Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:47:05 (3392886): wrapper (7.7.26015): starting
12:47:05 (3392886): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 12:47:05] Arguments: --nthreads 8
[2025-12-02 12:47:05] Threads: 8
[2025-12-02 12:47:05] Checking for CVMFS
[2025-12-02 12:47:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 12:47:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 12:47:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 12:47:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 12:47:06] 2.13.3.0 12357 38962 299404 153564 3 473 25951852 32503809 54475 16776704 0 623008209 99.632 549582205 45417 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 12:47:06] CVMFS is ok
[2025-12-02 12:47:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 12:47:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 12:47:06] Further information can be found at the LHC@home message board.
[2025-12-02 12:47:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 12:47:06] Checking for apptainer binary...
[2025-12-02 12:47:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 12:47:06] Running /usr/bin/apptainer --version
[2025-12-02 12:47:06] apptainer version 1.4.4-1.el9
[2025-12-02 12:47:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 12:47:07] c8-7-2.aglt2.org
[2025-12-02 12:47:07] apptainer works
[2025-12-02 12:47:07] Set ATHENA_PROC_NUMBER=8
[2025-12-02 12:47:07] Set ATHENA_CORE_NUMBER=8
[2025-12-02 12:47:07] Starting ATLAS job with PandaID=6895335028
[2025-12-02 12:47:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 01:51:14]  *** The last 200 lines of the pilot log: ***
[2025-12-03 01:51:14] 2025-12-03 06:50:04,143 | INFO     | monitor loop #2432: job 0:6895335028 is in state 'finished'
[2025-12-03 01:51:14] 2025-12-03 06:50:04,143 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 01:51:14] 2025-12-03 06:50:04,755 | INFO     | time since job start (46881s) is within the limit (172800.0s)
[2025-12-03 01:51:14] 2025-12-03 06:50:06,660 | INFO     | monitor loop #2433: job 0:6895335028 is in state 'finished'
[2025-12-03 01:51:14] 2025-12-03 06:50:06,660 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 01:51:14] 2025-12-03 06:50:06,762 | INFO     | time since job start (46883s) is within the limit (172800.0s)
[2025-12-03 01:51:14] 2025-12-03 06:50:08,768 | INFO     | time since job start (46885s) is within the limit (172800.0s)
[2025-12-03 01:51:14] 2025-12-03 06:50:09,171 | INFO     | monitor loop #2434: job 0:6895335028 is in state 'finished'
[2025-12-03 01:51:14] 2025-12-03 06:50:09,171 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 01:51:14] 2025-12-03 06:50:10,773 | INFO     | time since job start (46887s) is within the limit (172800.0s)
[2025-12-03 01:51:14] 2025-12-03 06:50:11,678 | INFO     | monitor loop #2435: job 0:6895335028 is in state 'finished'
[2025-12-03 01:51:14] 2025-12-03 06:50:11,678 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 01:51:14] 2025-12-03 06:50:12,784 | INFO     | time since job start (46889s) is within the limit (172800.0s)
[2025-12-03 01:51:14] 2025-12-03 06:50:12,900 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 01:51:14] 2025-12-03 06:50:12,905 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9901171875003
[2025-12-03 01:51:14] 2025-12-03 06:50:12,919 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895335028/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 01:51:14] 2025-12-03 06:50:12,919 | INFO     | extracted standard info from prmon json
[2025-12-03 01:51:14] 2025-12-03 06:50:12,919 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 01:51:14] 2025-12-03 06:50:12,919 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 01:51:14] 2025-12-03 06:50:12,926 | INFO     | fitting pss+swap vs Time
[2025-12-03 01:51:14] 2025-12-03 06:50:12,927 | INFO     | sum of square deviations: 138818538912.75238
[2025-12-03 01:51:14] 2025-12-03 06:50:12,933 | INFO     | sum of deviations: 947940366266.209
[2025-12-03 01:51:14] 2025-12-03 06:50:12,933 | INFO     | mean x: 1764721241.592157
[2025-12-03 01:51:14] 2025-12-03 06:50:12,934 | INFO     | mean y: 2820769.734640523
[2025-12-03 01:51:14] 2025-12-03 06:50:12,934 | INFO     | intersect: -12047806712.838251
[2025-12-03 01:51:14] 2025-12-03 06:50:12,934 | INFO     | chi2: 23.867300076494214
[2025-12-03 01:51:14] 2025-12-03 06:50:12,934 | INFO     | sum of square deviations: 136114636429.99478
[2025-12-03 01:51:14] 2025-12-03 06:50:12,941 | INFO     | sum of deviations: 1216700840254.0786
[2025-12-03 01:51:14] 2025-12-03 06:50:12,941 | INFO     | mean x: 1764721089.1026316
[2025-12-03 01:51:14] 2025-12-03 06:50:12,941 | INFO     | mean y: 2835932.960526316
[2025-12-03 01:51:14] 2025-12-03 06:50:12,942 | INFO     | intersect: -15771644227.588266
[2025-12-03 01:51:14] 2025-12-03 06:50:12,942 | INFO     | chi2: 20.118698390570366
[2025-12-03 01:51:14] 2025-12-03 06:50:12,942 | INFO     | current chi2=20.118698390570366 (change=15.70601481487079 %)
[2025-12-03 01:51:14] 2025-12-03 06:50:12,942 | INFO     | right removable region: 759
[2025-12-03 01:51:14] 2025-12-03 06:50:12,942 | INFO     | sum of square deviations: 136113893449.99486
[2025-12-03 01:51:14] 2025-12-03 06:50:12,950 | INFO     | sum of deviations: 636046125292.6434
[2025-12-03 01:51:14] 2025-12-03 06:50:12,950 | INFO     | mean x: 1764721394.1026316
[2025-12-03 01:51:14] 2025-12-03 06:50:12,950 | INFO     | mean y: 2838353.927631579
[2025-12-03 01:51:14] 2025-12-03 06:50:12,950 | INFO     | intersect: -8243521929.288947
[2025-12-03 01:51:14] 2025-12-03 06:50:12,951 | INFO     | chi2: 19.27452536991918
[2025-12-03 01:51:14] 2025-12-03 06:50:12,951 | INFO     | current chi2=19.27452536991918 (change=19.2429587421086 %)
[2025-12-03 01:51:14] 2025-12-03 06:50:12,951 | INFO     | left removable region: 10
[2025-12-03 01:51:14] 2025-12-03 06:50:12,951 | INFO     | sum of square deviations: 130288667799.32736
[2025-12-03 01:51:14] 2025-12-03 06:50:12,958 | INFO     | sum of deviations: 672210546458.8976
[2025-12-03 01:51:14] 2025-12-03 06:50:12,958 | INFO     | mean x: 1764721363.6261683
[2025-12-03 01:51:14] 2025-12-03 06:50:12,958 | INFO     | mean y: 2873889.688918558
[2025-12-03 01:51:14] 2025-12-03 06:50:12,958 | INFO     | intersect: -9102018594.26786
[2025-12-03 01:51:14] 2025-12-03 06:50:12,958 | INFO     | chi2: 10.755749663942638
[2025-12-03 01:51:14] 2025-12-03 06:50:12,958 | INFO     | current memory leak: 5.16 B/s (using 749 data points, chi2=10.76)
[2025-12-03 01:51:14] 2025-12-03 06:50:12,959 | INFO     | could have reported an average CPU frequency of 3797 MHz (29 samples)
[2025-12-03 01:51:14] 2025-12-03 06:50:12,959 | INFO     | ..............................
[2025-12-03 01:51:14] 2025-12-03 06:50:12,959 | INFO     | . Timing measurements:
[2025-12-03 01:51:14] 2025-12-03 06:50:12,959 | INFO     | . get job = 0 s
[2025-12-03 01:51:14] 2025-12-03 06:50:12,959 | INFO     | . initial setup = 7 s
[2025-12-03 01:51:14] 2025-12-03 06:50:12,959 | INFO     | . payload setup = 61 s
[2025-12-03 01:51:14] 2025-12-03 06:50:12,960 | INFO     | . stage-in = 0 s
[2025-12-03 01:51:14] 2025-12-03 06:50:12,960 | INFO     | . payload execution = 46700 s
[2025-12-03 01:51:14] 2025-12-03 06:50:12,960 | INFO     | . stage-out = 3 s
[2025-12-03 01:51:14] 2025-12-03 06:50:12,960 | INFO     | . log creation = 0 s
[2025-12-03 01:51:14] 2025-12-03 06:50:12,960 | INFO     | ..............................
[2025-12-03 01:51:14] 2025-12-03 06:50:13,017 | INFO     | 
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | job summary report
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | --------------------------------------------------
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | PanDA job id: 6895335028
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | task id: 47556137
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | errors: (none)
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | pilot state: finished 
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | transexitcode: 0
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | exeerrorcode: 0
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | exeerrordiag: 
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | exitcode: 0
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | exitmsg: OK
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | cpuconsumptiontime: 137085 s
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | nevents: 1000
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | neventsw: 0
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | pid: 3465856
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | pgrp: 3465856
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | corecount: 8
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | event service: False
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | sizes: {0: 2284314, 11: 2284314, 22: 2284342, 33: 2284370, 44: 2284426, 50: 2284716, 54: 2284872, 46766: 2330769, 46769: 2339763, 46771: 2339819, 46788: 2340065}
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | --------------------------------------------------
[2025-12-03 01:51:14] 2025-12-03 06:50:13,018 | INFO     | 
[2025-12-03 01:51:14] 2025-12-03 06:50:13,019 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,037 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,038 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,038 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 01:51:14] 2025-12-03 06:50:13,038 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,038 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 01:51:14] 2025-12-03 06:50:13,038 | INFO     | job 6895335028 has completed (purged errors)
[2025-12-03 01:51:14] 2025-12-03 06:50:13,038 | INFO     | overall cleanup function is called
[2025-12-03 01:51:14] 2025-12-03 06:50:14,057 | INFO     | --- collectZombieJob: --- 10, [3465856]
[2025-12-03 01:51:14] 2025-12-03 06:50:14,057 | INFO     | zombie collector waiting for pid 3465856
[2025-12-03 01:51:14] 2025-12-03 06:50:14,057 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 01:51:14] 2025-12-03 06:50:14,057 | INFO     | collected zombie processes
[2025-12-03 01:51:14] 2025-12-03 06:50:14,057 | INFO     | will attempt to kill all subprocesses of pid=3465856
[2025-12-03 01:51:14] 2025-12-03 06:50:15,358 | INFO     | PID=3416925 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 01:51:14] 2025-12-03 06:50:15,358 | INFO     | .. there are 46 such processes running
[2025-12-03 01:51:14] 2025-12-03 06:50:15,476 | INFO     | process IDs to be killed: [3465856] (in reverse order)
[2025-12-03 01:51:14] 2025-12-03 06:50:15,855 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 01:51:14] 2025-12-03 06:50:15,856 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 01:51:14] 2025-12-03 06:50:15,888 | INFO     | did not find any defunct processes belonging to 3465856
[2025-12-03 01:51:14] 2025-12-03 06:50:15,957 | INFO     | did not find any defunct processes belonging to 3465856
[2025-12-03 01:51:14] 2025-12-03 06:50:16,015 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 01:51:14] 2025-12-03 06:50:16,015 | INFO     | ready for new job
[2025-12-03 01:51:14] 2025-12-03 06:50:16,015 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 01:51:14] 2025-12-03 06:50:16,018 | INFO     | ***************************************
[2025-12-03 01:51:14] 2025-12-03 06:50:16,018 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 01:51:14] 2025-12-03 06:50:16,018 | INFO     | ***************************************
[2025-12-03 01:51:14] 2025-12-03 06:50:16,018 | INFO     | 
[2025-12-03 01:51:14] 2025-12-03 06:50:16,067 | INFO     | architecture information:
[2025-12-03 01:51:14] 2025-12-03 06:50:16,071 | INFO     | executing command: cat /etc/os-release
[2025-12-03 01:51:14] 2025-12-03 06:50:16,130 | INFO     | cat /etc/os-release:
[2025-12-03 01:51:14] NAME="CentOS Linux"
[2025-12-03 01:51:14] VERSION="7 (Core)"
[2025-12-03 01:51:14] ID="centos"
[2025-12-03 01:51:14] ID_LIKE="rhel fedora"
[2025-12-03 01:51:14] VERSION_ID="7"
[2025-12-03 01:51:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 01:51:14] ANSI_COLOR="0;31"
[2025-12-03 01:51:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 01:51:14] HOME_URL="https://www.centos.org/"
[2025-12-03 01:51:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 01:51:14] 
[2025-12-03 01:51:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 01:51:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 01:51:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 01:51:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 01:51:14] 
[2025-12-03 01:51:14] 2025-12-03 06:50:16,134 | INFO     | ***************************************
[2025-12-03 01:51:14] 2025-12-03 06:50:16,638 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-03 01:51:14] 2025-12-03 06:50:16,684 | INFO     | sufficient remaining disk space (89621790720 B)
[2025-12-03 01:51:14] 2025-12-03 06:50:16,685 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 01:51:14] 2025-12-03 06:50:16,685 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 01:51:14] 2025-12-03 06:50:16,685 | INFO     | update_server=False
[2025-12-03 01:51:14] 2025-12-03 06:50:16,685 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 01:51:14] 2025-12-03 06:50:16,702 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 01:51:14] 2025-12-03 06:50:16,703 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 01:51:14] 2025-12-03 06:50:16,703 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 01:51:14] 2025-12-03 06:50:16,703 | INFO     | will abort loop
[2025-12-03 01:51:14] 2025-12-03 06:50:16,729 | INFO     | all job control threads have been joined
[2025-12-03 01:51:14] 2025-12-03 06:50:17,017 | INFO     | all data control threads have been joined
[2025-12-03 01:51:14] 2025-12-03 06:50:17,458 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 01:51:14] 2025-12-03 06:50:17,693 | INFO     | [job] retrieve thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:17,708 | INFO     | [job] job monitor thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:17,735 | INFO     | [job] control thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:17,741 | INFO     | all payload control threads have been joined
[2025-12-03 01:51:14] 2025-12-03 06:50:17,984 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:18,023 | INFO     | [data] control thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:18,046 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 01:51:14] 2025-12-03 06:50:18,186 | INFO     | [data] copytool_in thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:18,209 | INFO     | [payload] failed_post thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:18,560 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:18,731 | INFO     | [job] validate thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:18,746 | INFO     | [payload] control thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:18,895 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:18,948 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:19,052 | INFO     | [job] queue monitor thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:19,158 | INFO     | [payload] validate_post thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:19,465 | INFO     | [data] copytool_out thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:19,758 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 01:51:14] 2025-12-03 06:50:23,779 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 01:51:14] 2025-12-03 06:50:48,221 | INFO     | PID=3416925 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 01:51:14] 2025-12-03 06:50:48,221 | INFO     | .. there are 46 such processes running
[2025-12-03 01:51:14] 2025-12-03 06:50:48,221 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 01:51:14] 2025-12-03 06:50:48,221 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 01:51:14] 2025-12-03 06:50:48,222 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 01:51:14] 2025-12-03 06:51:07,608 | INFO     | [monitor] cgroup control has ended
[2025-12-03 01:51:14] 2025-12-03 06:51:08,392 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140469884454720)>', '<ExcThread(monitor, started 140469103220480)>']
[2025-12-03 01:51:14] 2025-12-03 06:51:09,369 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 01:51:14] 2025-12-03 06:51:09,369 | INFO     | [monitor] control thread has ended
[2025-12-03 01:51:14] 2025-12-03 06:51:13,417 | INFO     | all workflow threads have been joined
[2025-12-03 01:51:14] 2025-12-03 06:51:13,429 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 01:51:14] 2025-12-03 06:51:13,430 | INFO     | traces error code: 0
[2025-12-03 01:51:14] 2025-12-03 06:51:13,430 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 01:51:14] 2025-12-03 06:51:13,555 [wrapper] ==== pilot stdout END ====
[2025-12-03 01:51:14] 2025-12-03 06:51:13,583 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 01:51:14] 2025-12-03 06:51:13,617 [wrapper] pilotpid: 3416925
[2025-12-03 01:51:14] 2025-12-03 06:51:13,632 [wrapper] Pilot exit status: 0
[2025-12-03 01:51:14] 2025-12-03 06:51:13,669 [wrapper] pandaids: 6895335028
[2025-12-03 01:51:14] 2025-12-03 06:51:13,836 [wrapper] cleanup supervisor_pilot 2619062 3416926
[2025-12-03 01:51:14] 2025-12-03 06:51:13,845 [wrapper] Test setup, not cleaning
[2025-12-03 01:51:14] 2025-12-03 06:51:13,894 [wrapper] apfmon messages muted
[2025-12-03 01:51:14] 2025-12-03 06:51:13,949 [wrapper] ==== wrapper stdout END ====
[2025-12-03 01:51:14] 2025-12-03 06:51:13,991 [wrapper] ==== wrapper stderr END ====
[2025-12-03 01:51:14]  *** Error codes and diagnostics ***
[2025-12-03 01:51:14]     "exeErrorCode": 0,
[2025-12-03 01:51:14]     "exeErrorDiag": "",
[2025-12-03 01:51:14]     "pilotErrorCode": 0,
[2025-12-03 01:51:14]     "pilotErrorDiag": "",
[2025-12-03 01:51:14]  *** Listing of results directory ***
[2025-12-03 01:51:14] total 1310764
[2025-12-03 01:51:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 22:55 pilot3.tar.gz
[2025-12-03 01:51:14] -rwx------. 1 boincer umatlas     36292 Nov 21 23:03 runpilot2-wrapper.sh
[2025-12-03 01:51:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 23:03 queuedata.json
[2025-12-03 01:51:14] -rw-r--r--. 1 boincer umatlas       100 Dec  2 12:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 01:51:14] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 12:47 run_atlas
[2025-12-03 01:51:14] -rw-r--r--. 1 boincer umatlas       105 Dec  2 12:47 job.xml
[2025-12-03 01:51:14] -rw-r--r--. 2 boincer umatlas 410950249 Dec  2 12:47 EVNT.47483658._000245.pool.root.1
[2025-12-03 01:51:14] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 12:47 start_atlas.sh
[2025-12-03 01:51:14] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 12:47 shared
[2025-12-03 01:51:14] -rw-r--r--. 2 boincer umatlas    590098 Dec  2 12:47 input.tar.gz
[2025-12-03 01:51:14] -rw-r--r--. 1 boincer umatlas         0 Dec  2 12:47 boinc_lockfile
[2025-12-03 01:51:14] -rw-r--r--. 1 boincer umatlas      2785 Dec  2 12:47 pandaJob.out
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas        57 Dec  2 12:47 setup.sh.local
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas    988858 Dec  2 12:48 agis_schedconf.cvmfs.json
[2025-12-03 01:51:14] drwx------. 5 boincer umatlas      4096 Dec  2 12:48 pilot3
[2025-12-03 01:51:14] -rw-r--r--. 1 boincer umatlas       533 Dec  3 01:29 boinc_task_state.xml
[2025-12-03 01:51:14] -rw-r--r--. 1 boincer umatlas      7171 Dec  3 01:46 init_data.xml
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas 912628946 Dec  3 01:49 HITS.47556137._002420.pool.root.1
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas      1051 Dec  3 01:49 memory_monitor_summary.json
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas   1516240 Dec  3 01:49 agis_ddmendpoints.agis.ALL.json
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas   1917012 Dec  3 01:49 log.47556137._002420.job.log.tgz.1
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas      8575 Dec  3 01:50 heartbeat.json
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas        95 Dec  3 01:50 pilot_heartbeat.json
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas      5010 Dec  3 01:51 pilotlog.txt
[2025-12-03 01:51:14] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 01:51 boinc_mmap_file
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas   5442086 Dec  3 01:51 log.47556137._002420.job.log.1
[2025-12-03 01:51:14] -rw-r--r--. 1 boincer umatlas        29 Dec  3 01:51 wrapper_checkpoint.txt
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas       353 Dec  3 01:51 output.list
[2025-12-03 01:51:14] -rw-r--r--. 1 boincer umatlas       620 Dec  3 01:51 runtime_log
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas   7383040 Dec  3 01:51 result.tar.gz
[2025-12-03 01:51:14] -rw-r--r--. 1 boincer umatlas      9333 Dec  3 01:51 runtime_log.err
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas       657 Dec  3 01:51 f9CODmf1tg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWwHKDmfArl1n.diag
[2025-12-03 01:51:14] -rw-r--r--. 1 boincer umatlas     21802 Dec  3 01:51 stderr.txt
[2025-12-03 01:51:14] HITS file was successfully produced:
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas 912628946 Dec  3 01:49 shared/HITS.pool.root.1
[2025-12-03 01:51:14]  *** Contents of shared directory: ***
[2025-12-03 01:51:14] total 1300376
[2025-12-03 01:51:14] -rw-r--r--. 2 boincer umatlas 410950249 Dec  2 12:47 ATLAS.root_0
[2025-12-03 01:51:14] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 12:47 start_atlas.sh
[2025-12-03 01:51:14] -rw-r--r--. 2 boincer umatlas    590098 Dec  2 12:47 input.tar.gz
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas 912628946 Dec  3 01:49 HITS.pool.root.1
[2025-12-03 01:51:14] -rw-------. 1 boincer umatlas   7383040 Dec  3 01:51 result.tar.gz
01:51:16 (3392886): run_atlas exited; CPU time 138114.075561
01:51:16 (3392886): called boinc_finish(0)

</stderr_txt>
]]>

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