Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
21:49:12 (12784): wrapper (7.7.26015): starting
21:49:12 (12784): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 21:49:12] Arguments: --nthreads 8
[2025-12-02 21:49:12] Threads: 8
[2025-12-02 21:49:12] Checking for CVMFS
[2025-12-02 21:49:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 21:49:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 21:49:13] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 21:49:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 21:49:13] 2.11.0.0 4686 74690 110816 153568 1 80 3738985 4096000 3788 130560 0 12875017 99.767 5583846 552 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 21:49:13] CVMFS is ok
[2025-12-02 21:49:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 21:49:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 21:49:13] Further information can be found at the LHC@home message board.
[2025-12-02 21:49:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 21:49:13] Checking for apptainer binary...
[2025-12-02 21:49:13] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 21:49:13] apptainer is not installed, using version from CVMFS
[2025-12-02 21:49:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 21:49:13] WARNING: Environment variable TMPDIR already has value [/tmp/job_10945343/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node019
[2025-12-02 21:49:13] apptainer works
[2025-12-02 21:49:13] Set ATHENA_PROC_NUMBER=8
[2025-12-02 21:49:13] Set ATHENA_CORE_NUMBER=8
[2025-12-02 21:49:13] Starting ATLAS job with PandaID=6898490613
[2025-12-02 21:49:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10945343/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 02:43:06]  *** The last 200 lines of the pilot log: ***
[2025-12-03 02:43:06] 2025-12-03 01:42:30,236 | INFO     | monitor loop #1247: job 0:6898490613 is in state 'finished'
[2025-12-03 02:43:06] 2025-12-03 01:42:30,236 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:43:06] 2025-12-03 01:42:30,778 | INFO     | time since job start (17591s) is within the limit (172800.0s)
[2025-12-03 02:43:06] 2025-12-03 01:42:31,023 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-03 02:43:06] 2025-12-03 01:42:32,033 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 02:43:06] 2025-12-03 01:42:32,033 | INFO     | job 6898490613 has state=finished
[2025-12-03 02:43:06] 2025-12-03 01:42:32,033 | INFO     | preparing for final server update for job 6898490613 in state='finished'
[2025-12-03 02:43:06] 2025-12-03 01:42:32,033 | INFO     | this job has now completed (state=finished)
[2025-12-03 02:43:06] 2025-12-03 01:42:32,033 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-03 02:43:06] 2025-12-03 01:42:32,033 | INFO     | log transfer has been attempted: DONE
[2025-12-03 02:43:06] 2025-12-03 01:42:32,033 | INFO     | job 6898490613 has finished - writing final server update
[2025-12-03 02:43:06] 2025-12-03 01:42:32,034 | INFO     | total number of processed events: 1000 (read)
[2025-12-03 02:43:06] 2025-12-03 01:42:32,034 | INFO     | executing command: lscpu
[2025-12-03 02:43:06] 2025-12-03 01:42:32,077 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 02:43:06] 2025-12-03 01:42:32,738 | INFO     | monitor loop #1248: job 0:6898490613 is in state 'finished'
[2025-12-03 02:43:06] 2025-12-03 01:42:32,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:43:06] 2025-12-03 01:42:32,783 | INFO     | time since job start (17593s) is within the limit (172800.0s)
[2025-12-03 02:43:06] 2025-12-03 01:42:34,572 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 02:43:06] 2025-12-03 01:42:34,592 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2522.8737578125
[2025-12-03 02:43:06] 2025-12-03 01:42:34,616 | INFO     | using path: /tmp/job_10945343/atlas/pilot/slots/0/PanDA_Pilot-6898490613/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 02:43:06] 2025-12-03 01:42:34,616 | INFO     | extracted standard info from prmon json
[2025-12-03 02:43:06] 2025-12-03 01:42:34,616 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 02:43:06] 2025-12-03 01:42:34,616 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 02:43:06] 2025-12-03 01:42:34,619 | INFO     | fitting pss+swap vs Time
[2025-12-03 02:43:06] 2025-12-03 01:42:34,619 | INFO     | sum of square deviations: 7407141672.0
[2025-12-03 02:43:06] 2025-12-03 01:42:34,620 | INFO     | sum of deviations: 1060539131857.5
[2025-12-03 02:43:06] 2025-12-03 01:42:34,621 | INFO     | mean x: 1764717332.5
[2025-12-03 02:43:06] 2025-12-03 01:42:34,621 | INFO     | mean y: 3407613.84375
[2025-12-03 02:43:06] 2025-12-03 01:42:34,621 | INFO     | intersect: -252665148039.43246
[2025-12-03 02:43:06] 2025-12-03 01:42:34,621 | INFO     | chi2: 8.704734456927783
[2025-12-03 02:43:06] 2025-12-03 01:42:34,621 | INFO     | sum of square deviations: 7028008982.0
[2025-12-03 02:43:06] 2025-12-03 01:42:34,622 | INFO     | sum of deviations: 1098542499962.0002
[2025-12-03 02:43:06] 2025-12-03 01:42:34,622 | INFO     | mean x: 1764717180.0
[2025-12-03 02:43:06] 2025-12-03 01:42:34,622 | INFO     | mean y: 3422607.71024735
[2025-12-03 02:43:06] 2025-12-03 01:42:34,622 | INFO     | intersect: -275838117664.68256
[2025-12-03 02:43:06] 2025-12-03 01:42:34,623 | INFO     | chi2: 7.334841219181924
[2025-12-03 02:43:06] 2025-12-03 01:42:34,623 | INFO     | current chi2=7.334841219181924 (change=15.737335176900318 %)
[2025-12-03 02:43:06] 2025-12-03 01:42:34,623 | INFO     | right removable region: 282
[2025-12-03 02:43:06] 2025-12-03 01:42:34,623 | INFO     | sum of square deviations: 7028008982.0
[2025-12-03 02:43:06] 2025-12-03 01:42:34,624 | INFO     | sum of deviations: 986672464778.9998
[2025-12-03 02:43:06] 2025-12-03 01:42:34,624 | INFO     | mean x: 1764717485.0
[2025-12-03 02:43:06] 2025-12-03 01:42:34,624 | INFO     | mean y: 3437167.9363957597
[2025-12-03 02:43:06] 2025-12-03 01:42:34,624 | INFO     | intersect: -247747832789.61066
[2025-12-03 02:43:06] 2025-12-03 01:42:34,624 | INFO     | chi2: 7.271291129288514
[2025-12-03 02:43:06] 2025-12-03 01:42:34,624 | INFO     | current chi2=7.271291129288514 (change=16.46739868668186 %)
[2025-12-03 02:43:06] 2025-12-03 01:42:34,624 | INFO     | left removable region: 10
[2025-12-03 02:43:06] 2025-12-03 01:42:34,624 | INFO     | sum of square deviations: 6239923508.0
[2025-12-03 02:43:06] 2025-12-03 01:42:34,625 | INFO     | sum of deviations: 973287360896.4999
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | mean x: 1764717454.5
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | mean y: 3456514.0110294116
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | intersect: -275252673119.0277
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | chi2: 5.611787042256899
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | current memory leak: 155.98 B/s (using 272 data points, chi2=5.61)
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | could have reported an average CPU frequency of 2511 MHz (13 samples)
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | ..............................
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | . Timing measurements:
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | . get job = 0 s
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | . initial setup = 1 s
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | . payload setup = 3 s
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | . stage-in = 0 s
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | . payload execution = 17565 s
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | . stage-out = 1 s
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | . log creation = 0 s
[2025-12-03 02:43:06] 2025-12-03 01:42:34,626 | INFO     | ..............................
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | 
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | job summary report
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | --------------------------------------------------
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | PanDA job id: 6898490613
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | task id: 47556161
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | errors: (none)
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | pilot state: finished 
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | transexitcode: 0
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | exeerrorcode: 0
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | exeerrordiag: 
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | exitcode: 0
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | exitmsg: OK
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | cpuconsumptiontime: 135780 s
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | nevents: 1000
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | neventsw: 0
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | pid: 25950
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | pgrp: 25950
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | corecount: 8
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | event service: False
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | sizes: {0: 2284160, 1: 2284470, 3: 2284732, 11: 2284760, 17573: 2317765, 17576: 2326789, 17579: 2326973, 17582: 2327219}
[2025-12-03 02:43:06] 2025-12-03 01:42:34,678 | INFO     | --------------------------------------------------
[2025-12-03 02:43:06] 2025-12-03 01:42:34,679 | INFO     | 
[2025-12-03 02:43:06] 2025-12-03 01:42:34,679 | INFO     | executing command: ls -lF /tmp/job_10945343/atlas/pilot/slots/0
[2025-12-03 02:43:06] 2025-12-03 01:42:34,689 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,689 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,689 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,689 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,689 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,689 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,689 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | job 6898490613 has completed (purged errors)
[2025-12-03 02:43:06] 2025-12-03 01:42:34,690 | INFO     | overall cleanup function is called
[2025-12-03 02:43:06] 2025-12-03 01:42:35,697 | INFO     | --- collectZombieJob: --- 10, [25950]
[2025-12-03 02:43:06] 2025-12-03 01:42:35,697 | INFO     | zombie collector waiting for pid 25950
[2025-12-03 02:43:06] 2025-12-03 01:42:35,697 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 02:43:06] 2025-12-03 01:42:35,697 | INFO     | collected zombie processes
[2025-12-03 02:43:06] 2025-12-03 01:42:35,697 | INFO     | will attempt to kill all subprocesses of pid=25950
[2025-12-03 02:43:06] 2025-12-03 01:42:35,867 | INFO     | process IDs to be killed: [25950] (in reverse order)
[2025-12-03 02:43:06] 2025-12-03 01:42:35,923 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 02:43:06] 2025-12-03 01:42:35,923 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 02:43:06] 2025-12-03 01:42:35,929 | INFO     | did not find any defunct processes belonging to 25950
[2025-12-03 02:43:06] 2025-12-03 01:42:35,935 | INFO     | did not find any defunct processes belonging to 25950
[2025-12-03 02:43:06] 2025-12-03 01:42:35,935 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 02:43:06] 2025-12-03 01:42:35,935 | INFO     | ready for new job
[2025-12-03 02:43:06] 2025-12-03 01:42:35,935 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 02:43:06] 2025-12-03 01:42:35,936 | INFO     | ***************************************
[2025-12-03 02:43:06] 2025-12-03 01:42:35,936 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 02:43:06] 2025-12-03 01:42:35,936 | INFO     | ***************************************
[2025-12-03 02:43:06] 2025-12-03 01:42:35,936 | INFO     | 
[2025-12-03 02:43:06] 2025-12-03 01:42:35,953 | INFO     | architecture information:
[2025-12-03 02:43:06] 2025-12-03 01:42:35,953 | INFO     | executing command: cat /etc/os-release
[2025-12-03 02:43:06] 2025-12-03 01:42:35,959 | INFO     | cat /etc/os-release:
[2025-12-03 02:43:06] NAME="CentOS Linux"
[2025-12-03 02:43:06] VERSION="7 (Core)"
[2025-12-03 02:43:06] ID="centos"
[2025-12-03 02:43:06] ID_LIKE="rhel fedora"
[2025-12-03 02:43:06] VERSION_ID="7"
[2025-12-03 02:43:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 02:43:06] ANSI_COLOR="0;31"
[2025-12-03 02:43:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 02:43:06] HOME_URL="https://www.centos.org/"
[2025-12-03 02:43:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 02:43:06] 
[2025-12-03 02:43:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 02:43:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 02:43:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 02:43:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 02:43:06] 
[2025-12-03 02:43:06] 2025-12-03 01:42:35,959 | INFO     | ***************************************
[2025-12-03 02:43:06] 2025-12-03 01:42:36,462 | INFO     | executing command: df -mP /tmp/job_10945343/atlas/pilot/slots/0
[2025-12-03 02:43:06] 2025-12-03 01:42:36,470 | INFO     | sufficient remaining disk space (221530554368 B)
[2025-12-03 02:43:06] 2025-12-03 01:42:36,470 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 02:43:06] 2025-12-03 01:42:36,470 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 02:43:06] 2025-12-03 01:42:36,470 | INFO     | update_server=False
[2025-12-03 02:43:06] 2025-12-03 01:42:36,470 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 02:43:06] 2025-12-03 01:42:36,470 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:43:06] 2025-12-03 01:42:36,470 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 02:43:06] 2025-12-03 01:42:36,470 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:43:06] 2025-12-03 01:42:36,470 | INFO     | aborting loop
[2025-12-03 02:43:06] 2025-12-03 01:42:36,678 | INFO     | all job control threads have been joined
[2025-12-03 02:43:06] 2025-12-03 01:42:37,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 02:43:06] 2025-12-03 01:42:37,389 | INFO     | all data control threads have been joined
[2025-12-03 02:43:06] 2025-12-03 01:42:37,475 | INFO     | [job] retrieve thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:37,475 | INFO     | [job] queue monitor thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:37,476 | INFO     | [job] job monitor thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:37,531 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:37,561 | INFO     | all payload control threads have been joined
[2025-12-03 02:43:06] 2025-12-03 01:42:37,683 | INFO     | [job] control thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:37,771 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:37,775 | INFO     | [job] validate thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:37,843 | INFO     | [payload] validate_post thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:38,028 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:38,059 | INFO     | [data] copytool_in thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:38,246 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:38,394 | INFO     | [data] control thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:38,475 | INFO     | [data] copytool_out thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:38,566 | INFO     | [payload] control thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:38,674 | INFO     | [payload] failed_post thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:41,080 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 02:43:06] 2025-12-03 01:42:48,627 | INFO     | [monitor] cgroup control has ended
[2025-12-03 02:43:06] 2025-12-03 01:42:49,115 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067122944)>']
[2025-12-03 02:43:06] 2025-12-03 01:42:54,140 | INFO     | all workflow threads have been joined
[2025-12-03 02:43:06] 2025-12-03 01:42:54,140 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 02:43:06] 2025-12-03 01:42:54,140 | INFO     | traces error code: 0
[2025-12-03 02:43:06] 2025-12-03 01:42:54,140 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 02:43:06] 2025-12-03 01:43:06,065 | INFO     | PID=17584 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 02:43:06] 2025-12-03 01:43:06,065 | INFO     | .. there are 5 such processes running
[2025-12-03 02:43:06] 2025-12-03 01:43:06,065 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 02:43:06] 2025-12-03 01:43:06,066 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 02:43:06] 2025-12-03 01:43:06,066 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 02:43:06] 2025-12-03 01:43:06,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 02:43:06] 2025-12-03 01:43:06,066 | INFO     | [monitor] control thread has ended
[2025-12-03 02:43:06] 2025-12-03 01:43:06,125 [wrapper] ==== pilot stdout END ====
[2025-12-03 02:43:06] 2025-12-03 01:43:06,127 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 02:43:06] 2025-12-03 01:43:06,128 [wrapper] pilotpid: 17584
[2025-12-03 02:43:06] 2025-12-03 01:43:06,129 [wrapper] Pilot exit status: 0
[2025-12-03 02:43:06] 2025-12-03 01:43:06,134 [wrapper] pandaids: 6898490613
[2025-12-03 02:43:06] 2025-12-03 01:43:06,171 [wrapper] cleanup supervisor_pilot  2077 17585
[2025-12-03 02:43:06] 2025-12-03 01:43:06,172 [wrapper] Test setup, not cleaning
[2025-12-03 02:43:06] 2025-12-03 01:43:06,173 [wrapper] apfmon messages muted
[2025-12-03 02:43:06] 2025-12-03 01:43:06,175 [wrapper] ==== wrapper stdout END ====
[2025-12-03 02:43:06] 2025-12-03 01:43:06,176 [wrapper] ==== wrapper stderr END ====
[2025-12-03 02:43:06]  *** Error codes and diagnostics ***
[2025-12-03 02:43:06]     "exeErrorCode": 0,
[2025-12-03 02:43:06]     "exeErrorDiag": "",
[2025-12-03 02:43:06]     "pilotErrorCode": 0,
[2025-12-03 02:43:06]     "pilotErrorDiag": "",
[2025-12-03 02:43:06]  *** Listing of results directory ***
[2025-12-03 02:43:06] total 1301344
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user    576529 Nov 26 17:12 pilot3.tar.gz
[2025-12-03 02:43:06] -rwx------ 1 mf493845 unix-user     36292 Nov 26 17:36 runpilot2-wrapper.sh
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user      5112 Nov 26 17:37 queuedata.json
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user       100 Dec  2 20:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 02:43:06] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 20:05 run_atlas
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user       105 Dec  2 20:05 job.xml
[2025-12-03 02:43:06] -rw-r--r-- 2 mf493845 unix-user 407008064 Dec  2 21:49 EVNT.47483658._002651.pool.root.1
[2025-12-03 02:43:06] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 21:49 start_atlas.sh
[2025-12-03 02:43:06] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 21:49 shared
[2025-12-03 02:43:06] -rw-r--r-- 2 mf493845 unix-user    590110 Dec  2 21:49 input.tar.gz
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user      6390 Dec  2 21:49 init_data.xml
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user         0 Dec  2 21:49 boinc_setup_complete
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user      8192 Dec  2 21:49 boinc_mmap_file
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user         0 Dec  2 21:49 boinc_lockfile
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user      2787 Dec  2 21:49 pandaJob.out
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user    989224 Dec  2 21:49 agis_schedconf.cvmfs.json
[2025-12-03 02:43:06] drwx------ 5 mf493845 unix-user       440 Dec  2 21:49 pilot3
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user 913578031 Dec  3 02:42 HITS.47556161._006335.pool.root.1
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user      1034 Dec  3 02:42 memory_monitor_summary.json
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user   1516240 Dec  3 02:42 agis_ddmendpoints.agis.ALL.json
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user   1579892 Dec  3 02:42 log.47556161._006335.job.log.tgz.1
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user      8594 Dec  3 02:42 heartbeat.json
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user       820 Dec  3 02:43 pilotlog.txt
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user        95 Dec  3 02:43 pilot_heartbeat.json
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user   2472362 Dec  3 02:43 log.47556161._006335.job.log.1
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user       353 Dec  3 02:43 output.list
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user       620 Dec  3 02:43 runtime_log
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user   4075520 Dec  3 02:43 result.tar.gz
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user      9221 Dec  3 02:43 runtime_log.err
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user       651 Dec  3 02:43 HemMDmBgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmu5JKDmKhkf1m.diag
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user     22242 Dec  3 02:43 stderr.txt
[2025-12-03 02:43:06] HITS file was successfully produced:
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user 913578031 Dec  3 02:42 shared/HITS.pool.root.1
[2025-12-03 02:43:06]  *** Contents of shared directory: ***
[2025-12-03 02:43:06] total 1294216
[2025-12-03 02:43:06] -rw-r--r-- 2 mf493845 unix-user 407008064 Dec  2 21:49 ATLAS.root_0
[2025-12-03 02:43:06] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 21:49 start_atlas.sh
[2025-12-03 02:43:06] -rw-r--r-- 2 mf493845 unix-user    590110 Dec  2 21:49 input.tar.gz
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user 913578031 Dec  3 02:42 HITS.pool.root.1
[2025-12-03 02:43:06] -rw------- 1 mf493845 unix-user   4075520 Dec  3 02:43 result.tar.gz
02:43:07 (12784): run_atlas exited; CPU time 136140.914607
02:43:07 (12784): called boinc_finish(0)

</stderr_txt>
]]>

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