Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:21:03 (3475770): wrapper (7.7.26015): starting
14:21:03 (3475770): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 14:21:03] Arguments: --nthreads 8
[2025-12-02 14:21:03] Threads: 8
[2025-12-02 14:21:03] Checking for CVMFS
[2025-12-02 14:21:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 14:21:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 14:21:04] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 14:21:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 14:21:05] 2.13.2.0 1657905 39311 224040 153567 0 260 33947255 40960000 38105 16776704 0 454936629 99.692 361139146 48443 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 14:21:05] CVMFS is ok
[2025-12-02 14:21:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 14:21:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 14:21:05] Further information can be found at the LHC@home message board.
[2025-12-02 14:21:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 14:21:05] Checking for apptainer binary...
[2025-12-02 14:21:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 14:21:05] Running /usr/bin/apptainer --version
[2025-12-02 14:21:05] apptainer version 1.4.4-1.el9
[2025-12-02 14:21:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 14:21:06] c-208-39.aglt2.org
[2025-12-02 14:21:06] apptainer works
[2025-12-02 14:21:06] Set ATHENA_PROC_NUMBER=8
[2025-12-02 14:21:06] Set ATHENA_CORE_NUMBER=8
[2025-12-02 14:21:06] Starting ATLAS job with PandaID=6895337560
[2025-12-02 14:21:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:00:07 (3475770): BOINC client no longer exists - exiting
23:00:07 (3475770): timer handler: client dead, exiting
23:11:05 (3253967): wrapper (7.7.26015): starting
23:11:05 (3253967): wrapper: running run_atlas (--nthreads 11)
[2025-12-02 23:11:05] Arguments: --nthreads 11
[2025-12-02 23:11:05] Threads: 11
[2025-12-02 23:11:05] This job has been restarted, cleaning up previous attempt
[2025-12-02 23:11:05] Checking for CVMFS
[2025-12-02 23:11:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 23:11:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 23:11:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 23:11:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 23:11:05] 2.13.2.0 1657905 39841 245256 153579 3 546 24319821 40960000 23221 16776704 0 459625107 99.692 364147989 48429 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 23:11:05] CVMFS is ok
[2025-12-02 23:11:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 23:11:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 23:11:05] Further information can be found at the LHC@home message board.
[2025-12-02 23:11:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 23:11:05] Checking for apptainer binary...
[2025-12-02 23:11:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 23:11:05] Running /usr/bin/apptainer --version
[2025-12-02 23:11:05] apptainer version 1.4.4-1.el9
[2025-12-02 23:11:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 23:11:05] c-208-39.aglt2.org
[2025-12-02 23:11:05] apptainer works
[2025-12-02 23:11:05] Set ATHENA_PROC_NUMBER=11
[2025-12-02 23:11:05] Set ATHENA_CORE_NUMBER=11
[2025-12-02 23:11:05] Starting ATLAS job with PandaID=6895337560
[2025-12-02 23:11:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 09:15:27]  *** The last 200 lines of the pilot log: ***
[2025-12-03 09:15:27] 2025-12-03 14:14:22,483 | INFO     | sum of deviations: 271279429537.13538
[2025-12-03 09:15:27] 2025-12-03 14:14:22,483 | INFO     | mean x: 1764753161.2445195
[2025-12-03 09:15:27] 2025-12-03 14:14:22,483 | INFO     | mean y: 3303254.9645868465
[2025-12-03 09:15:27] 2025-12-03 14:14:22,483 | INFO     | intersect: -7401141482.8208885
[2025-12-03 09:15:27] 2025-12-03 14:14:22,483 | INFO     | chi2: 10.482259709652554
[2025-12-03 09:15:27] 2025-12-03 14:14:22,504 | INFO     | sum of square deviations: 63034659077.46264
[2025-12-03 09:15:27] 2025-12-03 14:14:22,523 | INFO     | sum of deviations: 519269536296.3617
[2025-12-03 09:15:27] 2025-12-03 14:14:22,523 | INFO     | mean x: 1764753008.7721088
[2025-12-03 09:15:27] 2025-12-03 14:14:22,523 | INFO     | mean y: 3326576.741496599
[2025-12-03 09:15:27] 2025-12-03 14:14:22,523 | INFO     | intersect: -14534429158.822475
[2025-12-03 09:15:27] 2025-12-03 14:14:22,523 | INFO     | chi2: 6.612825930259757
[2025-12-03 09:15:27] 2025-12-03 14:14:22,523 | INFO     | current chi2=6.612825930259757 (change=36.91411858293915 %)
[2025-12-03 09:15:27] 2025-12-03 14:14:22,533 | INFO     | sum of square deviations: 61440741528.469955
[2025-12-03 09:15:27] 2025-12-03 14:14:22,559 | INFO     | sum of deviations: 778884307881.5847
[2025-12-03 09:15:27] 2025-12-03 14:14:22,560 | INFO     | mean x: 1764752856.3001716
[2025-12-03 09:15:27] 2025-12-03 14:14:22,560 | INFO     | mean y: 3351417.150943396
[2025-12-03 09:15:27] 2025-12-03 14:14:22,560 | INFO     | intersect: -22368421332.76754
[2025-12-03 09:15:27] 2025-12-03 14:14:22,560 | INFO     | chi2: 2.5872811791449353
[2025-12-03 09:15:27] 2025-12-03 14:14:22,560 | INFO     | current chi2=2.5872811791449353 (change=60.87480289923033 %)
[2025-12-03 09:15:27] 2025-12-03 14:14:22,560 | INFO     | sum of square deviations: 59873940766.04349
[2025-12-03 09:15:27] 2025-12-03 14:14:22,575 | INFO     | sum of deviations: 882528774523.6282
[2025-12-03 09:15:27] 2025-12-03 14:14:22,575 | INFO     | mean x: 1764752703.8287196
[2025-12-03 09:15:27] 2025-12-03 14:14:22,575 | INFO     | mean y: 3361493.6730103805
[2025-12-03 09:15:27] 2025-12-03 14:14:22,575 | INFO     | intersect: -26008706880.662197
[2025-12-03 09:15:27] 2025-12-03 14:14:22,575 | INFO     | chi2: 1.7880994900496145
[2025-12-03 09:15:27] 2025-12-03 14:14:22,575 | INFO     | current chi2=1.7880994900496145 (change=30.888861076917834 %)
[2025-12-03 09:15:27] 2025-12-03 14:14:22,576 | INFO     | sum of square deviations: 58333954089.08239
[2025-12-03 09:15:27] 2025-12-03 14:14:22,596 | INFO     | sum of deviations: 900296236223.3514
[2025-12-03 09:15:27] 2025-12-03 14:14:22,596 | INFO     | mean x: 1764752551.3542757
[2025-12-03 09:15:27] 2025-12-03 14:14:22,596 | INFO     | mean y: 3363237.6928446773
[2025-12-03 09:15:27] 2025-12-03 14:14:22,596 | INFO     | intersect: -27232919724.08852
[2025-12-03 09:15:27] 2025-12-03 14:14:22,604 | INFO     | chi2: 1.6565205121347448
[2025-12-03 09:15:27] 2025-12-03 14:14:22,604 | INFO     | current chi2=1.6565205121347448 (change=7.358593783348083 %)
[2025-12-03 09:15:27] 2025-12-03 14:14:22,604 | INFO     | right removable region: 572
[2025-12-03 09:15:27] 2025-12-03 14:14:22,604 | INFO     | sum of square deviations: 63033593607.07997
[2025-12-03 09:15:27] 2025-12-03 14:14:22,608 | INFO     | sum of deviations: 133256275789.1939
[2025-12-03 09:15:27] 2025-12-03 14:14:22,608 | INFO     | mean x: 1764753313.7670069
[2025-12-03 09:15:27] 2025-12-03 14:14:22,608 | INFO     | mean y: 3316193.0306122447
[2025-12-03 09:15:27] 2025-12-03 14:14:22,608 | INFO     | intersect: -3727463551.8960085
[2025-12-03 09:15:27] 2025-12-03 14:14:22,609 | INFO     | chi2: 9.041547097111017
[2025-12-03 09:15:27] 2025-12-03 14:14:22,609 | INFO     | current chi2=9.041547097111017 (change=13.744294192738437 %)
[2025-12-03 09:15:27] 2025-12-03 14:14:22,609 | INFO     | left removable region: 10
[2025-12-03 09:15:27] 2025-12-03 14:14:22,609 | INFO     | sum of square deviations: 55037660022.41998
[2025-12-03 09:15:27] 2025-12-03 14:14:22,613 | INFO     | sum of deviations: 713148935943.3064
[2025-12-03 09:15:27] 2025-12-03 14:14:22,613 | INFO     | mean x: 1764752825.9003558
[2025-12-03 09:15:27] 2025-12-03 14:14:22,613 | INFO     | mean y: 3381519.4697508896
[2025-12-03 09:15:27] 2025-12-03 14:14:22,613 | INFO     | intersect: -22863353721.111153
[2025-12-03 09:15:27] 2025-12-03 14:14:22,614 | INFO     | chi2: 0.1185271517067118
[2025-12-03 09:15:27] 2025-12-03 14:14:22,614 | INFO     | current memory leak: 12.96 B/s (using 562 data points, chi2=0.12)
[2025-12-03 09:15:27] 2025-12-03 14:14:22,614 | INFO     | could have reported an average CPU frequency of 3760 MHz (23 samples)
[2025-12-03 09:15:27] 2025-12-03 14:14:22,614 | INFO     | ..............................
[2025-12-03 09:15:27] 2025-12-03 14:14:22,614 | INFO     | . Timing measurements:
[2025-12-03 09:15:27] 2025-12-03 14:14:22,614 | INFO     | . get job = 0 s
[2025-12-03 09:15:27] 2025-12-03 14:14:22,615 | INFO     | . initial setup = 2 s
[2025-12-03 09:15:27] 2025-12-03 14:14:22,615 | INFO     | . payload setup = 5 s
[2025-12-03 09:15:27] 2025-12-03 14:14:22,615 | INFO     | . stage-in = 0 s
[2025-12-03 09:15:27] 2025-12-03 14:14:22,615 | INFO     | . payload execution = 36131 s
[2025-12-03 09:15:27] 2025-12-03 14:14:22,615 | INFO     | . stage-out = 4 s
[2025-12-03 09:15:27] 2025-12-03 14:14:22,615 | INFO     | . log creation = 0 s
[2025-12-03 09:15:27] 2025-12-03 14:14:22,615 | INFO     | ..............................
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | 
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | job summary report
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | --------------------------------------------------
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | PanDA job id: 6895337560
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | task id: 47556149
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | errors: (none)
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | pilot state: finished 
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | transexitcode: 0
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | exeerrorcode: 0
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | exeerrordiag: 
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | exitcode: 0
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | exitmsg: OK
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | cpuconsumptiontime: 138887 s
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | nevents: 1000
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | neventsw: 0
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | pid: 3325626
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | pgrp: 3325626
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | corecount: 11
[2025-12-03 09:15:27] 2025-12-03 14:14:22,667 | INFO     | event service: False
[2025-12-03 09:15:27] 2025-12-03 14:14:22,668 | INFO     | sizes: {0: 2284306, 4: 2284568, 11: 2284596, 36141: 2326401, 36146: 2335423, 36149: 2335479, 36171: 2335853}
[2025-12-03 09:15:27] 2025-12-03 14:14:22,668 | INFO     | --------------------------------------------------
[2025-12-03 09:15:27] 2025-12-03 14:14:22,668 | INFO     | 
[2025-12-03 09:15:27] 2025-12-03 14:14:22,668 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-03 09:15:27] 2025-12-03 14:14:22,843 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,889 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,890 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 09:15:27] 2025-12-03 14:14:22,890 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,890 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 09:15:27] 2025-12-03 14:14:22,890 | INFO     | job 6895337560 has completed (purged errors)
[2025-12-03 09:15:27] 2025-12-03 14:14:22,890 | INFO     | overall cleanup function is called
[2025-12-03 09:15:27] 2025-12-03 14:14:24,103 | INFO     | --- collectZombieJob: --- 10, [3325626]
[2025-12-03 09:15:27] 2025-12-03 14:14:24,103 | INFO     | zombie collector waiting for pid 3325626
[2025-12-03 09:15:27] 2025-12-03 14:14:24,103 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 09:15:27] 2025-12-03 14:14:24,103 | INFO     | collected zombie processes
[2025-12-03 09:15:27] 2025-12-03 14:14:24,103 | INFO     | will attempt to kill all subprocesses of pid=3325626
[2025-12-03 09:15:27] 2025-12-03 14:14:24,815 | INFO     | PID=3274968 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 09:15:27] 2025-12-03 14:14:24,815 | INFO     | .. there are 35 such processes running
[2025-12-03 09:15:27] 2025-12-03 14:14:25,593 | INFO     | process IDs to be killed: [3325626] (in reverse order)
[2025-12-03 09:15:27] 2025-12-03 14:14:25,797 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 09:15:27] 2025-12-03 14:14:25,797 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 09:15:27] 2025-12-03 14:14:25,821 | INFO     | did not find any defunct processes belonging to 3325626
[2025-12-03 09:15:27] 2025-12-03 14:14:25,932 | INFO     | did not find any defunct processes belonging to 3325626
[2025-12-03 09:15:27] 2025-12-03 14:14:25,948 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 09:15:27] 2025-12-03 14:14:25,948 | INFO     | ready for new job
[2025-12-03 09:15:27] 2025-12-03 14:14:25,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 09:15:27] 2025-12-03 14:14:25,957 | INFO     | ***************************************
[2025-12-03 09:15:27] 2025-12-03 14:14:25,959 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 09:15:27] 2025-12-03 14:14:25,959 | INFO     | ***************************************
[2025-12-03 09:15:27] 2025-12-03 14:14:25,960 | INFO     | 
[2025-12-03 09:15:27] 2025-12-03 14:14:25,968 | INFO     | architecture information:
[2025-12-03 09:15:27] 2025-12-03 14:14:25,991 | INFO     | executing command: cat /etc/os-release
[2025-12-03 09:15:27] 2025-12-03 14:14:26,048 | INFO     | cat /etc/os-release:
[2025-12-03 09:15:27] NAME="CentOS Linux"
[2025-12-03 09:15:27] VERSION="7 (Core)"
[2025-12-03 09:15:27] ID="centos"
[2025-12-03 09:15:27] ID_LIKE="rhel fedora"
[2025-12-03 09:15:27] VERSION_ID="7"
[2025-12-03 09:15:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 09:15:27] ANSI_COLOR="0;31"
[2025-12-03 09:15:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 09:15:27] HOME_URL="https://www.centos.org/"
[2025-12-03 09:15:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 09:15:27] 
[2025-12-03 09:15:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 09:15:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 09:15:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 09:15:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 09:15:27] 
[2025-12-03 09:15:27] 2025-12-03 14:14:26,048 | INFO     | ***************************************
[2025-12-03 09:15:27] 2025-12-03 14:14:26,552 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-03 09:15:27] 2025-12-03 14:14:26,586 | INFO     | sufficient remaining disk space (168025915392 B)
[2025-12-03 09:15:27] 2025-12-03 14:14:26,586 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 09:15:27] 2025-12-03 14:14:26,587 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 09:15:27] 2025-12-03 14:14:26,587 | INFO     | update_server=False
[2025-12-03 09:15:27] 2025-12-03 14:14:26,587 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 09:15:27] 2025-12-03 14:14:26,587 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 09:15:27] 2025-12-03 14:14:26,714 | INFO     | all payload control threads have been joined
[2025-12-03 09:15:27] 2025-12-03 14:14:26,767 | INFO     | all data control threads have been joined
[2025-12-03 09:15:27] 2025-12-03 14:14:26,968 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 09:15:27] 2025-12-03 14:14:26,968 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 09:15:27] 2025-12-03 14:14:26,968 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:15:27] 2025-12-03 14:14:26,968 | INFO     | will abort loop
[2025-12-03 09:15:27] 2025-12-03 14:14:27,194 | INFO     | all job control threads have been joined
[2025-12-03 09:15:27] 2025-12-03 14:14:27,593 | INFO     | [job] retrieve thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:27,720 | INFO     | [payload] control thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:27,728 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:27,734 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:15:27] 2025-12-03 14:14:27,740 | INFO     | [payload] validate_post thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:27,773 | INFO     | [data] control thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:27,974 | INFO     | [job] job monitor thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:28,204 | INFO     | [job] control thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:28,220 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:28,236 | INFO     | [payload] failed_post thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:28,418 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:28,594 | INFO     | [data] copytool_out thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:28,710 | INFO     | [data] copytool_in thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:28,740 | INFO     | [job] queue monitor thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:28,853 | INFO     | [job] validate thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:29,035 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:30,048 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 09:15:27] 2025-12-03 14:14:34,056 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 09:15:27] 2025-12-03 14:14:57,440 | INFO     | PID=3274968 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 09:15:27] 2025-12-03 14:14:57,440 | INFO     | .. there are 35 such processes running
[2025-12-03 09:15:27] 2025-12-03 14:14:57,440 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 09:15:27] 2025-12-03 14:14:57,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 09:15:27] 2025-12-03 14:14:57,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 09:15:27] 2025-12-03 14:15:19,316 | INFO     | [monitor] cgroup control has ended
[2025-12-03 09:15:27] 2025-12-03 14:15:21,128 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139761519232832)>', '<ExcThread(monitor, started 139760500725504)>']
[2025-12-03 09:15:27] 2025-12-03 14:15:21,587 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 09:15:27] 2025-12-03 14:15:21,587 | INFO     | [monitor] control thread has ended
[2025-12-03 09:15:27] 2025-12-03 14:15:26,157 | INFO     | all workflow threads have been joined
[2025-12-03 09:15:27] 2025-12-03 14:15:26,157 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 09:15:27] 2025-12-03 14:15:26,157 | INFO     | traces error code: 0
[2025-12-03 09:15:27] 2025-12-03 14:15:26,157 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 09:15:27] 2025-12-03 14:15:26,323 [wrapper] ==== pilot stdout END ====
[2025-12-03 09:15:27] 2025-12-03 14:15:26,328 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 09:15:27] 2025-12-03 14:15:26,339 [wrapper] pilotpid: 3274968
[2025-12-03 09:15:27] 2025-12-03 14:15:26,353 [wrapper] Pilot exit status: 0
[2025-12-03 09:15:27] 2025-12-03 14:15:26,465 [wrapper] pandaids: 6895337560 6895337560
[2025-12-03 09:15:27] 2025-12-03 14:15:26,603 [wrapper] cleanup supervisor_pilot 1162423 3274971
[2025-12-03 09:15:27] 2025-12-03 14:15:26,606 [wrapper] Test setup, not cleaning
[2025-12-03 09:15:27] 2025-12-03 14:15:26,609 [wrapper] apfmon messages muted
[2025-12-03 09:15:27] 2025-12-03 14:15:26,611 [wrapper] ==== wrapper stdout END ====
[2025-12-03 09:15:27] 2025-12-03 14:15:26,613 [wrapper] ==== wrapper stderr END ====
[2025-12-03 09:15:27]  *** Error codes and diagnostics ***
[2025-12-03 09:15:27]     "exeErrorCode": 0,
[2025-12-03 09:15:27]     "exeErrorDiag": "",
[2025-12-03 09:15:27]     "pilotErrorCode": 0,
[2025-12-03 09:15:27]     "pilotErrorDiag": "",
[2025-12-03 09:15:27]  *** Listing of results directory ***
[2025-12-03 09:15:27] total 1714628
[2025-12-03 09:15:27] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-03 09:15:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 02:52 pilot3.tar.gz
[2025-12-03 09:15:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 03:14 queuedata.json
[2025-12-03 09:15:27] -rwx------. 1 boincer umatlas     36292 Nov 22 03:18 runpilot2-wrapper.sh
[2025-12-03 09:15:27] -rw-r--r--. 1 boincer umatlas       100 Dec  2 14:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 09:15:27] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 14:21 run_atlas
[2025-12-03 09:15:27] -rw-r--r--. 1 boincer umatlas       105 Dec  2 14:21 job.xml
[2025-12-03 09:15:27] -rw-r--r--. 3 boincer umatlas 410792078 Dec  2 14:21 EVNT.47483658._001076.pool.root.1
[2025-12-03 09:15:27] -rw-r--r--. 3 boincer umatlas 410792078 Dec  2 14:21 ATLAS.root_0
[2025-12-03 09:15:27] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 14:21 start_atlas.sh
[2025-12-03 09:15:27] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 14:21 shared
[2025-12-03 09:15:27] -rw-r--r--. 2 boincer umatlas    590100 Dec  2 14:21 input.tar.gz
[2025-12-03 09:15:27] -rw-r--r--. 1 boincer umatlas         0 Dec  2 14:21 boinc_lockfile
[2025-12-03 09:15:27] -rw-r--r--. 1 boincer umatlas      2781 Dec  2 23:11 pandaJob.out
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas        57 Dec  2 23:11 setup.sh.local
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas    989300 Dec  2 23:11 agis_schedconf.cvmfs.json
[2025-12-03 09:15:27] -rw-r--r--. 1 boincer umatlas       532 Dec  3 08:55 boinc_task_state.xml
[2025-12-03 09:15:27] -rw-r--r--. 1 boincer umatlas      7175 Dec  3 09:10 init_data.xml
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas 916801773 Dec  3 09:13 HITS.47556149._000621.pool.root.1
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas      1087 Dec  3 09:13 memory_monitor_summary.json
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas   1516240 Dec  3 09:13 agis_ddmendpoints.agis.ALL.json
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas   2143175 Dec  3 09:13 log.47556149._000621.job.log.tgz.1
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas        96 Dec  3 09:14 pilot_heartbeat.json
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas      8637 Dec  3 09:14 heartbeat.json
[2025-12-03 09:15:27] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 09:15 boinc_mmap_file
[2025-12-03 09:15:27] -rw-r--r--. 1 boincer umatlas        29 Dec  3 09:15 wrapper_checkpoint.txt
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas      5011 Dec  3 09:15 pilotlog.txt
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas   4598230 Dec  3 09:15 log.47556149._000621.job.log.1
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas       353 Dec  3 09:15 output.list
[2025-12-03 09:15:27] -rw-r--r--. 1 boincer umatlas       620 Dec  3 09:15 runtime_log
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas   6758400 Dec  3 09:15 result.tar.gz
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas       791 Dec  3 09:15 Z5TNDmY0xg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQ3JKDm04HMkm.diag
[2025-12-03 09:15:27] -rw-r--r--. 1 boincer umatlas      9430 Dec  3 09:15 runtime_log.err
[2025-12-03 09:15:27] -rw-r--r--. 1 boincer umatlas      4425 Dec  3 09:15 stderr.txt
[2025-12-03 09:15:27] HITS file was successfully produced:
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas 916801773 Dec  3 09:13 shared/HITS.pool.root.1
[2025-12-03 09:15:27]  *** Contents of shared directory: ***
[2025-12-03 09:15:27] total 1303688
[2025-12-03 09:15:27] -rw-r--r--. 3 boincer umatlas 410792078 Dec  2 14:21 ATLAS.root_0
[2025-12-03 09:15:27] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 14:21 start_atlas.sh
[2025-12-03 09:15:27] -rw-r--r--. 2 boincer umatlas    590100 Dec  2 14:21 input.tar.gz
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas 916801773 Dec  3 09:13 HITS.pool.root.1
[2025-12-03 09:15:27] -rw-------. 1 boincer umatlas   6758400 Dec  3 09:15 result.tar.gz
09:15:28 (3253967): run_atlas exited; CPU time 139186.856942
09:15:28 (3253967): called boinc_finish(0)

</stderr_txt>
]]>

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