Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:09:49 (2881671): wrapper (7.7.26015): starting
13:09:49 (2881671): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 13:09:49] Arguments: --nthreads 8
[2025-12-02 13:09:49] Threads: 8
[2025-12-02 13:09:49] Checking for CVMFS
[2025-12-02 13:09:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 13:09:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 13:09:49] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 13:09:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 13:09:50] 2.13.2.0 1657905 39240 264224 153564 3 909 27811148 40960001 35971 16776704 0 453938395 99.693 359288092 48524 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 13:09:50] CVMFS is ok
[2025-12-02 13:09:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 13:09:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 13:09:50] Further information can be found at the LHC@home message board.
[2025-12-02 13:09:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 13:09:50] Checking for apptainer binary...
[2025-12-02 13:09:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 13:09:50] Running /usr/bin/apptainer --version
[2025-12-02 13:09:51] apptainer version 1.4.4-1.el9
[2025-12-02 13:09:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 13:09:51] c-208-39.aglt2.org
[2025-12-02 13:09:51] apptainer works
[2025-12-02 13:09:51] Set ATHENA_PROC_NUMBER=8
[2025-12-02 13:09:51] Set ATHENA_CORE_NUMBER=8
[2025-12-02 13:09:51] Starting ATLAS job with PandaID=6904974471
[2025-12-02 13:09:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 20:38:03]  *** The last 200 lines of the pilot log: ***
[2025-12-02 20:38:03] 2025-12-03 01:37:13,332 | INFO     | time since job start (26764s) is within the limit (172800.0s)
[2025-12-02 20:38:03] 2025-12-03 01:37:15,340 | INFO     | time since job start (26766s) is within the limit (172800.0s)
[2025-12-02 20:38:03] 2025-12-03 01:37:15,523 | INFO     | monitor loop #1642: job 0:6904974471 is in state 'finished'
[2025-12-02 20:38:03] 2025-12-03 01:37:15,523 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:38:03] 2025-12-03 01:37:17,346 | INFO     | time since job start (26768s) is within the limit (172800.0s)
[2025-12-02 20:38:03] 2025-12-03 01:37:18,040 | INFO     | monitor loop #1643: job 0:6904974471 is in state 'finished'
[2025-12-02 20:38:03] 2025-12-03 01:37:18,040 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:38:03] 2025-12-03 01:37:19,352 | INFO     | time since job start (26770s) is within the limit (172800.0s)
[2025-12-02 20:38:03] 2025-12-03 01:37:20,548 | INFO     | monitor loop #1644: job 0:6904974471 is in state 'finished'
[2025-12-02 20:38:03] 2025-12-03 01:37:20,548 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:38:03] 2025-12-03 01:37:21,359 | INFO     | time since job start (26772s) is within the limit (172800.0s)
[2025-12-02 20:38:03] 2025-12-03 01:37:23,054 | INFO     | monitor loop #1645: job 0:6904974471 is in state 'finished'
[2025-12-02 20:38:03] 2025-12-03 01:37:23,054 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:38:03] 2025-12-03 01:37:23,366 | INFO     | time since job start (26774s) is within the limit (172800.0s)
[2025-12-02 20:38:03] 2025-12-03 01:37:25,266 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 20:38:03] 2025-12-03 01:37:25,283 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3787.490960937499
[2025-12-02 20:38:03] 2025-12-03 01:37:25,332 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6904974471/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 20:38:03] 2025-12-03 01:37:25,333 | INFO     | extracted standard info from prmon json
[2025-12-02 20:38:03] 2025-12-03 01:37:25,333 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 20:38:03] 2025-12-03 01:37:25,333 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 20:38:03] 2025-12-03 01:37:25,343 | INFO     | fitting pss+swap vs Time
[2025-12-02 20:38:03] 2025-12-03 01:37:25,344 | INFO     | sum of square deviations: 25524081193.98614
[2025-12-02 20:38:03] 2025-12-03 01:37:25,350 | INFO     | sum of deviations: -136857065352.21428
[2025-12-02 20:38:03] 2025-12-03 01:37:25,350 | INFO     | mean x: 1764712538.848276
[2025-12-02 20:38:03] 2025-12-03 01:37:25,350 | INFO     | mean y: 3275030.314942529
[2025-12-02 20:38:03] 2025-12-03 01:37:25,350 | INFO     | intersect: 9465452235.500086
[2025-12-02 20:38:03] 2025-12-03 01:37:25,351 | INFO     | chi2: 18.98234102002866
[2025-12-02 20:38:03] 2025-12-03 01:37:25,351 | INFO     | sum of square deviations: 24654272874.20701
[2025-12-02 20:38:03] 2025-12-03 01:37:25,357 | INFO     | sum of deviations: 36828024749.90695
[2025-12-02 20:38:03] 2025-12-03 01:37:25,358 | INFO     | mean x: 1764712386.3697674
[2025-12-02 20:38:03] 2025-12-03 01:37:25,358 | INFO     | mean y: 3305470.069767442
[2025-12-02 20:38:03] 2025-12-03 01:37:25,358 | INFO     | intersect: -2632784094.3353457
[2025-12-02 20:38:03] 2025-12-03 01:37:25,358 | INFO     | chi2: 15.118369103428934
[2025-12-02 20:38:03] 2025-12-03 01:37:25,358 | INFO     | current chi2=15.118369103428934 (change=20.355613211893985 %)
[2025-12-02 20:38:03] 2025-12-03 01:37:25,358 | INFO     | right removable region: 429
[2025-12-02 20:38:03] 2025-12-03 01:37:25,358 | INFO     | sum of square deviations: 24653782434.20701
[2025-12-02 20:38:03] 2025-12-03 01:37:25,363 | INFO     | sum of deviations: -335091721050.25806
[2025-12-02 20:38:03] 2025-12-03 01:37:25,363 | INFO     | mean x: 1764712691.3697674
[2025-12-02 20:38:03] 2025-12-03 01:37:25,363 | INFO     | mean y: 3309757.7186046513
[2025-12-02 20:38:03] 2025-12-03 01:37:25,363 | INFO     | intersect: 23989106439.766304
[2025-12-02 20:38:03] 2025-12-03 01:37:25,363 | INFO     | chi2: 14.99460586883503
[2025-12-02 20:38:03] 2025-12-03 01:37:25,363 | INFO     | current chi2=14.99460586883503 (change=21.00760463098881 %)
[2025-12-02 20:38:03] 2025-12-03 01:37:25,363 | INFO     | left removable region: 10
[2025-12-02 20:38:03] 2025-12-03 01:37:25,364 | INFO     | sum of square deviations: 22809813428.076195
[2025-12-02 20:38:03] 2025-12-03 01:37:25,366 | INFO     | sum of deviations: -188617956964.1933
[2025-12-02 20:38:03] 2025-12-03 01:37:25,366 | INFO     | mean x: 1764712660.9164677
[2025-12-02 20:38:03] 2025-12-03 01:37:25,366 | INFO     | mean y: 3361154.6801909306
[2025-12-02 20:38:03] 2025-12-03 01:37:25,366 | INFO     | intersect: 14596049419.337461
[2025-12-02 20:38:03] 2025-12-03 01:37:25,366 | INFO     | chi2: 9.18317601932571
[2025-12-02 20:38:03] 2025-12-03 01:37:25,386 | INFO     | time since job start (26776s) is within the limit (172800.0s)
[2025-12-02 20:38:03] 2025-12-03 01:37:25,386 | INFO     | current memory leak: -8.27 B/s (using 419 data points, chi2=9.18)
[2025-12-02 20:38:03] 2025-12-03 01:37:25,387 | INFO     | could have reported an average CPU frequency of 3783 MHz (18 samples)
[2025-12-02 20:38:03] 2025-12-03 01:37:25,387 | INFO     | ..............................
[2025-12-02 20:38:03] 2025-12-03 01:37:25,387 | INFO     | . Timing measurements:
[2025-12-02 20:38:03] 2025-12-03 01:37:25,387 | INFO     | . get job = 0 s
[2025-12-02 20:38:03] 2025-12-03 01:37:25,387 | INFO     | . initial setup = 7 s
[2025-12-02 20:38:03] 2025-12-03 01:37:25,387 | INFO     | . payload setup = 116 s
[2025-12-02 20:38:03] 2025-12-03 01:37:25,387 | INFO     | . stage-in = 0 s
[2025-12-02 20:38:03] 2025-12-03 01:37:25,387 | INFO     | . payload execution = 26530 s
[2025-12-02 20:38:03] 2025-12-03 01:37:25,387 | INFO     | . stage-out = 6 s
[2025-12-02 20:38:03] 2025-12-03 01:37:25,387 | INFO     | . log creation = 1 s
[2025-12-02 20:38:03] 2025-12-03 01:37:25,387 | INFO     | ..............................
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | 
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | job summary report
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | --------------------------------------------------
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | PanDA job id: 6904974471
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | task id: 47538113
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | errors: (none)
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | pilot state: finished 
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | transexitcode: 0
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | exeerrorcode: 0
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | exeerrordiag: 
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | exitcode: 0
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | exitmsg: OK
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | cpuconsumptiontime: 117999 s
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | nevents: 1000
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | neventsw: 0
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | pid: 2918035
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | pgrp: 2918035
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | corecount: 8
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | event service: False
[2025-12-02 20:38:03] 2025-12-03 01:37:25,495 | INFO     | sizes: {0: 2284173, 1: 2284428, 2: 2284428, 12: 2284456, 23: 2284484, 34: 2284512, 36: 2284930, 44: 2284958, 26652: 2341641, 26658: 2350635, 26662: 2350691, 26693:
[2025-12-02 20:38:03] 2025-12-03 01:37:25,496 | INFO     | --------------------------------------------------
[2025-12-02 20:38:03] 2025-12-03 01:37:25,496 | INFO     | 
[2025-12-02 20:38:03] 2025-12-03 01:37:25,496 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-02 20:38:03] 2025-12-03 01:37:25,642 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,642 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,642 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,642 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,642 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,642 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,642 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,642 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | job 6904974471 has completed (purged errors)
[2025-12-02 20:38:03] 2025-12-03 01:37:25,643 | INFO     | overall cleanup function is called
[2025-12-02 20:38:03] 2025-12-03 01:37:27,163 | INFO     | --- collectZombieJob: --- 10, [2918035]
[2025-12-02 20:38:03] 2025-12-03 01:37:27,163 | INFO     | zombie collector waiting for pid 2918035
[2025-12-02 20:38:03] 2025-12-03 01:37:27,163 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 20:38:03] 2025-12-03 01:37:27,163 | INFO     | collected zombie processes
[2025-12-02 20:38:03] 2025-12-03 01:37:27,163 | INFO     | will attempt to kill all subprocesses of pid=2918035
[2025-12-02 20:38:03] 2025-12-03 01:37:28,892 | INFO     | process IDs to be killed: [2918035] (in reverse order)
[2025-12-02 20:38:03] 2025-12-03 01:37:29,366 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 20:38:03] 2025-12-03 01:37:29,367 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 20:38:03] 2025-12-03 01:37:29,417 | INFO     | did not find any defunct processes belonging to 2918035
[2025-12-02 20:38:03] 2025-12-03 01:37:29,445 | INFO     | did not find any defunct processes belonging to 2918035
[2025-12-02 20:38:03] 2025-12-03 01:37:29,468 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 20:38:03] 2025-12-03 01:37:29,468 | INFO     | ready for new job
[2025-12-02 20:38:03] 2025-12-03 01:37:29,468 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 20:38:03] 2025-12-03 01:37:29,472 | INFO     | ***************************************
[2025-12-02 20:38:03] 2025-12-03 01:37:29,472 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 20:38:03] 2025-12-03 01:37:29,472 | INFO     | ***************************************
[2025-12-02 20:38:03] 2025-12-03 01:37:29,472 | INFO     | 
[2025-12-02 20:38:03] 2025-12-03 01:37:29,481 | INFO     | architecture information:
[2025-12-02 20:38:03] 2025-12-03 01:37:29,489 | INFO     | executing command: cat /etc/os-release
[2025-12-02 20:38:03] 2025-12-03 01:37:29,572 | INFO     | cat /etc/os-release:
[2025-12-02 20:38:03] NAME="CentOS Linux"
[2025-12-02 20:38:03] VERSION="7 (Core)"
[2025-12-02 20:38:03] ID="centos"
[2025-12-02 20:38:03] ID_LIKE="rhel fedora"
[2025-12-02 20:38:03] VERSION_ID="7"
[2025-12-02 20:38:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 20:38:03] ANSI_COLOR="0;31"
[2025-12-02 20:38:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 20:38:03] HOME_URL="https://www.centos.org/"
[2025-12-02 20:38:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 20:38:03] 
[2025-12-02 20:38:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 20:38:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 20:38:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 20:38:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 20:38:03] 
[2025-12-02 20:38:03] 2025-12-03 01:37:29,572 | INFO     | ***************************************
[2025-12-02 20:38:03] 2025-12-03 01:37:30,076 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-02 20:38:03] 2025-12-03 01:37:30,117 | INFO     | sufficient remaining disk space (161333903360 B)
[2025-12-02 20:38:03] 2025-12-03 01:37:30,117 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 20:38:03] 2025-12-03 01:37:30,117 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 20:38:03] 2025-12-03 01:37:30,118 | INFO     | update_server=False
[2025-12-02 20:38:03] 2025-12-03 01:37:30,118 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 20:38:03] 2025-12-03 01:37:30,119 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 20:38:03] 2025-12-03 01:37:30,363 | INFO     | all payload control threads have been joined
[2025-12-02 20:38:03] 2025-12-03 01:37:30,514 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:38:03] 2025-12-03 01:37:30,607 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 20:38:03] 2025-12-03 01:37:30,607 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 20:38:03] 2025-12-03 01:37:30,607 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:38:03] 2025-12-03 01:37:30,607 | INFO     | will abort loop
[2025-12-02 20:38:03] 2025-12-03 01:37:30,789 | INFO     | all job control threads have been joined
[2025-12-02 20:38:03] 2025-12-03 01:37:31,033 | INFO     | all data control threads have been joined
[2025-12-02 20:38:03] 2025-12-03 01:37:31,124 | INFO     | [job] retrieve thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:31,312 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:31,369 | INFO     | [payload] control thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:31,519 | INFO     | [job] queue monitor thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:31,616 | INFO     | [job] job monitor thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:31,795 | INFO     | [job] control thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:32,040 | INFO     | [data] control thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:32,087 | INFO     | [payload] failed_post thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:32,150 | INFO     | [data] copytool_out thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:32,209 | INFO     | [data] copytool_in thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:32,209 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:32,213 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 20:38:03] 2025-12-03 01:37:32,248 | INFO     | [job] validate thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:32,248 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:32,310 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:32,701 | INFO     | [payload] validate_post thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:36,227 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 20:38:03] 2025-12-03 01:37:55,164 | INFO     | [monitor] cgroup control has ended
[2025-12-02 20:38:03] 2025-12-03 01:37:56,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140165160384320)>', '<ExcThread(monitor, started 140164798060288)>']
[2025-12-02 20:38:03] 2025-12-03 01:38:00,259 | INFO     | PID=2890152 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 20:38:03] 2025-12-03 01:38:00,259 | INFO     | .. there are 53 such processes running
[2025-12-02 20:38:03] 2025-12-03 01:38:00,260 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 20:38:03] 2025-12-03 01:38:00,260 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 20:38:03] 2025-12-03 01:38:00,260 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 20:38:03] 2025-12-03 01:38:00,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 20:38:03] 2025-12-03 01:38:00,260 | INFO     | [monitor] control thread has ended
[2025-12-02 20:38:03] 2025-12-03 01:38:01,565 | INFO     | all workflow threads have been joined
[2025-12-02 20:38:03] 2025-12-03 01:38:01,565 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 20:38:03] 2025-12-03 01:38:01,565 | INFO     | traces error code: 0
[2025-12-02 20:38:03] 2025-12-03 01:38:01,565 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 20:38:03] 2025-12-03 01:38:02,057 [wrapper] ==== pilot stdout END ====
[2025-12-02 20:38:03] 2025-12-03 01:38:02,070 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 20:38:03] 2025-12-03 01:38:02,081 [wrapper] pilotpid: 2890152
[2025-12-02 20:38:03] 2025-12-03 01:38:02,097 [wrapper] Pilot exit status: 0
[2025-12-02 20:38:03] 2025-12-03 01:38:02,197 [wrapper] pandaids: 6904974471
[2025-12-02 20:38:03] 2025-12-03 01:38:02,355 [wrapper] cleanup supervisor_pilot 1756106 2890153
[2025-12-02 20:38:03] 2025-12-03 01:38:02,370 [wrapper] Test setup, not cleaning
[2025-12-02 20:38:03] 2025-12-03 01:38:02,432 [wrapper] apfmon messages muted
[2025-12-02 20:38:03] 2025-12-03 01:38:02,442 [wrapper] ==== wrapper stdout END ====
[2025-12-02 20:38:03] 2025-12-03 01:38:02,505 [wrapper] ==== wrapper stderr END ====
[2025-12-02 20:38:03]  *** Error codes and diagnostics ***
[2025-12-02 20:38:03]     "exeErrorCode": 0,
[2025-12-02 20:38:03]     "exeErrorDiag": "",
[2025-12-02 20:38:03]     "pilotErrorCode": 0,
[2025-12-02 20:38:03]     "pilotErrorDiag": "",
[2025-12-02 20:38:03]  *** Listing of results directory ***
[2025-12-02 20:38:03] total 1077676
[2025-12-02 20:38:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 19:16 pilot3.tar.gz
[2025-12-02 20:38:03] -rwx------. 1 boincer umatlas     36292 Nov 29 19:18 runpilot2-wrapper.sh
[2025-12-02 20:38:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 19:23 queuedata.json
[2025-12-02 20:38:03] -rw-r--r--. 1 boincer umatlas       100 Dec  2 13:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 20:38:03] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 13:09 run_atlas
[2025-12-02 20:38:03] -rw-r--r--. 1 boincer umatlas       105 Dec  2 13:09 job.xml
[2025-12-02 20:38:03] -rw-r--r--. 2 boincer umatlas 378689561 Dec  2 13:09 EVNT.47528871._000024.pool.root.1
[2025-12-02 20:38:03] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 13:09 start_atlas.sh
[2025-12-02 20:38:03] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 13:09 shared
[2025-12-02 20:38:03] -rw-r--r--. 2 boincer umatlas    590140 Dec  2 13:09 input.tar.gz
[2025-12-02 20:38:03] -rw-r--r--. 1 boincer umatlas         0 Dec  2 13:09 boinc_lockfile
[2025-12-02 20:38:03] -rw-r--r--. 1 boincer umatlas      2879 Dec  2 13:09 pandaJob.out
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas        57 Dec  2 13:09 setup.sh.local
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas    988858 Dec  2 13:11 agis_schedconf.cvmfs.json
[2025-12-02 20:38:03] drwx------. 5 boincer umatlas      4096 Dec  2 13:11 pilot3
[2025-12-02 20:38:03] -rw-r--r--. 1 boincer umatlas       533 Dec  2 20:16 boinc_task_state.xml
[2025-12-02 20:38:03] -rw-r--r--. 1 boincer umatlas      7175 Dec  2 20:30 init_data.xml
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas 710505799 Dec  2 20:36 HITS.47538113._001923.pool.root.1
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas      1072 Dec  2 20:36 memory_monitor_summary.json
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas   1516240 Dec  2 20:36 agis_ddmendpoints.agis.ALL.json
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas   1813550 Dec  2 20:36 log.47538113._001923.job.log.tgz.1
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas     28334 Dec  2 20:37 heartbeat.json
[2025-12-02 20:38:03] -rw-r--r--. 1 boincer umatlas        29 Dec  2 20:37 wrapper_checkpoint.txt
[2025-12-02 20:38:03] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 20:37 boinc_mmap_file
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas        95 Dec  2 20:38 pilot_heartbeat.json
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas      5011 Dec  2 20:38 pilotlog.txt
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas   3379517 Dec  2 20:38 log.47538113._001923.job.log.1
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas       353 Dec  2 20:38 output.list
[2025-12-02 20:38:03] -rw-r--r--. 1 boincer umatlas       620 Dec  2 20:38 runtime_log
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas   5232640 Dec  2 20:38 result.tar.gz
[2025-12-02 20:38:03] -rw-r--r--. 1 boincer umatlas      9343 Dec  2 20:38 runtime_log.err
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas       666 Dec  2 20:38 m3UNDmLKkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmS4LKDmGQ9fHn.diag
[2025-12-02 20:38:03] -rw-r--r--. 1 boincer umatlas     21792 Dec  2 20:38 stderr.txt
[2025-12-02 20:38:03] HITS file was successfully produced:
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas 710505799 Dec  2 20:36 shared/HITS.pool.root.1
[2025-12-02 20:38:03]  *** Contents of shared directory: ***
[2025-12-02 20:38:03] total 1069388
[2025-12-02 20:38:03] -rw-r--r--. 2 boincer umatlas 378689561 Dec  2 13:09 ATLAS.root_0
[2025-12-02 20:38:03] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 13:09 start_atlas.sh
[2025-12-02 20:38:03] -rw-r--r--. 2 boincer umatlas    590140 Dec  2 13:09 input.tar.gz
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas 710505799 Dec  2 20:36 HITS.pool.root.1
[2025-12-02 20:38:03] -rw-------. 1 boincer umatlas   5232640 Dec  2 20:38 result.tar.gz
20:38:04 (2881671): run_atlas exited; CPU time 118407.409240
20:38:04 (2881671): called boinc_finish(0)

</stderr_txt>
]]>

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