Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:08:20 (9028): wrapper (7.7.26015): starting
06:08:20 (9028): wrapper: running run_atlas (--nthreads 8)
[2025-12-04 06:08:20] Arguments: --nthreads 8
[2025-12-04 06:08:20] Threads: 8
[2025-12-04 06:08:20] Checking for CVMFS
[2025-12-04 06:08:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-04 06:08:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-04 06:08:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-04 06:08:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-04 06:08:24] 2.11.2.0 9859 296306 137700 153624 0 72 20658586 25165825 1758 130560 12 152186193 99.886 88402127 3148 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-04 06:08:24] CVMFS is ok
[2025-12-04 06:08:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-04 06:08:24] Checking for apptainer binary...
[2025-12-04 06:08:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-04 06:08:24] Running /usr/bin/apptainer --version
[2025-12-04 06:08:24] apptainer version 1.3.2-1.el7
[2025-12-04 06:08:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-04 06:08:28] cg-vwn461.simple-grid.lan
[2025-12-04 06:08:28] apptainer works
[2025-12-04 06:08:28] Set ATHENA_PROC_NUMBER=8
[2025-12-04 06:08:28] Set ATHENA_CORE_NUMBER=8
[2025-12-04 06:08:28] Starting ATLAS job with PandaID=6897995506
[2025-12-04 06:08:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 00:00:17]  *** The last 200 lines of the pilot log: ***
[2025-12-05 00:00:17] 2025-12-04 22:59:14,178 | INFO     | PID=12829 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-05 00:00:17] 2025-12-04 22:59:14,178 | INFO     | .. there are 9 such processes running
[2025-12-05 00:00:17] 2025-12-04 22:59:15,179 | INFO     | time since job start (64019s) is within the limit (172800.0s)
[2025-12-05 00:00:17] 2025-12-04 22:59:16,446 | INFO     | monitor loop #4418: job 0:6897995506 is in state 'finished'
[2025-12-05 00:00:17] 2025-12-04 22:59:16,446 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 00:00:17] 2025-12-04 22:59:17,186 | INFO     | time since job start (64021s) is within the limit (172800.0s)
[2025-12-05 00:00:17] 2025-12-04 22:59:18,951 | INFO     | monitor loop #4419: job 0:6897995506 is in state 'finished'
[2025-12-05 00:00:17] 2025-12-04 22:59:18,951 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 00:00:17] 2025-12-04 22:59:19,194 | INFO     | time since job start (64023s) is within the limit (172800.0s)
[2025-12-05 00:00:17] 2025-12-04 22:59:21,201 | INFO     | time since job start (64025s) is within the limit (172800.0s)
[2025-12-05 00:00:17] 2025-12-04 22:59:21,456 | INFO     | monitor loop #4420: job 0:6897995506 is in state 'finished'
[2025-12-05 00:00:17] 2025-12-04 22:59:21,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 00:00:17] 2025-12-04 22:59:23,209 | INFO     | time since job start (64027s) is within the limit (172800.0s)
[2025-12-05 00:00:17] 2025-12-04 22:59:23,960 | INFO     | monitor loop #4421: job 0:6897995506 is in state 'finished'
[2025-12-05 00:00:17] 2025-12-04 22:59:23,960 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 00:00:17] 2025-12-04 22:59:25,216 | INFO     | time since job start (64029s) is within the limit (172800.0s)
[2025-12-05 00:00:17] 2025-12-04 22:59:25,680 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-05 00:00:17] 2025-12-04 22:59:25,681 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-12-05 00:00:17] 2025-12-04 22:59:25,683 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6897995506/memory_monitor_summary.json (trf name=prmon)
[2025-12-05 00:00:17] 2025-12-04 22:59:25,684 | INFO     | extracted standard info from prmon json
[2025-12-05 00:00:17] 2025-12-04 22:59:25,684 | INFO     | extracted standard memory fields from prmon json
[2025-12-05 00:00:17] 2025-12-04 22:59:25,684 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-05 00:00:17] 2025-12-04 22:59:25,706 | INFO     | fitting pss+swap vs Time
[2025-12-05 00:00:17] 2025-12-04 22:59:25,715 | INFO     | sum of square deviations: 347795314737.99567
[2025-12-05 00:00:17] 2025-12-04 22:59:25,762 | INFO     | sum of deviations: 1643485790464.1108
[2025-12-05 00:00:17] 2025-12-04 22:59:25,763 | INFO     | mean x: 1764857381.998075
[2025-12-05 00:00:17] 2025-12-04 22:59:25,763 | INFO     | mean y: 3334735.5553416745
[2025-12-05 00:00:17] 2025-12-04 22:59:25,763 | INFO     | intersect: -8336392416.015323
[2025-12-05 00:00:17] 2025-12-04 22:59:25,764 | INFO     | chi2: 20.511404753009764
[2025-12-05 00:00:17] 2025-12-04 22:59:25,766 | INFO     | sum of square deviations: 342798635000.4915
[2025-12-05 00:00:17] 2025-12-04 22:59:25,821 | INFO     | sum of deviations: 2090024757340.169
[2025-12-05 00:00:17] 2025-12-04 22:59:25,822 | INFO     | mean x: 1764857229.5029013
[2025-12-05 00:00:17] 2025-12-04 22:59:25,822 | INFO     | mean y: 3348364.4439071566
[2025-12-05 00:00:17] 2025-12-04 22:59:25,822 | INFO     | intersect: -10756890814.532274
[2025-12-05 00:00:17] 2025-12-04 22:59:25,823 | INFO     | chi2: 16.64599089812305
[2025-12-05 00:00:17] 2025-12-04 22:59:25,823 | INFO     | current chi2=16.64599089812305 (change=18.84519320559709 %)
[2025-12-05 00:00:17] 2025-12-04 22:59:25,823 | INFO     | right removable region: 1033
[2025-12-05 00:00:17] 2025-12-04 22:59:25,825 | INFO     | sum of square deviations: 342798002430.49133
[2025-12-05 00:00:17] 2025-12-04 22:59:25,853 | INFO     | sum of deviations: 1118289396079.667
[2025-12-05 00:00:17] 2025-12-04 22:59:25,853 | INFO     | mean x: 1764857534.5029013
[2025-12-05 00:00:17] 2025-12-04 22:59:25,853 | INFO     | mean y: 3350762.9448742745
[2025-12-05 00:00:17] 2025-12-04 22:59:25,853 | INFO     | intersect: -5754038289.595151
[2025-12-05 00:00:17] 2025-12-04 22:59:25,854 | INFO     | chi2: 15.558356299549533
[2025-12-05 00:00:17] 2025-12-04 22:59:25,854 | INFO     | current chi2=15.558356299549533 (change=24.14777784897175 %)
[2025-12-05 00:00:17] 2025-12-04 22:59:25,855 | INFO     | left removable region: 10
[2025-12-05 00:00:17] 2025-12-04 22:59:25,856 | INFO     | sum of square deviations: 331973637605.80994
[2025-12-05 00:00:17] 2025-12-04 22:59:25,890 | INFO     | sum of deviations: 1225091063109.9453
[2025-12-05 00:00:17] 2025-12-04 22:59:25,890 | INFO     | mean x: 1764857504.0136852
[2025-12-05 00:00:17] 2025-12-04 22:59:25,890 | INFO     | mean y: 3381003.0039100684
[2025-12-05 00:00:17] 2025-12-04 22:59:25,890 | INFO     | intersect: -6509519152.028914
[2025-12-05 00:00:17] 2025-12-04 22:59:25,892 | INFO     | chi2: 7.461307281262976
[2025-12-05 00:00:17] 2025-12-04 22:59:25,892 | INFO     | current memory leak: 3.69 B/s (using 1023 data points, chi2=7.46)
[2025-12-05 00:00:17] 2025-12-04 22:59:25,893 | INFO     | could have reported an average CPU frequency of 2250 MHz (36 samples)
[2025-12-05 00:00:17] 2025-12-04 22:59:25,893 | INFO     | ..............................
[2025-12-05 00:00:17] 2025-12-04 22:59:25,893 | INFO     | . Timing measurements:
[2025-12-05 00:00:17] 2025-12-04 22:59:25,893 | INFO     | . get job = 0 s
[2025-12-05 00:00:17] 2025-12-04 22:59:25,893 | INFO     | . initial setup = 6 s
[2025-12-05 00:00:17] 2025-12-04 22:59:25,893 | INFO     | . payload setup = 243 s
[2025-12-05 00:00:17] 2025-12-04 22:59:25,893 | INFO     | . stage-in = 0 s
[2025-12-05 00:00:17] 2025-12-04 22:59:25,893 | INFO     | . payload execution = 63502 s
[2025-12-05 00:00:17] 2025-12-04 22:59:25,893 | INFO     | . stage-out = 3 s
[2025-12-05 00:00:17] 2025-12-04 22:59:25,893 | INFO     | . log creation = 1 s
[2025-12-05 00:00:17] 2025-12-04 22:59:25,893 | INFO     | ..............................
[2025-12-05 00:00:17] 2025-12-04 22:59:26,133 | INFO     | 
[2025-12-05 00:00:17] 2025-12-04 22:59:26,133 | INFO     | job summary report
[2025-12-05 00:00:17] 2025-12-04 22:59:26,133 | INFO     | --------------------------------------------------
[2025-12-05 00:00:17] 2025-12-04 22:59:26,133 | INFO     | PanDA job id: 6897995506
[2025-12-05 00:00:17] 2025-12-04 22:59:26,133 | INFO     | task id: 47531111
[2025-12-05 00:00:17] 2025-12-04 22:59:26,133 | INFO     | errors: (none)
[2025-12-05 00:00:17] 2025-12-04 22:59:26,133 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-05 00:00:17] 2025-12-04 22:59:26,134 | INFO     | pilot state: finished 
[2025-12-05 00:00:17] 2025-12-04 22:59:26,134 | INFO     | transexitcode: 0
[2025-12-05 00:00:17] 2025-12-04 22:59:26,134 | INFO     | exeerrorcode: 0
[2025-12-05 00:00:17] 2025-12-04 22:59:26,134 | INFO     | exeerrordiag: 
[2025-12-05 00:00:17] 2025-12-04 22:59:26,134 | INFO     | exitcode: 0
[2025-12-05 00:00:17] 2025-12-04 22:59:26,134 | INFO     | exitmsg: OK
[2025-12-05 00:00:17] 2025-12-04 22:59:26,134 | INFO     | cpuconsumptiontime: 235039 s
[2025-12-05 00:00:17] 2025-12-04 22:59:26,134 | INFO     | nevents: 1000
[2025-12-05 00:00:17] 2025-12-04 22:59:26,134 | INFO     | neventsw: 0
[2025-12-05 00:00:17] 2025-12-04 22:59:26,135 | INFO     | pid: 20066
[2025-12-05 00:00:17] 2025-12-04 22:59:26,135 | INFO     | pgrp: 20066
[2025-12-05 00:00:17] 2025-12-04 22:59:26,135 | INFO     | corecount: 8
[2025-12-05 00:00:17] 2025-12-04 22:59:26,135 | INFO     | event service: False
[2025-12-05 00:00:17] 2025-12-04 22:59:26,135 | INFO     | sizes: {0: 2284280, 1: 2284479, 12: 2284479, 23: 2284507, 33: 2284535, 44: 2284591, 55: 2284747, 65: 2284775, 76: 2284803, 87: 2284859, 96: 2285149, 98: 2285457, 6
[2025-12-05 00:00:17] 2025-12-04 22:59:26,135 | INFO     | --------------------------------------------------
[2025-12-05 00:00:17] 2025-12-04 22:59:26,135 | INFO     | 
[2025-12-05 00:00:17] 2025-12-04 22:59:26,135 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-12-05 00:00:17] 2025-12-04 22:59:26,559 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,560 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,560 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,560 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,561 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,561 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,561 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-05 00:00:17] 2025-12-04 22:59:26,561 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,561 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-05 00:00:17] 2025-12-04 22:59:26,562 | INFO     | job 6897995506 has completed (purged errors)
[2025-12-05 00:00:17] 2025-12-04 22:59:26,562 | INFO     | overall cleanup function is called
[2025-12-05 00:00:17] 2025-12-04 22:59:27,585 | INFO     | --- collectZombieJob: --- 10, [20066]
[2025-12-05 00:00:17] 2025-12-04 22:59:27,585 | INFO     | zombie collector waiting for pid 20066
[2025-12-05 00:00:17] 2025-12-04 22:59:27,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-05 00:00:17] 2025-12-04 22:59:27,585 | INFO     | collected zombie processes
[2025-12-05 00:00:17] 2025-12-04 22:59:27,585 | INFO     | will attempt to kill all subprocesses of pid=20066
[2025-12-05 00:00:17] 2025-12-04 22:59:27,719 | INFO     | process IDs to be killed: [20066] (in reverse order)
[2025-12-05 00:00:17] 2025-12-04 22:59:28,574 | WARNING  | found no corresponding commands to process id(s)
[2025-12-05 00:00:17] 2025-12-04 22:59:28,575 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-05 00:00:17] 2025-12-04 22:59:28,578 | INFO     | did not find any defunct processes belonging to 20066
[2025-12-05 00:00:17] 2025-12-04 22:59:28,580 | INFO     | did not find any defunct processes belonging to 20066
[2025-12-05 00:00:17] 2025-12-04 22:59:28,610 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-05 00:00:17] 2025-12-04 22:59:28,610 | INFO     | ready for new job
[2025-12-05 00:00:17] 2025-12-04 22:59:28,611 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-05 00:00:17] 2025-12-04 22:59:28,615 | INFO     | ***************************************
[2025-12-05 00:00:17] 2025-12-04 22:59:28,615 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-05 00:00:17] 2025-12-04 22:59:28,615 | INFO     | ***************************************
[2025-12-05 00:00:17] 2025-12-04 22:59:28,615 | INFO     | 
[2025-12-05 00:00:17] 2025-12-04 22:59:28,616 | INFO     | pilot is running in a VM
[2025-12-05 00:00:17] 2025-12-04 22:59:28,616 | INFO     | architecture information:
[2025-12-05 00:00:17] 2025-12-04 22:59:28,630 | INFO     | executing command: cat /etc/os-release
[2025-12-05 00:00:17] 2025-12-04 22:59:28,871 | INFO     | cat /etc/os-release:
[2025-12-05 00:00:17] NAME="CentOS Linux"
[2025-12-05 00:00:17] VERSION="7 (Core)"
[2025-12-05 00:00:17] ID="centos"
[2025-12-05 00:00:17] ID_LIKE="rhel fedora"
[2025-12-05 00:00:17] VERSION_ID="7"
[2025-12-05 00:00:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 00:00:17] ANSI_COLOR="0;31"
[2025-12-05 00:00:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 00:00:17] HOME_URL="https://www.centos.org/"
[2025-12-05 00:00:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 00:00:17] 
[2025-12-05 00:00:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 00:00:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 00:00:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 00:00:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 00:00:17] 
[2025-12-05 00:00:17] 2025-12-04 22:59:28,872 | INFO     | ***************************************
[2025-12-05 00:00:17] 2025-12-04 22:59:29,375 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-12-05 00:00:17] 2025-12-04 22:59:29,572 | INFO     | sufficient remaining disk space (496726179840 B)
[2025-12-05 00:00:17] 2025-12-04 22:59:29,572 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 00:00:17] 2025-12-04 22:59:29,572 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 00:00:17] 2025-12-04 22:59:29,573 | INFO     | update_server=False
[2025-12-05 00:00:17] 2025-12-04 22:59:29,573 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 00:00:17] 2025-12-04 22:59:29,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 00:00:17] 2025-12-04 22:59:29,814 | INFO     | all job control threads have been joined
[2025-12-05 00:00:17] 2025-12-04 22:59:29,997 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 00:00:17] 2025-12-04 22:59:29,997 | INFO     | aborting loop
[2025-12-05 00:00:17] 2025-12-04 22:59:30,476 | INFO     | all payload control threads have been joined
[2025-12-05 00:00:17] 2025-12-04 22:59:30,579 | INFO     | [job] retrieve thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:30,607 | INFO     | all data control threads have been joined
[2025-12-05 00:00:17] 2025-12-04 22:59:30,628 | INFO     | [data] copytool_in thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:30,820 | INFO     | [job] control thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:30,830 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:31,002 | INFO     | [job] job monitor thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:31,029 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:31,032 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 00:00:17] 2025-12-04 22:59:31,235 | INFO     | [payload] failed_post thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:31,283 | INFO     | [payload] validate_post thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:31,371 | INFO     | [job] validate thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:31,482 | INFO     | [payload] control thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:31,580 | INFO     | [data] copytool_out thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:31,613 | INFO     | [data] control thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:31,699 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:31,770 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 00:00:17] 2025-12-04 22:59:31,828 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:32,038 | INFO     | [job] queue monitor thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:35,779 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 00:00:17] 2025-12-04 22:59:58,378 | INFO     | PID=12829 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-05 00:00:17] 2025-12-04 22:59:58,378 | INFO     | .. there are 9 such processes running
[2025-12-05 00:00:17] 2025-12-04 22:59:58,378 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 00:00:17] 2025-12-04 22:59:58,378 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 00:00:17] 2025-12-04 22:59:58,378 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 00:00:17] 2025-12-04 23:00:07,433 | INFO     | [monitor] cgroup control has ended
[2025-12-05 00:00:17] 2025-12-04 23:00:07,667 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140308605073216)>', '<ExcThread(monitor, started 140308159379200)>']
[2025-12-05 00:00:17] 2025-12-04 23:00:08,438 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 00:00:17] 2025-12-04 23:00:08,438 | INFO     | [monitor] control thread has ended
[2025-12-05 00:00:17] 2025-12-04 23:00:12,693 | INFO     | all workflow threads have been joined
[2025-12-05 00:00:17] 2025-12-04 23:00:12,693 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 00:00:17] 2025-12-04 23:00:12,693 | INFO     | traces error code: 0
[2025-12-05 00:00:17] 2025-12-04 23:00:12,693 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 00:00:17] 2025-12-04 23:00:13,011 [wrapper] ==== pilot stdout END ====
[2025-12-05 00:00:17] 2025-12-04 23:00:13,093 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 00:00:17] 2025-12-04 23:00:13,189 [wrapper] pilotpid: 12829
[2025-12-05 00:00:17] 2025-12-04 23:00:13,275 [wrapper] Pilot exit status: 0
[2025-12-05 00:00:17] 2025-12-04 23:00:13,658 [wrapper] pandaids: 6897995506
[2025-12-05 00:00:17] 2025-12-04 23:00:14,520 [wrapper] cleanup supervisor_pilot 19603 12830
[2025-12-05 00:00:17] 2025-12-04 23:00:14,588 [wrapper] Test setup, not cleaning
[2025-12-05 00:00:17] 2025-12-04 23:00:14,700 [wrapper] apfmon messages muted
[2025-12-05 00:00:17] 2025-12-04 23:00:14,808 [wrapper] ==== wrapper stdout END ====
[2025-12-05 00:00:17] 2025-12-04 23:00:14,860 [wrapper] ==== wrapper stderr END ====
[2025-12-05 00:00:17]  *** Error codes and diagnostics ***
[2025-12-05 00:00:17]     "exeErrorCode": 0,
[2025-12-05 00:00:17]     "exeErrorDiag": "",
[2025-12-05 00:00:17]     "pilotErrorCode": 0,
[2025-12-05 00:00:17]     "pilotErrorDiag": "",
[2025-12-05 00:00:17]  *** Listing of results directory ***
[2025-12-05 00:00:17] total 1076448
[2025-12-05 00:00:17] -rw-r--r--. 1 boinc boinc    576529 Nov 28 23:41 pilot3.tar.gz
[2025-12-05 00:00:17] -rwx------. 1 boinc boinc     36292 Nov 28 23:43 runpilot2-wrapper.sh
[2025-12-05 00:00:17] -rw-r--r--. 1 boinc boinc      5112 Nov 28 23:43 queuedata.json
[2025-12-05 00:00:17] -rw-r--r--. 1 boinc boinc       100 Dec  4 06:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 00:00:17] -rwxr-xr-x. 1 boinc boinc      7986 Dec  4 06:08 run_atlas
[2025-12-05 00:00:17] -rw-r--r--. 1 boinc boinc       105 Dec  4 06:08 job.xml
[2025-12-05 00:00:17] -rw-r--r--. 1 boinc boinc      6393 Dec  4 06:08 init_data.xml
[2025-12-05 00:00:17] -rw-r--r--. 2 boinc boinc 377896702 Dec  4 06:08 EVNT.47531104._000051.pool.root.1
[2025-12-05 00:00:17] -rw-r--r--. 2 boinc boinc     15847 Dec  4 06:08 start_atlas.sh
[2025-12-05 00:00:17] drwxrwx--x. 2 boinc boinc        68 Dec  4 06:08 shared
[2025-12-05 00:00:17] -rw-r--r--. 2 boinc boinc    590125 Dec  4 06:08 input.tar.gz
[2025-12-05 00:00:17] -rw-r--r--. 1 boinc boinc         0 Dec  4 06:08 boinc_lockfile
[2025-12-05 00:00:17] -rw-r--r--. 1 boinc boinc      2879 Dec  4 06:08 pandaJob.out
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc    985548 Dec  4 06:12 agis_schedconf.cvmfs.json
[2025-12-05 00:00:17] drwx------. 5 boinc boinc      4096 Dec  4 06:12 pilot3
[2025-12-05 00:00:17] -rw-r--r--. 1 boinc boinc       533 Dec  4 23:36 boinc_task_state.xml
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc 698636564 Dec  4 23:57 HITS.47531111._000456.pool.root.1
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc      1033 Dec  4 23:57 memory_monitor_summary.json
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc   1516240 Dec  4 23:57 agis_ddmendpoints.agis.ALL.json
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc   2307669 Dec  4 23:57 log.47531111._000456.job.log.tgz.1
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc        95 Dec  4 23:59 pilot_heartbeat.json
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc     27207 Dec  4 23:59 heartbeat.json
[2025-12-05 00:00:17] -rw-r--r--. 1 boinc boinc        29 Dec  4 23:59 wrapper_checkpoint.txt
[2025-12-05 00:00:17] -rw-r--r--. 1 boinc boinc      8192 Dec  4 23:59 boinc_mmap_file
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc      4885 Dec  5 00:00 pilotlog.txt
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc   8598768 Dec  5 00:00 log.47531111._000456.job.log.1
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc       353 Dec  5 00:00 output.list
[2025-12-05 00:00:17] -rw-r--r--. 1 boinc boinc       620 Dec  5 00:00 runtime_log
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc  10946560 Dec  5 00:00 result.tar.gz
[2025-12-05 00:00:17] -rw-r--r--. 1 boinc boinc      8833 Dec  5 00:00 runtime_log.err
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc       661 Dec  5 00:00 KXrMDmwMMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgULKDmqqJ1Ho.diag
[2025-12-05 00:00:17] -rw-r--r--. 1 boinc boinc     21506 Dec  5 00:00 stderr.txt
[2025-12-05 00:00:17] HITS file was successfully produced:
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc 698636564 Dec  4 23:57 shared/HITS.pool.root.1
[2025-12-05 00:00:17]  *** Contents of shared directory: ***
[2025-12-05 00:00:17] total 1062592
[2025-12-05 00:00:17] -rw-r--r--. 2 boinc boinc 377896702 Dec  4 06:08 ATLAS.root_0
[2025-12-05 00:00:17] -rw-r--r--. 2 boinc boinc     15847 Dec  4 06:08 start_atlas.sh
[2025-12-05 00:00:17] -rw-r--r--. 2 boinc boinc    590125 Dec  4 06:08 input.tar.gz
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc 698636564 Dec  4 23:57 HITS.pool.root.1
[2025-12-05 00:00:17] -rw-------. 1 boinc boinc  10946560 Dec  5 00:00 result.tar.gz
00:00:19 (9028): run_atlas exited; CPU time 235273.483169
00:00:19 (9028): called boinc_finish(0)

</stderr_txt>
]]>

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