Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
04:25:11 (340058): wrapper (7.7.26015): starting
04:25:11 (340058): wrapper: running run_atlas (--nthreads 2)
[2025-12-03 04:25:11] Arguments: --nthreads 2
[2025-12-03 04:25:11] Threads: 2
[2025-12-03 04:25:11] Checking for CVMFS
[2025-12-03 04:25:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 04:25:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 04:25:25] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 04:25:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 04:25:26] 2.13.3.0 340290 0 25188 153564 3 1 5339574 6144000 0 130560 0 0 0.000 1291 443 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-12-03 04:25:26] CVMFS is ok
[2025-12-03 04:25:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 04:25:26] Checking for apptainer binary...
[2025-12-03 04:25:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 04:25:26] Running /usr/bin/apptainer --version
[2025-12-03 04:25:26] apptainer version 1.4.4
[2025-12-03 04:25:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 04:25:26] proxy
[2025-12-03 04:25:26] apptainer works
[2025-12-03 04:25:26] Set ATHENA_PROC_NUMBER=2
[2025-12-03 04:25:26] Set ATHENA_CORE_NUMBER=2
[2025-12-03 04:25:26] Starting ATLAS job with PandaID=6895352014
[2025-12-03 04:25:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 23:28:55]  *** The last 200 lines of the pilot log: ***
[2025-12-03 23:28:55] 2025-12-03 12:27:48,179 | INFO     | monitor loop #5186: job 0:6895352014 is in state 'finished'
[2025-12-03 23:28:55] 2025-12-03 12:27:48,182 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 23:28:55] 2025-12-03 12:27:49,139 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 23:28:55] 2025-12-03 12:27:49,140 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3215.6747499999997
[2025-12-03 23:28:55] 2025-12-03 12:27:49,141 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6895352014/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 23:28:55] 2025-12-03 12:27:49,141 | INFO     | extracted standard info from prmon json
[2025-12-03 23:28:55] 2025-12-03 12:27:49,141 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 23:28:55] 2025-12-03 12:27:49,141 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 23:28:55] 2025-12-03 12:27:49,150 | INFO     | fitting pss+swap vs Time
[2025-12-03 23:28:55] 2025-12-03 12:27:49,151 | INFO     | sum of square deviations: 439154597826.99194
[2025-12-03 23:28:55] 2025-12-03 12:27:49,165 | INFO     | sum of deviations: 3363620681667.229
[2025-12-03 23:28:55] 2025-12-03 12:27:49,165 | INFO     | mean x: 1764730617.0026715
[2025-12-03 23:28:55] 2025-12-03 12:27:49,165 | INFO     | mean y: 2831541.589492431
[2025-12-03 23:28:55] 2025-12-03 12:27:49,165 | INFO     | intersect: -13513785226.840742
[2025-12-03 23:28:55] 2025-12-03 12:27:49,166 | INFO     | chi2: 9.44416538778501
[2025-12-03 23:28:55] 2025-12-03 12:27:49,166 | INFO     | sum of square deviations: 433314852039.49194
[2025-12-03 23:28:55] 2025-12-03 12:27:49,180 | INFO     | sum of deviations: 3738250138985.722
[2025-12-03 23:28:55] 2025-12-03 12:27:49,180 | INFO     | mean x: 1764730464.5026834
[2025-12-03 23:28:55] 2025-12-03 12:27:49,180 | INFO     | mean y: 2841323.593023256
[2025-12-03 23:28:55] 2025-12-03 12:27:49,181 | INFO     | intersect: -15221663151.961506
[2025-12-03 23:28:55] 2025-12-03 12:27:49,181 | INFO     | chi2: 6.2366723455452
[2025-12-03 23:28:55] 2025-12-03 12:27:49,181 | INFO     | current chi2=6.2366723455452 (change=33.96269453718324 %)
[2025-12-03 23:28:55] 2025-12-03 12:27:49,182 | INFO     | sum of square deviations: 427527107226.9921
[2025-12-03 23:28:55] 2025-12-03 12:27:49,196 | INFO     | sum of deviations: 3881675805227.118
[2025-12-03 23:28:55] 2025-12-03 12:27:49,196 | INFO     | mean x: 1764730312.0026953
[2025-12-03 23:28:55] 2025-12-03 12:27:49,196 | INFO     | mean y: 2845091.628032345
[2025-12-03 23:28:55] 2025-12-03 12:27:49,196 | INFO     | intersect: -16019790289.980072
[2025-12-03 23:28:55] 2025-12-03 12:27:49,197 | INFO     | chi2: 5.075740826155845
[2025-12-03 23:28:55] 2025-12-03 12:27:49,197 | INFO     | current chi2=5.075740826155845 (change=18.61459854017501 %)
[2025-12-03 23:28:55] 2025-12-03 12:27:49,197 | INFO     | right removable region: 1112
[2025-12-03 23:28:55] 2025-12-03 12:27:49,197 | INFO     | sum of square deviations: 433314850209.49194
[2025-12-03 23:28:55] 2025-12-03 12:27:49,211 | INFO     | sum of deviations: 2987033080334.275
[2025-12-03 23:28:55] 2025-12-03 12:27:49,211 | INFO     | mean x: 1764730769.5026834
[2025-12-03 23:28:55] 2025-12-03 12:27:49,212 | INFO     | mean y: 2841372.0742397136
[2025-12-03 23:28:55] 2025-12-03 12:27:49,212 | INFO     | intersect: -12162237170.329256
[2025-12-03 23:28:55] 2025-12-03 12:27:49,212 | INFO     | chi2: 6.481327536438628
[2025-12-03 23:28:55] 2025-12-03 12:27:49,212 | INFO     | current chi2=6.481327536438628 (change=31.37215126683917 %)
[2025-12-03 23:28:55] 2025-12-03 12:27:49,213 | INFO     | sum of square deviations: 427527103566.99207
[2025-12-03 23:28:55] 2025-12-03 12:27:49,227 | INFO     | sum of deviations: 2731540582648.883
[2025-12-03 23:28:55] 2025-12-03 12:27:49,227 | INFO     | mean x: 1764730922.0026953
[2025-12-03 23:28:55] 2025-12-03 12:27:49,227 | INFO     | mean y: 2848100.371967655
[2025-12-03 23:28:55] 2025-12-03 12:27:49,227 | INFO     | intersect: -11272306365.128246
[2025-12-03 23:28:55] 2025-12-03 12:27:49,227 | INFO     | chi2: 5.2335460634357345
[2025-12-03 23:28:55] 2025-12-03 12:27:49,227 | INFO     | current chi2=5.2335460634357345 (change=19.251942846396048 %)
[2025-12-03 23:28:55] 2025-12-03 12:27:49,227 | INFO     | left removable region: 20
[2025-12-03 23:28:55] 2025-12-03 12:27:49,228 | INFO     | sum of square deviations: 403781173870.9919
[2025-12-03 23:28:55] 2025-12-03 12:27:49,241 | INFO     | sum of deviations: 3180065376450.367
[2025-12-03 23:28:55] 2025-12-03 12:27:49,241 | INFO     | mean x: 1764730891.5027473
[2025-12-03 23:28:55] 2025-12-03 12:27:49,241 | INFO     | mean y: 2863499.70970696
[2025-12-03 23:28:55] 2025-12-03 12:27:49,241 | INFO     | intersect: -13895653741.743698
[2025-12-03 23:28:55] 2025-12-03 12:27:49,242 | INFO     | chi2: 0.8044852355342723
[2025-12-03 23:28:55] 2025-12-03 12:27:49,242 | INFO     | current memory leak: 7.88 B/s (using 1092 data points, chi2=0.80)
[2025-12-03 23:28:55] 2025-12-03 12:27:49,242 | INFO     | could have reported an average CPU frequency of 3125 MHz (41 samples)
[2025-12-03 23:28:55] 2025-12-03 12:27:49,242 | INFO     | ..............................
[2025-12-03 23:28:55] 2025-12-03 12:27:49,242 | INFO     | . Timing measurements:
[2025-12-03 23:28:55] 2025-12-03 12:27:49,242 | INFO     | . get job = 0 s
[2025-12-03 23:28:55] 2025-12-03 12:27:49,243 | INFO     | . initial setup = 15 s
[2025-12-03 23:28:55] 2025-12-03 12:27:49,243 | INFO     | . payload setup = 10 s
[2025-12-03 23:28:55] 2025-12-03 12:27:49,243 | INFO     | . stage-in = 0 s
[2025-12-03 23:28:55] 2025-12-03 12:27:49,243 | INFO     | . payload execution = 68450 s
[2025-12-03 23:28:55] 2025-12-03 12:27:49,243 | INFO     | . stage-out = 6 s
[2025-12-03 23:28:55] 2025-12-03 12:27:49,243 | INFO     | . log creation = 1 s
[2025-12-03 23:28:55] 2025-12-03 12:27:49,243 | INFO     | ..............................
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | 
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | job summary report
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | --------------------------------------------------
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | PanDA job id: 6895352014
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | task id: 47556137
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | errors: (none)
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | pilot state: finished 
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | transexitcode: 0
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | exeerrorcode: 0
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | exeerrordiag: 
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | exitcode: 0
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | exitmsg: OK
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | cpuconsumptiontime: 135517 s
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | nevents: 1000
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | neventsw: 0
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | pid: 350756
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | pgrp: 350756
[2025-12-03 23:28:55] 2025-12-03 12:27:49,299 | INFO     | corecount: 2
[2025-12-03 23:28:55] 2025-12-03 12:27:49,300 | INFO     | event service: False
[2025-12-03 23:28:55] 2025-12-03 12:27:49,300 | INFO     | sizes: {0: 2284322, 3: 2284584, 11: 2284612, 68462: 2342661, 68470: 2351669, 68471: 2351725, 68488: 2352195}
[2025-12-03 23:28:55] 2025-12-03 12:27:49,300 | INFO     | --------------------------------------------------
[2025-12-03 23:28:55] 2025-12-03 12:27:49,300 | INFO     | 
[2025-12-03 23:28:55] 2025-12-03 12:27:49,300 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-12-03 23:28:55] 2025-12-03 12:27:49,322 | INFO     | time since job start (68501s) is within the limit (172800.0s)
[2025-12-03 23:28:55] 2025-12-03 12:27:49,322 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,322 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,322 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,322 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | job 6895352014 has completed (purged errors)
[2025-12-03 23:28:55] 2025-12-03 12:27:49,323 | INFO     | overall cleanup function is called
[2025-12-03 23:28:55] 2025-12-03 12:27:50,416 | INFO     | --- collectZombieJob: --- 10, [350756]
[2025-12-03 23:28:55] 2025-12-03 12:27:50,417 | INFO     | zombie collector waiting for pid 350756
[2025-12-03 23:28:55] 2025-12-03 12:27:50,417 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 23:28:55] 2025-12-03 12:27:50,417 | INFO     | collected zombie processes
[2025-12-03 23:28:55] 2025-12-03 12:27:50,417 | INFO     | will attempt to kill all subprocesses of pid=350756
[2025-12-03 23:28:55] 2025-12-03 12:27:50,463 | INFO     | process IDs to be killed: [350756] (in reverse order)
[2025-12-03 23:28:55] 2025-12-03 12:27:50,488 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 23:28:55] 2025-12-03 12:27:50,488 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 23:28:55] 2025-12-03 12:27:50,489 | INFO     | did not find any defunct processes belonging to 350756
[2025-12-03 23:28:55] 2025-12-03 12:27:50,490 | INFO     | did not find any defunct processes belonging to 350756
[2025-12-03 23:28:55] 2025-12-03 12:27:50,491 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 23:28:55] 2025-12-03 12:27:50,492 | INFO     | ready for new job
[2025-12-03 23:28:55] 2025-12-03 12:27:50,492 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 23:28:55] 2025-12-03 12:27:50,505 | INFO     | ***************************************
[2025-12-03 23:28:55] 2025-12-03 12:27:50,505 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 23:28:55] 2025-12-03 12:27:50,505 | INFO     | ***************************************
[2025-12-03 23:28:55] 2025-12-03 12:27:50,505 | INFO     | 
[2025-12-03 23:28:55] 2025-12-03 12:27:50,506 | INFO     | architecture information:
[2025-12-03 23:28:55] 2025-12-03 12:27:50,506 | INFO     | executing command: cat /etc/os-release
[2025-12-03 23:28:55] 2025-12-03 12:27:50,532 | INFO     | cat /etc/os-release:
[2025-12-03 23:28:55] NAME="CentOS Linux"
[2025-12-03 23:28:55] VERSION="7 (Core)"
[2025-12-03 23:28:55] ID="centos"
[2025-12-03 23:28:55] ID_LIKE="rhel fedora"
[2025-12-03 23:28:55] VERSION_ID="7"
[2025-12-03 23:28:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 23:28:55] ANSI_COLOR="0;31"
[2025-12-03 23:28:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 23:28:55] HOME_URL="https://www.centos.org/"
[2025-12-03 23:28:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 23:28:55] 
[2025-12-03 23:28:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 23:28:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 23:28:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 23:28:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 23:28:55] 
[2025-12-03 23:28:55] 2025-12-03 12:27:50,533 | INFO     | ***************************************
[2025-12-03 23:28:55] 2025-12-03 12:27:51,036 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-12-03 23:28:55] 2025-12-03 12:27:51,051 | INFO     | sufficient remaining disk space (1836254756864 B)
[2025-12-03 23:28:55] 2025-12-03 12:27:51,051 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 23:28:55] 2025-12-03 12:27:51,051 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 23:28:55] 2025-12-03 12:27:51,051 | INFO     | update_server=False
[2025-12-03 23:28:55] 2025-12-03 12:27:51,051 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 23:28:55] 2025-12-03 12:27:51,052 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 23:28:55] 2025-12-03 12:27:51,052 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-03 23:28:55] 2025-12-03 12:27:51,052 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 23:28:55] 2025-12-03 12:27:51,052 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 23:28:55] 2025-12-03 12:27:51,052 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 23:28:55] 2025-12-03 12:27:51,373 | INFO     | all data control threads have been joined
[2025-12-03 23:28:55] 2025-12-03 12:27:51,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 23:28:55] 2025-12-03 12:27:51,696 | INFO     | aborting loop
[2025-12-03 23:28:55] 2025-12-03 12:27:52,007 | INFO     | all payload control threads have been joined
[2025-12-03 23:28:55] 2025-12-03 12:27:52,057 | INFO     | [job] retrieve thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:52,058 | INFO     | [job] queue monitor thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:52,078 | INFO     | [payload] failed_post thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:52,079 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 23:28:55] 2025-12-03 12:27:52,086 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 23:28:55] 2025-12-03 12:27:52,378 | INFO     | [data] control thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:52,613 | INFO     | all job control threads have been joined
[2025-12-03 23:28:55] 2025-12-03 12:27:52,621 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:52,698 | INFO     | [job] job monitor thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:53,013 | INFO     | [payload] control thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:53,071 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:53,124 | INFO     | [job] validate thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:53,137 | INFO     | [data] copytool_in thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:53,152 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:53,424 | INFO     | [payload] validate_post thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:53,619 | INFO     | [job] control thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:54,085 | INFO     | [data] copytool_out thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:27:56,093 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:28:01,680 | INFO     | job.realtimelogging is not enabled
[2025-12-03 23:28:55] 2025-12-03 12:28:02,686 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 23:28:55] 2025-12-03 12:28:48,066 | INFO     | [monitor] cgroup control has ended
[2025-12-03 23:28:55] 2025-12-03 12:28:48,645 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131649512122176)>', '<ExcThread(monitor, started 131648867792640)>']
[2025-12-03 23:28:55] 2025-12-03 12:28:49,348 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 23:28:55] 2025-12-03 12:28:49,349 | INFO     | [monitor] control thread has ended
[2025-12-03 23:28:55] 2025-12-03 12:28:53,685 | INFO     | all workflow threads have been joined
[2025-12-03 23:28:55] 2025-12-03 12:28:53,685 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 23:28:55] 2025-12-03 12:28:53,686 | INFO     | traces error code: 0
[2025-12-03 23:28:55] 2025-12-03 12:28:53,687 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 23:28:55] 2025-12-03 12:28:54,489 [wrapper] ==== pilot stdout END ====
[2025-12-03 23:28:55] 2025-12-03 12:28:54,493 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 23:28:55] 2025-12-03 12:28:54,497 [wrapper] pilotpid: 344373
[2025-12-03 23:28:55] 2025-12-03 12:28:54,500 [wrapper] Pilot exit status: 0
[2025-12-03 23:28:55] 2025-12-03 12:28:54,534 [wrapper] pandaids: 6895352014
[2025-12-03 23:28:55] 2025-12-03 12:28:54,561 [wrapper] cleanup supervisor_pilot  457600 344374
[2025-12-03 23:28:55] 2025-12-03 12:28:54,565 [wrapper] Test setup, not cleaning
[2025-12-03 23:28:55] 2025-12-03 12:28:54,585 [wrapper] apfmon messages muted
[2025-12-03 23:28:55] 2025-12-03 12:28:54,589 [wrapper] ==== wrapper stdout END ====
[2025-12-03 23:28:55] 2025-12-03 12:28:54,592 [wrapper] ==== wrapper stderr END ====
[2025-12-03 23:28:55]  *** Error codes and diagnostics ***
[2025-12-03 23:28:55]     "exeErrorCode": 0,
[2025-12-03 23:28:55]     "exeErrorDiag": "",
[2025-12-03 23:28:55]     "pilotErrorCode": 0,
[2025-12-03 23:28:55]     "pilotErrorDiag": "",
[2025-12-03 23:28:55]  *** Listing of results directory ***
[2025-12-03 23:28:55] total 1322792
[2025-12-03 23:28:55] -rw-r--r-- 1 boinc boinc    576529 Nov 23 13:20 pilot3.tar.gz
[2025-12-03 23:28:55] -rw-r--r-- 1 boinc boinc      5112 Nov 23 13:22 queuedata.json
[2025-12-03 23:28:55] -rwx------ 1 boinc boinc     36292 Nov 23 13:23 runpilot2-wrapper.sh
[2025-12-03 23:28:55] -rw-r--r-- 1 boinc boinc       100 Dec  3 04:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 23:28:55] -rwxr-xr-x 1 boinc boinc      7986 Dec  3 04:25 run_atlas
[2025-12-03 23:28:55] -rw-r--r-- 1 boinc boinc       105 Dec  3 04:25 job.xml
[2025-12-03 23:28:55] -rw-r--r-- 2 boinc boinc 408614321 Dec  3 04:25 EVNT.47483658._000578.pool.root.1
[2025-12-03 23:28:55] -rw-r--r-- 1 boinc boinc      9351 Dec  3 04:25 init_data.xml
[2025-12-03 23:28:55] -rw-r--r-- 2 boinc boinc     15847 Dec  3 04:25 start_atlas.sh
[2025-12-03 23:28:55] drwxrwx--x 2 boinc boinc      4096 Dec  3 04:25 shared
[2025-12-03 23:28:55] -rw-r--r-- 2 boinc boinc    590110 Dec  3 04:25 input.tar.gz
[2025-12-03 23:28:55] -rw-r--r-- 1 boinc boinc         0 Dec  3 04:25 boinc_lockfile
[2025-12-03 23:28:55] -rw-r--r-- 1 boinc boinc      2786 Dec  3 04:25 pandaJob.out
[2025-12-03 23:28:55] -rw------- 1 boinc boinc        46 Dec  3 04:25 setup.sh.local
[2025-12-03 23:28:55] -rw------- 1 boinc boinc    988858 Dec  3 04:25 agis_schedconf.cvmfs.json
[2025-12-03 23:28:55] drwx------ 5 boinc boinc      4096 Dec  3 04:26 pilot3
[2025-12-03 23:28:55] -rw-r--r-- 1 boinc boinc       532 Dec  3 23:20 boinc_task_state.xml
[2025-12-03 23:28:55] -rw------- 1 boinc boinc 919774174 Dec  3 23:26 HITS.47556137._005733.pool.root.1
[2025-12-03 23:28:55] -rw------- 1 boinc boinc        95 Dec  3 23:27 pilot_heartbeat.json
[2025-12-03 23:28:55] -rw------- 1 boinc boinc      1061 Dec  3 23:27 memory_monitor_summary.json
[2025-12-03 23:28:55] -rw------- 1 boinc boinc   1516240 Dec  3 23:27 agis_ddmendpoints.agis.ALL.json
[2025-12-03 23:28:55] -rw------- 1 boinc boinc   1530788 Dec  3 23:27 log.47556137._005733.job.log.tgz.1
[2025-12-03 23:28:55] -rw------- 1 boinc boinc      8643 Dec  3 23:27 heartbeat.json
[2025-12-03 23:28:55] -rw-r--r-- 1 boinc boinc      8192 Dec  3 23:28 boinc_mmap_file
[2025-12-03 23:28:55] -rw-r--r-- 1 boinc boinc        29 Dec  3 23:28 wrapper_checkpoint.txt
[2025-12-03 23:28:55] -rw------- 1 boinc boinc      4633 Dec  3 23:28 pilotlog.txt
[2025-12-03 23:28:55] -rw------- 1 boinc boinc   9581051 Dec  3 23:28 log.47556137._005733.job.log.1
[2025-12-03 23:28:55] -rw------- 1 boinc boinc       353 Dec  3 23:28 output.list
[2025-12-03 23:28:55] -rw-r--r-- 1 boinc boinc       620 Dec  3 23:28 runtime_log
[2025-12-03 23:28:55] -rw------- 1 boinc boinc  11130880 Dec  3 23:28 result.tar.gz
[2025-12-03 23:28:55] -rw------- 1 boinc boinc       658 Dec  3 23:28 snyMDmiwEh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtXKKDmtKZTAn.diag
[2025-12-03 23:28:55] -rw-r--r-- 1 boinc boinc      9364 Dec  3 23:28 runtime_log.err
[2025-12-03 23:28:55] -rw-r--r-- 1 boinc boinc     20913 Dec  3 23:28 stderr.txt
[2025-12-03 23:28:55] HITS file was successfully produced:
[2025-12-03 23:28:55] -rw------- 1 boinc boinc 919774174 Dec  3 23:26 shared/HITS.pool.root.1
[2025-12-03 23:28:55]  *** Contents of shared directory: ***
[2025-12-03 23:28:55] total 1308736
[2025-12-03 23:28:55] -rw-r--r-- 2 boinc boinc 408614321 Dec  3 04:25 ATLAS.root_0
[2025-12-03 23:28:55] -rw-r--r-- 2 boinc boinc     15847 Dec  3 04:25 start_atlas.sh
[2025-12-03 23:28:55] -rw-r--r-- 2 boinc boinc    590110 Dec  3 04:25 input.tar.gz
[2025-12-03 23:28:55] -rw------- 1 boinc boinc 919774174 Dec  3 23:26 HITS.pool.root.1
[2025-12-03 23:28:55] -rw------- 1 boinc boinc  11130880 Dec  3 23:28 result.tar.gz
23:28:57 (340058): run_atlas exited; CPU time 135325.504350
23:28:57 (340058): called boinc_finish(0)

</stderr_txt>
]]>

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