Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
09:28:28 (2305443): wrapper (7.7.26015): starting
09:28:28 (2305443): wrapper: running run_atlas (--nthreads 4)
[2025-12-02 09:28:28] Arguments: --nthreads 4
[2025-12-02 09:28:28] Threads: 4
[2025-12-02 09:28:28] Checking for CVMFS
[2025-12-02 09:28:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 09:28:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 09:28:29] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 09:28:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 09:28:29] 2.13.3.0 3932 2747 64604 153562 3 109 3545928 20480000 5100 130560 0 7190111 99.811 1261994 895 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-02 09:28:29] CVMFS is ok
[2025-12-02 09:28:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 09:28:29] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-02 09:28:29] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-02 09:28:29] Further information can be found at the LHC@home message board.
[2025-12-02 09:28:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 09:28:29] Checking for apptainer binary...
[2025-12-02 09:28:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 09:28:29] Running /usr/bin/apptainer --version
[2025-12-02 09:28:29] apptainer version 1.4.3
[2025-12-02 09:28:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 09:28:29] phantom
[2025-12-02 09:28:29] apptainer works
[2025-12-02 09:28:29] Set ATHENA_PROC_NUMBER=4
[2025-12-02 09:28:29] Set ATHENA_CORE_NUMBER=4
[2025-12-02 09:28:29] Starting ATLAS job with PandaID=6905025584
[2025-12-02 09:28:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 18:22:36]  *** The last 200 lines of the pilot log: ***
[2025-12-02 18:22:36] 2025-12-03 01:22:02,690 | INFO     | monitor loop #2398: job 0:6905025584 is in state 'finished'
[2025-12-02 18:22:36] 2025-12-03 01:22:02,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 18:22:36] 2025-12-03 01:22:03,040 | INFO     | time since job start (32003s) is within the limit (172800.0s)
[2025-12-02 18:22:36] 2025-12-03 01:22:03,478 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 18:22:36] 2025-12-03 01:22:03,482 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3909.5839062499995
[2025-12-02 18:22:36] 2025-12-03 01:22:03,486 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6905025584/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 18:22:36] 2025-12-03 01:22:03,487 | INFO     | extracted standard info from prmon json
[2025-12-02 18:22:36] 2025-12-03 01:22:03,487 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 18:22:36] 2025-12-03 01:22:03,487 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 18:22:36] 2025-12-03 01:22:03,492 | INFO     | fitting pss+swap vs Time
[2025-12-02 18:22:36] 2025-12-03 01:22:03,493 | INFO     | sum of square deviations: 44869864550.0
[2025-12-02 18:22:36] 2025-12-03 01:22:03,497 | INFO     | sum of deviations: 82747235232.99997
[2025-12-02 18:22:36] 2025-12-03 01:22:03,498 | INFO     | mean x: 1764708925.0
[2025-12-02 18:22:36] 2025-12-03 01:22:03,498 | INFO     | mean y: 2712599.5428571426
[2025-12-02 18:22:36] 2025-12-03 01:22:03,498 | INFO     | intersect: -3251694027.2484756
[2025-12-02 18:22:36] 2025-12-03 01:22:03,498 | INFO     | chi2: 4.079186734403086
[2025-12-02 18:22:36] 2025-12-03 01:22:03,499 | INFO     | sum of square deviations: 43600036090.0
[2025-12-02 18:22:36] 2025-12-03 01:22:03,503 | INFO     | sum of deviations: 205269953901.49997
[2025-12-02 18:22:36] 2025-12-03 01:22:03,503 | INFO     | mean x: 1764708772.5
[2025-12-02 18:22:36] 2025-12-03 01:22:03,503 | INFO     | mean y: 2727277.9903846155
[2025-12-02 18:22:36] 2025-12-03 01:22:03,503 | INFO     | intersect: -8305561449.86529
[2025-12-02 18:22:36] 2025-12-03 01:22:03,503 | INFO     | chi2: 2.0530261966088474
[2025-12-02 18:22:36] 2025-12-03 01:22:03,504 | INFO     | current chi2=2.0530261966088474 (change=49.67069834548111 %)
[2025-12-02 18:22:36] 2025-12-03 01:22:03,504 | INFO     | sum of square deviations: 42354394130.0
[2025-12-02 18:22:36] 2025-12-03 01:22:03,508 | INFO     | sum of deviations: 201849574864.00003
[2025-12-02 18:22:36] 2025-12-03 01:22:03,508 | INFO     | mean x: 1764708620.0
[2025-12-02 18:22:36] 2025-12-03 01:22:03,509 | INFO     | mean y: 2726859.3844660195
[2025-12-02 18:22:36] 2025-12-03 01:22:03,509 | INFO     | intersect: -8407396624.203096
[2025-12-02 18:22:36] 2025-12-03 01:22:03,509 | INFO     | chi2: 2.053223075124704
[2025-12-02 18:22:36] 2025-12-03 01:22:03,509 | INFO     | current chi2=2.053223075124704 (change=-0.009589673827911671 %)
[2025-12-02 18:22:36] 2025-12-03 01:22:03,509 | INFO     | right removable region: 514
[2025-12-02 18:22:36] 2025-12-03 01:22:03,510 | INFO     | sum of square deviations: 43600036090.0
[2025-12-02 18:22:36] 2025-12-03 01:22:03,514 | INFO     | sum of deviations: -33318593023.000004
[2025-12-02 18:22:36] 2025-12-03 01:22:03,514 | INFO     | mean x: 1764709077.5
[2025-12-02 18:22:36] 2025-12-03 01:22:03,514 | INFO     | mean y: 2726493.619230769
[2025-12-02 18:22:36] 2025-12-03 01:22:03,514 | INFO     | intersect: 1351294724.9813592
[2025-12-02 18:22:36] 2025-12-03 01:22:03,515 | INFO     | chi2: 2.1323749770539293
[2025-12-02 18:22:36] 2025-12-03 01:22:03,515 | INFO     | current chi2=2.1323749770539293 (change=47.72548755687295 %)
[2025-12-02 18:22:36] 2025-12-03 01:22:03,515 | INFO     | sum of square deviations: 42354394130.0
[2025-12-02 18:22:36] 2025-12-03 01:22:03,519 | INFO     | sum of deviations: -36901584366.0
[2025-12-02 18:22:36] 2025-12-03 01:22:03,520 | INFO     | mean x: 1764709230.0
[2025-12-02 18:22:36] 2025-12-03 01:22:03,520 | INFO     | mean y: 2726930.633009709
[2025-12-02 18:22:36] 2025-12-03 01:22:03,520 | INFO     | intersect: 1540243116.8503544
[2025-12-02 18:22:36] 2025-12-03 01:22:03,520 | INFO     | chi2: 2.130928220464658
[2025-12-02 18:22:36] 2025-12-03 01:22:03,520 | INFO     | current chi2=2.130928220464658 (change=0.06784719408357145 %)
[2025-12-02 18:22:36] 2025-12-03 01:22:03,520 | INFO     | left removable region: 20
[2025-12-02 18:22:36] 2025-12-03 01:22:03,521 | INFO     | sum of square deviations: 37381566007.5
[2025-12-02 18:22:36] 2025-12-03 01:22:03,525 | INFO     | sum of deviations: 83795057151.50002
[2025-12-02 18:22:36] 2025-12-03 01:22:03,525 | INFO     | mean x: 1764709199.5
[2025-12-02 18:22:36] 2025-12-03 01:22:03,525 | INFO     | mean y: 2741446.354251012
[2025-12-02 18:22:36] 2025-12-03 01:22:03,525 | INFO     | intersect: -3953056130.4035516
[2025-12-02 18:22:36] 2025-12-03 01:22:03,525 | INFO     | chi2: 0.07801886927210615
[2025-12-02 18:22:36] 2025-12-03 01:22:03,525 | INFO     | current memory leak: 2.24 B/s (using 494 data points, chi2=0.08)
[2025-12-02 18:22:36] 2025-12-03 01:22:03,526 | INFO     | could have reported an average CPU frequency of 4001 MHz (21 samples)
[2025-12-02 18:22:36] 2025-12-03 01:22:03,526 | INFO     | ..............................
[2025-12-02 18:22:36] 2025-12-03 01:22:03,526 | INFO     | . Timing measurements:
[2025-12-02 18:22:36] 2025-12-03 01:22:03,526 | INFO     | . get job = 0 s
[2025-12-02 18:22:36] 2025-12-03 01:22:03,526 | INFO     | . initial setup = 4 s
[2025-12-02 18:22:36] 2025-12-03 01:22:03,526 | INFO     | . payload setup = 6 s
[2025-12-02 18:22:36] 2025-12-03 01:22:03,526 | INFO     | . stage-in = 0 s
[2025-12-02 18:22:36] 2025-12-03 01:22:03,526 | INFO     | . payload execution = 31969 s
[2025-12-02 18:22:36] 2025-12-03 01:22:03,526 | INFO     | . stage-out = 3 s
[2025-12-02 18:22:36] 2025-12-03 01:22:03,526 | INFO     | . log creation = 0 s
[2025-12-02 18:22:36] 2025-12-03 01:22:03,526 | INFO     | ..............................
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | 
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | job summary report
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | --------------------------------------------------
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | PanDA job id: 6905025584
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | task id: 47538113
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | errors: (none)
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | pilot state: finished 
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | transexitcode: 0
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | exeerrorcode: 0
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | exeerrordiag: 
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | exitcode: 0
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | exitmsg: OK
[2025-12-02 18:22:36] 2025-12-03 01:22:03,613 | INFO     | cpuconsumptiontime: 126624 s
[2025-12-02 18:22:36] 2025-12-03 01:22:03,614 | INFO     | nevents: 1000
[2025-12-02 18:22:36] 2025-12-03 01:22:03,614 | INFO     | neventsw: 0
[2025-12-02 18:22:36] 2025-12-03 01:22:03,614 | INFO     | pid: 2316636
[2025-12-02 18:22:36] 2025-12-03 01:22:03,614 | INFO     | pgrp: 2316636
[2025-12-02 18:22:36] 2025-12-03 01:22:03,614 | INFO     | corecount: 4
[2025-12-02 18:22:36] 2025-12-03 01:22:03,614 | INFO     | event service: False
[2025-12-02 18:22:36] 2025-12-03 01:22:03,614 | INFO     | sizes: {0: 2284407, 1: 2284407, 3: 2284697, 11: 2284725, 31979: 2343040, 31984: 2352048, 31987: 2352232, 31990: 2352478}
[2025-12-02 18:22:36] 2025-12-03 01:22:03,614 | INFO     | --------------------------------------------------
[2025-12-02 18:22:36] 2025-12-03 01:22:03,614 | INFO     | 
[2025-12-02 18:22:36] 2025-12-03 01:22:03,614 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2025-12-02 18:22:36] 2025-12-03 01:22:03,629 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,629 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,629 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,629 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,629 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,629 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 18:22:36] 2025-12-03 01:22:03,630 | INFO     | job 6905025584 has completed (purged errors)
[2025-12-02 18:22:36] 2025-12-03 01:22:03,631 | INFO     | overall cleanup function is called
[2025-12-02 18:22:36] 2025-12-03 01:22:04,643 | INFO     | --- collectZombieJob: --- 10, [2316636]
[2025-12-02 18:22:36] 2025-12-03 01:22:04,643 | INFO     | zombie collector waiting for pid 2316636
[2025-12-02 18:22:36] 2025-12-03 01:22:04,643 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 18:22:36] 2025-12-03 01:22:04,643 | INFO     | collected zombie processes
[2025-12-02 18:22:36] 2025-12-03 01:22:04,643 | INFO     | will attempt to kill all subprocesses of pid=2316636
[2025-12-02 18:22:36] 2025-12-03 01:22:04,779 | INFO     | process IDs to be killed: [2316636] (in reverse order)
[2025-12-02 18:22:36] 2025-12-03 01:22:04,832 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 18:22:36] 2025-12-03 01:22:04,832 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 18:22:36] 2025-12-03 01:22:04,836 | INFO     | did not find any defunct processes belonging to 2316636
[2025-12-02 18:22:36] 2025-12-03 01:22:04,840 | INFO     | did not find any defunct processes belonging to 2316636
[2025-12-02 18:22:36] 2025-12-03 01:22:04,841 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 18:22:36] 2025-12-03 01:22:04,841 | INFO     | ready for new job
[2025-12-02 18:22:36] 2025-12-03 01:22:04,841 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 18:22:36] 2025-12-03 01:22:04,843 | INFO     | ***************************************
[2025-12-02 18:22:36] 2025-12-03 01:22:04,843 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 18:22:36] 2025-12-03 01:22:04,843 | INFO     | ***************************************
[2025-12-02 18:22:36] 2025-12-03 01:22:04,843 | INFO     | 
[2025-12-02 18:22:36] 2025-12-03 01:22:04,845 | INFO     | architecture information:
[2025-12-02 18:22:36] 2025-12-03 01:22:04,845 | INFO     | executing command: cat /etc/os-release
[2025-12-02 18:22:36] 2025-12-03 01:22:04,856 | INFO     | cat /etc/os-release:
[2025-12-02 18:22:36] NAME="CentOS Linux"
[2025-12-02 18:22:36] VERSION="7 (Core)"
[2025-12-02 18:22:36] ID="centos"
[2025-12-02 18:22:36] ID_LIKE="rhel fedora"
[2025-12-02 18:22:36] VERSION_ID="7"
[2025-12-02 18:22:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 18:22:36] ANSI_COLOR="0;31"
[2025-12-02 18:22:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 18:22:36] HOME_URL="https://www.centos.org/"
[2025-12-02 18:22:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 18:22:36] 
[2025-12-02 18:22:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 18:22:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 18:22:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 18:22:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 18:22:36] 
[2025-12-02 18:22:36] 2025-12-03 01:22:04,857 | INFO     | ***************************************
[2025-12-02 18:22:36] 2025-12-03 01:22:05,359 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2025-12-02 18:22:36] 2025-12-03 01:22:05,372 | INFO     | sufficient remaining disk space (416394772480 B)
[2025-12-02 18:22:36] 2025-12-03 01:22:05,372 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 18:22:36] 2025-12-03 01:22:05,372 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 18:22:36] 2025-12-03 01:22:05,372 | INFO     | update_server=False
[2025-12-02 18:22:36] 2025-12-03 01:22:05,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 18:22:36] 2025-12-03 01:22:05,372 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 18:22:36] 2025-12-03 01:22:05,716 | INFO     | all payload control threads have been joined
[2025-12-02 18:22:36] 2025-12-03 01:22:05,853 | INFO     | all data control threads have been joined
[2025-12-02 18:22:36] 2025-12-03 01:22:05,884 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 18:22:36] 2025-12-03 01:22:06,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 18:22:36] 2025-12-03 01:22:06,198 | INFO     | aborting loop
[2025-12-02 18:22:36] 2025-12-03 01:22:06,373 | INFO     | [job] retrieve thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:06,377 | INFO     | [job] queue monitor thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:06,537 | INFO     | all job control threads have been joined
[2025-12-02 18:22:36] 2025-12-03 01:22:06,721 | INFO     | [payload] control thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:06,747 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 18:22:36] 2025-12-03 01:22:06,858 | INFO     | [data] control thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:06,982 | INFO     | [payload] validate_post thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:07,094 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:07,148 | INFO     | [payload] failed_post thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:07,203 | INFO     | [job] job monitor thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:07,514 | INFO     | [job] validate thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:07,530 | INFO     | [data] copytool_in thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:07,542 | INFO     | [job] control thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:07,590 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:07,611 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:07,866 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:07,889 | INFO     | [data] copytool_out thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:10,752 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 18:22:36] 2025-12-03 01:22:31,436 | INFO     | [monitor] cgroup control has ended
[2025-12-02 18:22:36] 2025-12-03 01:22:31,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136246894135104)>', '<ExcThread(monitor, started 136246395385600)>']
[2025-12-02 18:22:36] 2025-12-03 01:22:36,266 | INFO     | PID=2309302 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 18:22:36] 2025-12-03 01:22:36,266 | INFO     | .. there are 7 such processes running
[2025-12-02 18:22:36] 2025-12-03 01:22:36,266 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 18:22:36] 2025-12-03 01:22:36,266 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 18:22:36] 2025-12-03 01:22:36,266 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 18:22:36] 2025-12-03 01:22:36,266 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 18:22:36] 2025-12-03 01:22:36,266 | INFO     | [monitor] control thread has ended
[2025-12-02 18:22:36] 2025-12-03 01:22:36,538 | INFO     | all workflow threads have been joined
[2025-12-02 18:22:36] 2025-12-03 01:22:36,538 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 18:22:36] 2025-12-03 01:22:36,538 | INFO     | traces error code: 0
[2025-12-02 18:22:36] 2025-12-03 01:22:36,538 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 18:22:36] 2025-12-03 01:22:36,607 [wrapper] ==== pilot stdout END ====
[2025-12-02 18:22:36] 2025-12-03 01:22:36,609 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 18:22:36] 2025-12-03 01:22:36,611 [wrapper] pilotpid: 2309302
[2025-12-02 18:22:36] 2025-12-03 01:22:36,613 [wrapper] Pilot exit status: 0
[2025-12-02 18:22:36] 2025-12-03 01:22:36,619 [wrapper] pandaids: 6905025584
[2025-12-02 18:22:36] 2025-12-03 01:22:36,652 [wrapper] cleanup supervisor_pilot 2700405 2309303
[2025-12-02 18:22:36] 2025-12-03 01:22:36,654 [wrapper] Test setup, not cleaning
[2025-12-02 18:22:36] 2025-12-03 01:22:36,656 [wrapper] apfmon messages muted
[2025-12-02 18:22:36] 2025-12-03 01:22:36,658 [wrapper] ==== wrapper stdout END ====
[2025-12-02 18:22:36] 2025-12-03 01:22:36,660 [wrapper] ==== wrapper stderr END ====
[2025-12-02 18:22:36]  *** Error codes and diagnostics ***
[2025-12-02 18:22:36]     "exeErrorCode": 0,
[2025-12-02 18:22:36]     "exeErrorDiag": "",
[2025-12-02 18:22:36]     "pilotErrorCode": 0,
[2025-12-02 18:22:36]     "pilotErrorDiag": "",
[2025-12-02 18:22:36]  *** Listing of results directory ***
[2025-12-02 18:22:36] total 1076608
[2025-12-02 18:22:36] -rw-r--r-- 1 boinc boinc    576529 Nov 29 17:16 pilot3.tar.gz
[2025-12-02 18:22:36] -rwx------ 1 boinc boinc     36292 Nov 29 17:18 runpilot2-wrapper.sh
[2025-12-02 18:22:36] -rw-r--r-- 1 boinc boinc      5112 Nov 29 17:23 queuedata.json
[2025-12-02 18:22:36] -rw-r--r-- 1 boinc boinc       100 Dec  2 09:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 18:22:36] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 09:28 run_atlas
[2025-12-02 18:22:36] -rw-r--r-- 1 boinc boinc       105 Dec  2 09:28 job.xml
[2025-12-02 18:22:36] -rw-r--r-- 1 boinc boinc      9721 Dec  2 09:28 init_data.xml
[2025-12-02 18:22:36] -rw-r--r-- 2 boinc boinc 378378613 Dec  2 09:28 EVNT.47528871._000042.pool.root.1
[2025-12-02 18:22:36] -rw-r--r-- 2 boinc boinc     15847 Dec  2 09:28 start_atlas.sh
[2025-12-02 18:22:36] drwxrwx--x 2 boinc boinc      4096 Dec  2 09:28 shared
[2025-12-02 18:22:36] -rw-r--r-- 2 boinc boinc    590139 Dec  2 09:28 input.tar.gz
[2025-12-02 18:22:36] -rw-r--r-- 1 boinc boinc         0 Dec  2 09:28 boinc_lockfile
[2025-12-02 18:22:36] -rw-r--r-- 1 boinc boinc      2879 Dec  2 09:28 pandaJob.out
[2025-12-02 18:22:36] -rw------- 1 boinc boinc    988852 Dec  2 09:28 agis_schedconf.cvmfs.json
[2025-12-02 18:22:36] drwx------ 5 boinc boinc      4096 Dec  2 09:28 pilot3
[2025-12-02 18:22:36] -rw-r--r-- 1 boinc boinc       532 Dec  2 18:16 boinc_task_state.xml
[2025-12-02 18:22:36] -rw------- 1 boinc boinc 708033088 Dec  2 18:21 HITS.47538113._002014.pool.root.1
[2025-12-02 18:22:36] -rw------- 1 boinc boinc      1031 Dec  2 18:21 memory_monitor_summary.json
[2025-12-02 18:22:36] -rw------- 1 boinc boinc        95 Dec  2 18:21 pilot_heartbeat.json
[2025-12-02 18:22:36] -rw------- 1 boinc boinc   1516240 Dec  2 18:21 agis_ddmendpoints.agis.ALL.json
[2025-12-02 18:22:36] -rw------- 1 boinc boinc   1440859 Dec  2 18:21 log.47538113._002014.job.log.tgz.1
[2025-12-02 18:22:36] -rw------- 1 boinc boinc     26917 Dec  2 18:22 heartbeat.json
[2025-12-02 18:22:36] -rw-r--r-- 1 boinc boinc        29 Dec  2 18:22 wrapper_checkpoint.txt
[2025-12-02 18:22:36] -rw-r--r-- 1 boinc boinc      8192 Dec  2 18:22 boinc_mmap_file
[2025-12-02 18:22:36] -rw------- 1 boinc boinc      4831 Dec  2 18:22 pilotlog.txt
[2025-12-02 18:22:36] -rw------- 1 boinc boinc   4599579 Dec  2 18:22 log.47538113._002014.job.log.1
[2025-12-02 18:22:36] -rw------- 1 boinc boinc       353 Dec  2 18:22 output.list
[2025-12-02 18:22:36] -rw-r--r-- 1 boinc boinc       620 Dec  2 18:22 runtime_log
[2025-12-02 18:22:36] -rw------- 1 boinc boinc   6082560 Dec  2 18:22 result.tar.gz
[2025-12-02 18:22:36] -rw-r--r-- 1 boinc boinc      8920 Dec  2 18:22 runtime_log.err
[2025-12-02 18:22:36] -rw------- 1 boinc boinc       662 Dec  2 18:22 9tHMDmLKkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQMPKDmlkbc5n.diag
[2025-12-02 18:22:36] -rw-r--r-- 1 boinc boinc     21355 Dec  2 18:22 stderr.txt
[2025-12-02 18:22:36] HITS file was successfully produced:
[2025-12-02 18:22:36] -rw------- 1 boinc boinc 708033088 Dec  2 18:21 shared/HITS.pool.root.1
[2025-12-02 18:22:36]  *** Contents of shared directory: ***
[2025-12-02 18:22:36] total 1067496
[2025-12-02 18:22:36] -rw-r--r-- 2 boinc boinc 378378613 Dec  2 09:28 ATLAS.root_0
[2025-12-02 18:22:36] -rw-r--r-- 2 boinc boinc     15847 Dec  2 09:28 start_atlas.sh
[2025-12-02 18:22:36] -rw-r--r-- 2 boinc boinc    590139 Dec  2 09:28 input.tar.gz
[2025-12-02 18:22:36] -rw------- 1 boinc boinc 708033088 Dec  2 18:21 HITS.pool.root.1
[2025-12-02 18:22:36] -rw------- 1 boinc boinc   6082560 Dec  2 18:22 result.tar.gz
18:22:38 (2305443): run_atlas exited; CPU time 126904.680447
18:22:38 (2305443): called boinc_finish(0)

</stderr_txt>
]]>

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