-03 03:47:35] 2025-12-03 08:47:26,586 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 03:47:35] 2025-12-03 08:47:26,586 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 03:47:35] 2025-12-03 08:47:26,586 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 03:47:35] 2025-12-03 08:47:27,705 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139933598676800)>', '<ExcThread(monitor, started 139932978898688)>']
[2025-12-03 03:47:35] 2025-12-03 08:47:28,598 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 03:47:35] 2025-12-03 08:47:28,598 | INFO     | [monitor] control thread has ended
[2025-12-03 03:47:35] 2025-12-03 08:47:32,731 | INFO     | all workflow threads have been joined
[2025-12-03 03:47:35] 2025-12-03 08:47:32,731 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 03:47:35] 2025-12-03 08:47:32,732 | INFO     | traces error code: 0
[2025-12-03 03:47:35] 2025-12-03 08:47:32,732 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 03:47:35] 2025-12-03 08:47:33,860 [wrapper] ==== pilot stdout END ====
[2025-12-03 03:47:35] 2025-12-03 08:47:33,906 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 03:47:35] 2025-12-03 08:47:33,939 [wrapper] pilotpid: 596662
[2025-12-03 03:47:35] 2025-12-03 08:47:33,983 [wrapper] Pilot exit status: 0
[2025-12-03 03:47:35] 2025-12-03 08:47:34,090 [wrapper] pandaids: 6895352795
[2025-12-03 03:47:35] 2025-12-03 08:47:34,359 [wrapper] cleanup supervisor_pilot  315924 596663
[2025-12-03 03:47:35] 2025-12-03 08:47:34,386 [wrapper] Test setup, not cleaning
[2025-12-03 03:47:35] 2025-12-03 08:47:34,415 [wrapper] apfmon messages muted
[2025-12-03 03:47:35] 2025-12-03 08:47:34,453 [wrapper] ==== wrapper stdout END ====
[2025-12-03 03:47:35] 2025-12-03 08:47:34,487 [wrapper] ==== wrapper stderr END ====
[2025-12-03 03:47:35]  *** Error codes and diagnostics ***
[2025-12-03 03:47:35]     "exeErrorCode": 0,
[2025-12-03 03:47:35]     "exeErrorDiag": "",
[2025-12-03 03:47:35]     "pilotErrorCode": 0,
[2025-12-03 03:47:35]     "pilotErrorDiag": "",
[2025-12-03 03:47:35]  *** Listing of results directory ***
[2025-12-03 03:47:35] total 1297328
[2025-12-03 03:47:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 22:47 queuedata.json
[2025-12-03 03:47:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 22:47 pilot3.tar.gz
[2025-12-03 03:47:35] -rwx------. 1 boincer umatlas     36292 Nov 22 22:48 runpilot2-wrapper.sh
[2025-12-03 03:47:35] -rw-r--r--. 1 boincer umatlas       100 Dec  2 13:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 03:47:35] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 13:04 run_atlas
[2025-12-03 03:47:35] -rw-r--r--. 1 boincer umatlas       105 Dec  2 13:04 job.xml
[2025-12-03 03:47:35] -rw-r--r--. 2 boincer umatlas 410422169 Dec  2 13:04 EVNT.47483658._000603.pool.root.1
[2025-12-03 03:47:35] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 13:04 start_atlas.sh
[2025-12-03 03:47:35] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 13:04 shared
[2025-12-03 03:47:35] -rw-r--r--. 2 boincer umatlas    590100 Dec  2 13:04 input.tar.gz
[2025-12-03 03:47:35] -rw-r--r--. 1 boincer umatlas         0 Dec  2 13:04 boinc_lockfile
[2025-12-03 03:47:35] -rw-r--r--. 1 boincer umatlas      2782 Dec  2 13:04 pandaJob.out
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas        57 Dec  2 13:04 setup.sh.local
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas    988858 Dec  2 13:05 agis_schedconf.cvmfs.json
[2025-12-03 03:47:35] drwx------. 5 boincer umatlas      4096 Dec  2 13:05 pilot3
[2025-12-03 03:47:35] -rw-r--r--. 1 boincer umatlas       532 Dec  3 03:17 boinc_task_state.xml
[2025-12-03 03:47:35] -rw-r--r--. 1 boincer umatlas      7174 Dec  3 03:41 init_data.xml
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas 897372996 Dec  3 03:44 HITS.47556137._005981.pool.root.1
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas      1074 Dec  3 03:45 memory_monitor_summary.json
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas   1516240 Dec  3 03:46 agis_ddmendpoints.agis.ALL.json
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas   2009663 Dec  3 03:46 log.47556137._005981.job.log.tgz.1
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas        95 Dec  3 03:46 pilot_heartbeat.json
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas      7947 Dec  3 03:46 heartbeat.json
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas      4824 Dec  3 03:47 pilotlog.txt
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas   6367420 Dec  3 03:47 log.47556137._005981.job.log.1
[2025-12-03 03:47:35] -rw-r--r--. 1 boincer umatlas        29 Dec  3 03:47 wrapper_checkpoint.txt
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas       353 Dec  3 03:47 output.list
[2025-12-03 03:47:35] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 03:47 boinc_mmap_file
[2025-12-03 03:47:35] -rw-r--r--. 1 boincer umatlas       620 Dec  3 03:47 runtime_log
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas   8396800 Dec  3 03:47 result.tar.gz
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas       665 Dec  3 03:47 yqXLDmZGGh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBbKKDmoA7Vrm.diag
[2025-12-03 03:47:35] -rw-r--r--. 1 boincer umatlas      9338 Dec  3 03:47 runtime_log.err
[2025-12-03 03:47:35] -rw-r--r--. 1 boincer umatlas     21880 Dec  3 03:47 stderr.txt
[2025-12-03 03:47:35] HITS file was successfully produced:
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas 897372996 Dec  3 03:44 shared/HITS.pool.root.1
[2025-12-03 03:47:35]  *** Contents of shared directory: ***
[2025-12-03 03:47:35] total 1285952
[2025-12-03 03:47:35] -rw-r--r--. 2 boincer umatlas 410422169 Dec  2 13:04 ATLAS.root_0
[2025-12-03 03:47:35] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 13:04 start_atlas.sh
[2025-12-03 03:47:35] -rw-r--r--. 2 boincer umatlas    590100 Dec  2 13:04 input.tar.gz
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas 897372996 Dec  3 03:44 HITS.pool.root.1
[2025-12-03 03:47:35] -rw-------. 1 boincer umatlas   8396800 Dec  3 03:47 result.tar.gz
03:47:36 (573839): run_atlas exited; CPU time 136758.352240
03:47:36 (573839): called boinc_finish(0)

</stderr_txt>
]]>

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