Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:54:10 (1364640): wrapper (7.7.26015): starting
12:54:10 (1364640): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 12:54:10] Arguments: --nthreads 8
[2025-12-02 12:54:10] Threads: 8
[2025-12-02 12:54:10] Checking for CVMFS
[2025-12-02 12:54:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 12:54:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 12:54:11] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 12:54:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 12:54:12] 2.13.3.0 11235 37320 239904 153564 1 717 16585702 32935936 40773 16776704 0 312579072 99.591 309954235 32822 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 12:54:12] CVMFS is ok
[2025-12-02 12:54:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 12:54:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 12:54:12] Further information can be found at the LHC@home message board.
[2025-12-02 12:54:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 12:54:12] Checking for apptainer binary...
[2025-12-02 12:54:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 12:54:12] Running /usr/bin/apptainer --version
[2025-12-02 12:54:12] apptainer version 1.4.4-1.el9
[2025-12-02 12:54:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 12:54:12] c7-2-37.aglt2.org
[2025-12-02 12:54:12] apptainer works
[2025-12-02 12:54:13] Set ATHENA_PROC_NUMBER=8
[2025-12-02 12:54:13] Set ATHENA_CORE_NUMBER=8
[2025-12-02 12:54:13] Starting ATLAS job with PandaID=6895352745
[2025-12-02 12:54:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 00:27:28]  *** The last 200 lines of the pilot log: ***
[2025-12-03 00:27:28] 2025-12-03 05:26:19,133 | INFO     | time since job start (41472s) is within the limit (172800.0s)
[2025-12-03 00:27:28] 2025-12-03 05:26:21,140 | INFO     | time since job start (41474s) is within the limit (172800.0s)
[2025-12-03 00:27:28] 2025-12-03 05:26:21,373 | INFO     | monitor loop #2370: job 0:6895352745 is in state 'finished'
[2025-12-03 00:27:28] 2025-12-03 05:26:21,373 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:27:28] 2025-12-03 05:26:23,175 | INFO     | time since job start (41476s) is within the limit (172800.0s)
[2025-12-03 00:27:28] 2025-12-03 05:26:23,888 | INFO     | monitor loop #2371: job 0:6895352745 is in state 'finished'
[2025-12-03 00:27:28] 2025-12-03 05:26:23,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:27:28] 2025-12-03 05:26:26,182 | INFO     | PID=1402897 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 00:27:28] 2025-12-03 05:26:26,182 | INFO     | .. there are 77 such processes running
[2025-12-03 00:27:28] 2025-12-03 05:26:26,408 | INFO     | monitor loop #2372: job 0:6895352745 is in state 'finished'
[2025-12-03 00:27:28] 2025-12-03 05:26:26,408 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:27:28] 2025-12-03 05:26:27,183 | INFO     | time since job start (41480s) is within the limit (172800.0s)
[2025-12-03 00:27:28] 2025-12-03 05:26:28,920 | INFO     | monitor loop #2373: job 0:6895352745 is in state 'finished'
[2025-12-03 00:27:28] 2025-12-03 05:26:28,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 00:27:28] 2025-12-03 05:26:29,189 | INFO     | time since job start (41482s) is within the limit (172800.0s)
[2025-12-03 00:27:28] 2025-12-03 05:26:29,518 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 00:27:28] 2025-12-03 05:26:29,575 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3375.2562083333337
[2025-12-03 00:27:28] 2025-12-03 05:26:29,627 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895352745/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 00:27:28] 2025-12-03 05:26:29,628 | INFO     | extracted standard info from prmon json
[2025-12-03 00:27:28] 2025-12-03 05:26:29,628 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 00:27:28] 2025-12-03 05:26:29,628 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 00:27:28] 2025-12-03 05:26:29,678 | INFO     | fitting pss+swap vs Time
[2025-12-03 00:27:28] 2025-12-03 05:26:29,692 | INFO     | sum of square deviations: 97075171406.69809
[2025-12-03 00:27:28] 2025-12-03 05:26:29,708 | INFO     | sum of deviations: 276139126065.9005
[2025-12-03 00:27:28] 2025-12-03 05:26:29,709 | INFO     | mean x: 1764718867.9116347
[2025-12-03 00:27:28] 2025-12-03 05:26:29,709 | INFO     | mean y: 2827947.5316642122
[2025-12-03 00:27:28] 2025-12-03 05:26:29,709 | INFO     | intersect: -5017074864.64612
[2025-12-03 00:27:28] 2025-12-03 05:26:29,710 | INFO     | chi2: 23.428556898862983
[2025-12-03 00:27:28] 2025-12-03 05:26:29,710 | INFO     | sum of square deviations: 94946904110.79112
[2025-12-03 00:27:28] 2025-12-03 05:26:29,750 | INFO     | sum of deviations: 502055010748.08307
[2025-12-03 00:27:28] 2025-12-03 05:26:29,750 | INFO     | mean x: 1764718715.425816
[2025-12-03 00:27:28] 2025-12-03 05:26:29,750 | INFO     | mean y: 2844132.1216617213
[2025-12-03 00:27:28] 2025-12-03 05:26:29,750 | INFO     | intersect: -9328538306.705591
[2025-12-03 00:27:28] 2025-12-03 05:26:29,751 | INFO     | chi2: 19.846177636773273
[2025-12-03 00:27:28] 2025-12-03 05:26:29,751 | INFO     | current chi2=19.846177636773273 (change=15.290652674657768 %)
[2025-12-03 00:27:28] 2025-12-03 05:26:29,751 | INFO     | right removable region: 673
[2025-12-03 00:27:28] 2025-12-03 05:26:29,751 | INFO     | sum of square deviations: 94946112330.79112
[2025-12-03 00:27:28] 2025-12-03 05:26:29,805 | INFO     | sum of deviations: 15324544175.291641
[2025-12-03 00:27:28] 2025-12-03 05:26:29,806 | INFO     | mean x: 1764719020.425816
[2025-12-03 00:27:28] 2025-12-03 05:26:29,807 | INFO     | mean y: 2846624.9258160237
[2025-12-03 00:27:28] 2025-12-03 05:26:29,807 | INFO     | intersect: -281983516.31549704
[2025-12-03 00:27:28] 2025-12-03 05:26:29,807 | INFO     | chi2: 19.578987421614226
[2025-12-03 00:27:28] 2025-12-03 05:26:29,807 | INFO     | current chi2=19.578987421614226 (change=16.431099422242184 %)
[2025-12-03 00:27:28] 2025-12-03 05:26:29,808 | INFO     | left removable region: 10
[2025-12-03 00:27:28] 2025-12-03 05:26:29,808 | INFO     | sum of square deviations: 90373155026.8175
[2025-12-03 00:27:28] 2025-12-03 05:26:29,857 | INFO     | sum of deviations: 74202569664.28387
[2025-12-03 00:27:28] 2025-12-03 05:26:29,857 | INFO     | mean x: 1764718989.9577677
[2025-12-03 00:27:28] 2025-12-03 05:26:29,857 | INFO     | mean y: 2882585.7601809953
[2025-12-03 00:27:28] 2025-12-03 05:26:29,857 | INFO     | intersect: -1446072955.8646362
[2025-12-03 00:27:28] 2025-12-03 05:26:29,858 | INFO     | chi2: 12.541753505864309
[2025-12-03 00:27:28] 2025-12-03 05:26:29,858 | INFO     | current memory leak: 0.82 B/s (using 663 data points, chi2=12.54)
[2025-12-03 00:27:28] 2025-12-03 05:26:29,859 | INFO     | could have reported an average CPU frequency of 3335 MHz (26 samples)
[2025-12-03 00:27:28] 2025-12-03 05:26:29,859 | INFO     | ..............................
[2025-12-03 00:27:28] 2025-12-03 05:26:29,859 | INFO     | . Timing measurements:
[2025-12-03 00:27:28] 2025-12-03 05:26:29,859 | INFO     | . get job = 0 s
[2025-12-03 00:27:28] 2025-12-03 05:26:29,859 | INFO     | . initial setup = 3 s
[2025-12-03 00:27:28] 2025-12-03 05:26:29,859 | INFO     | . payload setup = 21 s
[2025-12-03 00:27:28] 2025-12-03 05:26:29,859 | INFO     | . stage-in = 0 s
[2025-12-03 00:27:28] 2025-12-03 05:26:29,859 | INFO     | . payload execution = 41385 s
[2025-12-03 00:27:28] 2025-12-03 05:26:29,859 | INFO     | . stage-out = 4 s
[2025-12-03 00:27:28] 2025-12-03 05:26:29,859 | INFO     | . log creation = 1 s
[2025-12-03 00:27:28] 2025-12-03 05:26:29,859 | INFO     | ..............................
[2025-12-03 00:27:28] 2025-12-03 05:26:30,105 | INFO     | 
[2025-12-03 00:27:28] 2025-12-03 05:26:30,105 | INFO     | job summary report
[2025-12-03 00:27:28] 2025-12-03 05:26:30,105 | INFO     | --------------------------------------------------
[2025-12-03 00:27:28] 2025-12-03 05:26:30,105 | INFO     | PanDA job id: 6895352745
[2025-12-03 00:27:28] 2025-12-03 05:26:30,105 | INFO     | task id: 47556149
[2025-12-03 00:27:28] 2025-12-03 05:26:30,105 | INFO     | errors: (none)
[2025-12-03 00:27:28] 2025-12-03 05:26:30,105 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | pilot state: finished 
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | transexitcode: 0
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | exeerrorcode: 0
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | exeerrordiag: 
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | exitcode: 0
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | exitmsg: OK
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | cpuconsumptiontime: 186183 s
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | nevents: 1000
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | neventsw: 0
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | pid: 1425352
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | pgrp: 1425352
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | corecount: 8
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | event service: False
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | sizes: {0: 2284092, 1: 2284291, 12: 2284291, 17: 2284581, 23: 2284609, 41412: 2328284, 41417: 2337278, 41419: 2337334, 41441: 2337580}
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | --------------------------------------------------
[2025-12-03 00:27:28] 2025-12-03 05:26:30,106 | INFO     | 
[2025-12-03 00:27:28] 2025-12-03 05:26:30,107 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-03 00:27:28] 2025-12-03 05:26:30,200 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,200 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,200 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 00:27:28] 2025-12-03 05:26:30,201 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,202 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 00:27:28] 2025-12-03 05:26:30,202 | INFO     | job 6895352745 has completed (purged errors)
[2025-12-03 00:27:28] 2025-12-03 05:26:30,202 | INFO     | overall cleanup function is called
[2025-12-03 00:27:28] 2025-12-03 05:26:31,255 | INFO     | --- collectZombieJob: --- 10, [1425352]
[2025-12-03 00:27:28] 2025-12-03 05:26:31,255 | INFO     | zombie collector waiting for pid 1425352
[2025-12-03 00:27:28] 2025-12-03 05:26:31,255 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 00:27:28] 2025-12-03 05:26:31,255 | INFO     | collected zombie processes
[2025-12-03 00:27:28] 2025-12-03 05:26:31,255 | INFO     | will attempt to kill all subprocesses of pid=1425352
[2025-12-03 00:27:28] 2025-12-03 05:26:32,292 | INFO     | process IDs to be killed: [1425352] (in reverse order)
[2025-12-03 00:27:28] 2025-12-03 05:26:32,639 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 00:27:28] 2025-12-03 05:26:32,653 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 00:27:28] 2025-12-03 05:26:32,732 | INFO     | did not find any defunct processes belonging to 1425352
[2025-12-03 00:27:28] 2025-12-03 05:26:32,785 | INFO     | did not find any defunct processes belonging to 1425352
[2025-12-03 00:27:28] 2025-12-03 05:26:32,793 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 00:27:28] 2025-12-03 05:26:32,794 | INFO     | ready for new job
[2025-12-03 00:27:28] 2025-12-03 05:26:32,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 00:27:28] 2025-12-03 05:26:32,807 | INFO     | ***************************************
[2025-12-03 00:27:28] 2025-12-03 05:26:32,807 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 00:27:28] 2025-12-03 05:26:32,807 | INFO     | ***************************************
[2025-12-03 00:27:28] 2025-12-03 05:26:32,807 | INFO     | 
[2025-12-03 00:27:28] 2025-12-03 05:26:32,811 | INFO     | architecture information:
[2025-12-03 00:27:28] 2025-12-03 05:26:32,814 | INFO     | executing command: cat /etc/os-release
[2025-12-03 00:27:28] 2025-12-03 05:26:32,883 | INFO     | cat /etc/os-release:
[2025-12-03 00:27:28] NAME="CentOS Linux"
[2025-12-03 00:27:28] VERSION="7 (Core)"
[2025-12-03 00:27:28] ID="centos"
[2025-12-03 00:27:28] ID_LIKE="rhel fedora"
[2025-12-03 00:27:28] VERSION_ID="7"
[2025-12-03 00:27:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 00:27:28] ANSI_COLOR="0;31"
[2025-12-03 00:27:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 00:27:28] HOME_URL="https://www.centos.org/"
[2025-12-03 00:27:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 00:27:28] 
[2025-12-03 00:27:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 00:27:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 00:27:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 00:27:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 00:27:28] 
[2025-12-03 00:27:28] 2025-12-03 05:26:32,883 | INFO     | ***************************************
[2025-12-03 00:27:28] 2025-12-03 05:26:33,387 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-03 00:27:28] 2025-12-03 05:26:33,484 | INFO     | sufficient remaining disk space (70508347392 B)
[2025-12-03 00:27:28] 2025-12-03 05:26:33,485 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 00:27:28] 2025-12-03 05:26:33,485 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 00:27:28] 2025-12-03 05:26:33,485 | INFO     | update_server=False
[2025-12-03 00:27:28] 2025-12-03 05:26:33,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 00:27:28] 2025-12-03 05:26:33,785 | INFO     | all job control threads have been joined
[2025-12-03 00:27:28] 2025-12-03 05:26:33,960 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 00:27:28] 2025-12-03 05:26:33,960 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 00:27:28] 2025-12-03 05:26:33,960 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 00:27:28] 2025-12-03 05:26:33,960 | INFO     | will abort loop
[2025-12-03 00:27:28] 2025-12-03 05:26:34,472 | INFO     | all payload control threads have been joined
[2025-12-03 00:27:28] 2025-12-03 05:26:34,489 | INFO     | all data control threads have been joined
[2025-12-03 00:27:28] 2025-12-03 05:26:34,493 | INFO     | [job] retrieve thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:34,509 | INFO     | [data] copytool_in thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:34,696 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 00:27:28] 2025-12-03 05:26:34,791 | INFO     | [job] control thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:34,966 | INFO     | [job] job monitor thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:35,036 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 00:27:28] 2025-12-03 05:26:35,151 | INFO     | [payload] failed_post thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:35,163 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:35,224 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:35,280 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:35,281 | INFO     | [job] validate thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:35,478 | INFO     | [payload] control thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:35,495 | INFO     | [data] control thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:35,658 | INFO     | [payload] validate_post thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:35,666 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:36,042 | INFO     | [job] queue monitor thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:36,703 | INFO     | [data] copytool_out thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:26:36,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 00:27:28] 2025-12-03 05:26:40,851 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 00:27:28] 2025-12-03 05:27:03,857 | INFO     | PID=1402897 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 00:27:28] 2025-12-03 05:27:03,858 | INFO     | .. there are 76 such processes running
[2025-12-03 00:27:28] 2025-12-03 05:27:03,858 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 00:27:28] 2025-12-03 05:27:03,858 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 00:27:28] 2025-12-03 05:27:03,861 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 00:27:28] 2025-12-03 05:27:21,093 | INFO     | [monitor] cgroup control has ended
[2025-12-03 00:27:28] 2025-12-03 05:27:21,580 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139963006805824)>', '<ExcThread(monitor, started 139962733270784)>']
[2025-12-03 00:27:28] 2025-12-03 05:27:22,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 00:27:28] 2025-12-03 05:27:22,004 | INFO     | [monitor] control thread has ended
[2025-12-03 00:27:28] 2025-12-03 05:27:26,606 | INFO     | all workflow threads have been joined
[2025-12-03 00:27:28] 2025-12-03 05:27:26,606 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 00:27:28] 2025-12-03 05:27:26,606 | INFO     | traces error code: 0
[2025-12-03 00:27:28] 2025-12-03 05:27:26,606 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 00:27:28] 2025-12-03 05:27:26,834 [wrapper] ==== pilot stdout END ====
[2025-12-03 00:27:28] 2025-12-03 05:27:26,838 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 00:27:28] 2025-12-03 05:27:26,875 [wrapper] pilotpid: 1402897
[2025-12-03 00:27:28] 2025-12-03 05:27:26,901 [wrapper] Pilot exit status: 0
[2025-12-03 00:27:28] 2025-12-03 05:27:27,082 [wrapper] pandaids: 6895352745
[2025-12-03 00:27:28] 2025-12-03 05:27:27,403 [wrapper] cleanup supervisor_pilot  441459 1402899
[2025-12-03 00:27:28] 2025-12-03 05:27:27,412 [wrapper] Test setup, not cleaning
[2025-12-03 00:27:28] 2025-12-03 05:27:27,433 [wrapper] apfmon messages muted
[2025-12-03 00:27:28] 2025-12-03 05:27:27,478 [wrapper] ==== wrapper stdout END ====
[2025-12-03 00:27:28] 2025-12-03 05:27:27,496 [wrapper] ==== wrapper stderr END ====
[2025-12-03 00:27:28]  *** Error codes and diagnostics ***
[2025-12-03 00:27:28]     "exeErrorCode": 0,
[2025-12-03 00:27:28]     "exeErrorDiag": "",
[2025-12-03 00:27:28]     "pilotErrorCode": 0,
[2025-12-03 00:27:28]     "pilotErrorDiag": "",
[2025-12-03 00:27:28]  *** Listing of results directory ***
[2025-12-03 00:27:28] total 1318896
[2025-12-03 00:27:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 22:01 pilot3.tar.gz
[2025-12-03 00:27:28] -rwx------. 1 boincer umatlas     36292 Nov 22 22:39 runpilot2-wrapper.sh
[2025-12-03 00:27:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 22:39 queuedata.json
[2025-12-03 00:27:28] -rw-r--r--. 1 boincer umatlas       100 Dec  2 12:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 00:27:28] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 12:54 run_atlas
[2025-12-03 00:27:28] -rw-r--r--. 1 boincer umatlas       105 Dec  2 12:54 job.xml
[2025-12-03 00:27:28] -rw-r--r--. 2 boincer umatlas 408543354 Dec  2 12:54 EVNT.47483658._001135.pool.root.1
[2025-12-03 00:27:28] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 12:54 start_atlas.sh
[2025-12-03 00:27:28] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 12:54 shared
[2025-12-03 00:27:28] -rw-r--r--. 2 boincer umatlas    590102 Dec  2 12:54 input.tar.gz
[2025-12-03 00:27:28] -rw-r--r--. 1 boincer umatlas         0 Dec  2 12:54 boinc_lockfile
[2025-12-03 00:27:28] -rw-r--r--. 1 boincer umatlas      2784 Dec  2 12:54 pandaJob.out
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas        57 Dec  2 12:54 setup.sh.local
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas    988858 Dec  2 12:55 agis_schedconf.cvmfs.json
[2025-12-03 00:27:28] drwx------. 5 boincer umatlas      4096 Dec  2 12:55 pilot3
[2025-12-03 00:27:28] -rw-r--r--. 1 boincer umatlas       533 Dec  2 23:57 boinc_task_state.xml
[2025-12-03 00:27:28] -rw-r--r--. 1 boincer umatlas      6946 Dec  3 00:21 init_data.xml
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas 924131244 Dec  3 00:25 HITS.47556149._001217.pool.root.1
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas      1054 Dec  3 00:25 memory_monitor_summary.json
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas   1516240 Dec  3 00:26 agis_ddmendpoints.agis.ALL.json
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas   1891460 Dec  3 00:26 log.47556149._001217.job.log.tgz.1
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas      8586 Dec  3 00:26 heartbeat.json
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas        95 Dec  3 00:27 pilot_heartbeat.json
[2025-12-03 00:27:28] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 00:27 boinc_mmap_file
[2025-12-03 00:27:28] -rw-r--r--. 1 boincer umatlas        29 Dec  3 00:27 wrapper_checkpoint.txt
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas      5010 Dec  3 00:27 pilotlog.txt
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas   5087596 Dec  3 00:27 log.47556149._001217.job.log.1
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas       353 Dec  3 00:27 output.list
[2025-12-03 00:27:28] -rw-r--r--. 1 boincer umatlas       620 Dec  3 00:27 runtime_log
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas   6993920 Dec  3 00:27 result.tar.gz
[2025-12-03 00:27:28] -rw-r--r--. 1 boincer umatlas      9338 Dec  3 00:27 runtime_log.err
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas       660 Dec  3 00:27 JruLDmi7Fh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7PIKDmzPJjym.diag
[2025-12-03 00:27:28] -rw-r--r--. 1 boincer umatlas     21841 Dec  3 00:27 stderr.txt
[2025-12-03 00:27:28] HITS file was successfully produced:
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas 924131244 Dec  3 00:25 shared/HITS.pool.root.1
[2025-12-03 00:27:28]  *** Contents of shared directory: ***
[2025-12-03 00:27:28] total 1308880
[2025-12-03 00:27:28] -rw-r--r--. 2 boincer umatlas 408543354 Dec  2 12:54 ATLAS.root_0
[2025-12-03 00:27:28] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 12:54 start_atlas.sh
[2025-12-03 00:27:28] -rw-r--r--. 2 boincer umatlas    590102 Dec  2 12:54 input.tar.gz
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas 924131244 Dec  3 00:25 HITS.pool.root.1
[2025-12-03 00:27:28] -rw-------. 1 boincer umatlas   6993920 Dec  3 00:27 result.tar.gz
00:27:30 (1364640): run_atlas exited; CPU time 186763.215094
00:27:30 (1364640): called boinc_finish(0)

</stderr_txt>
]]>

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