Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
10:35:50 (946267): wrapper (7.7.26015): starting
10:35:50 (946267): wrapper: running run_atlas (--nthreads 4)
[2025-12-02 10:35:50] Arguments: --nthreads 4
[2025-12-02 10:35:50] Threads: 4
[2025-12-02 10:35:50] Checking for CVMFS
[2025-12-02 10:35:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 10:35:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 10:35:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 10:35:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 10:35:50] 2.13.2.0 774864 13135 67656 153564 2 103 3407615 4096000 5031 130560 0 38612157 99.959 1901340 1141 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-02 10:35:50] CVMFS is ok
[2025-12-02 10:35:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 10:35:50] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-02 10:35:50] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-02 10:35:50] Further information can be found at the LHC@home message board.
[2025-12-02 10:35:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 10:35:50] Checking for apptainer binary...
[2025-12-02 10:35:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 10:35:50] Running /usr/bin/apptainer --version
[2025-12-02 10:35:51] apptainer version 1.4.3
[2025-12-02 10:35:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 10:35:51] msi670e
[2025-12-02 10:35:51] apptainer works
[2025-12-02 10:35:51] Set ATHENA_PROC_NUMBER=4
[2025-12-02 10:35:51] Set ATHENA_CORE_NUMBER=4
[2025-12-02 10:35:51] Starting ATLAS job with PandaID=6895339659
[2025-12-02 10:35:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 17:13:43]  *** The last 200 lines of the pilot log: ***
[2025-12-02 17:13:43] 2025-12-03 00:13:00,422 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 17:13:43] 2025-12-03 00:13:01,298 | INFO     | time since job start (23824s) is within the limit (172800.0s)
[2025-12-02 17:13:43] 2025-12-03 00:13:01,764 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 17:13:43] 2025-12-03 00:13:01,766 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 5046.470718749999
[2025-12-02 17:13:43] 2025-12-03 00:13:01,769 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6895339659/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 17:13:43] 2025-12-03 00:13:01,769 | INFO     | extracted standard info from prmon json
[2025-12-02 17:13:43] 2025-12-03 00:13:01,769 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 17:13:43] 2025-12-03 00:13:01,769 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 17:13:43] 2025-12-03 00:13:01,772 | INFO     | fitting pss+swap vs Time
[2025-12-02 17:13:43] 2025-12-03 00:13:01,772 | INFO     | sum of square deviations: 18535566140.0
[2025-12-02 17:13:43] 2025-12-03 00:13:01,774 | INFO     | sum of deviations: 93886751026.0
[2025-12-02 17:13:43] 2025-12-03 00:13:01,774 | INFO     | mean x: 1764708871.0
[2025-12-02 17:13:43] 2025-12-03 00:13:01,774 | INFO     | mean y: 2259255.470588235
[2025-12-02 17:13:43] 2025-12-03 00:13:01,774 | INFO     | intersect: -8936382335.16337
[2025-12-02 17:13:43] 2025-12-03 00:13:01,774 | INFO     | chi2: 2.7413932436977
[2025-12-02 17:13:43] 2025-12-03 00:13:01,774 | INFO     | sum of square deviations: 17833534372.5
[2025-12-02 17:13:43] 2025-12-03 00:13:01,776 | INFO     | sum of deviations: 141923349903.5
[2025-12-02 17:13:43] 2025-12-03 00:13:01,776 | INFO     | mean x: 1764708718.5
[2025-12-02 17:13:43] 2025-12-03 00:13:01,776 | INFO     | mean y: 2269618.152849741
[2025-12-02 17:13:43] 2025-12-03 00:13:01,776 | INFO     | intersect: -14041686431.279583
[2025-12-02 17:13:43] 2025-12-03 00:13:01,776 | INFO     | chi2: 1.449517244373502
[2025-12-02 17:13:43] 2025-12-03 00:13:01,776 | INFO     | current chi2=1.449517244373502 (change=47.1247969365265 %)
[2025-12-02 17:13:43] 2025-12-03 00:13:01,776 | INFO     | sum of square deviations: 17149456430.0
[2025-12-02 17:13:43] 2025-12-03 00:13:01,778 | INFO     | sum of deviations: 138732140912.0
[2025-12-02 17:13:43] 2025-12-03 00:13:01,778 | INFO     | mean x: 1764708566.0
[2025-12-02 17:13:43] 2025-12-03 00:13:01,778 | INFO     | mean y: 2268906.6430446194
[2025-12-02 17:13:43] 2025-12-03 00:13:01,778 | INFO     | intersect: -14273507030.992634
[2025-12-02 17:13:43] 2025-12-03 00:13:01,778 | INFO     | chi2: 1.4492620713564899
[2025-12-02 17:13:43] 2025-12-03 00:13:01,778 | INFO     | current chi2=1.4492620713564899 (change=0.01760400009055812 %)
[2025-12-02 17:13:43] 2025-12-03 00:13:01,778 | INFO     | right removable region: 380
[2025-12-02 17:13:43] 2025-12-03 00:13:01,778 | INFO     | sum of square deviations: 17833534372.5
[2025-12-02 17:13:43] 2025-12-03 00:13:01,780 | INFO     | sum of deviations: 40876344000.00001
[2025-12-02 17:13:43] 2025-12-03 00:13:01,780 | INFO     | mean x: 1764709023.5
[2025-12-02 17:13:43] 2025-12-03 00:13:01,780 | INFO     | mean y: 2270696.766839378
[2025-12-02 17:13:43] 2025-12-03 00:13:01,780 | INFO     | intersect: -4042628738.0712056
[2025-12-02 17:13:43] 2025-12-03 00:13:01,780 | INFO     | chi2: 1.325399351785475
[2025-12-02 17:13:43] 2025-12-03 00:13:01,780 | INFO     | current chi2=1.325399351785475 (change=51.652344849375794 %)
[2025-12-02 17:13:43] 2025-12-03 00:13:01,780 | INFO     | sum of square deviations: 17149456430.0
[2025-12-02 17:13:43] 2025-12-03 00:13:01,782 | INFO     | sum of deviations: 39029014937.0
[2025-12-02 17:13:43] 2025-12-03 00:13:01,782 | INFO     | mean x: 1764709176.0
[2025-12-02 17:13:43] 2025-12-03 00:13:01,782 | INFO     | mean y: 2271110.31496063
[2025-12-02 17:13:43] 2025-12-03 00:13:01,782 | INFO     | intersect: -4013883050.0629935
[2025-12-02 17:13:43] 2025-12-03 00:13:01,782 | INFO     | chi2: 1.3249401305561581
[2025-12-02 17:13:43] 2025-12-03 00:13:01,782 | INFO     | current chi2=1.3249401305561581 (change=0.03464776323439617 %)
[2025-12-02 17:13:43] 2025-12-03 00:13:01,782 | INFO     | left removable region: 20
[2025-12-02 17:13:43] 2025-12-03 00:13:01,782 | INFO     | sum of square deviations: 14467136370.0
[2025-12-02 17:13:43] 2025-12-03 00:13:01,783 | INFO     | sum of deviations: 75629589374.00002
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | mean x: 1764709145.5
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | mean y: 2283174.988888889
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | intersect: -9223055179.840446
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | chi2: 0.016879528124618057
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | current memory leak: 5.23 B/s (using 360 data points, chi2=0.02)
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | could have reported an average CPU frequency of 4986 MHz (17 samples)
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | ..............................
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | . Timing measurements:
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | . get job = 0 s
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | . initial setup = 2 s
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | . payload setup = 2 s
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | . stage-in = 0 s
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | . payload execution = 23799 s
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | . stage-out = 2 s
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | . log creation = 0 s
[2025-12-02 17:13:43] 2025-12-03 00:13:01,784 | INFO     | ..............................
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | 
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | job summary report
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | --------------------------------------------------
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | PanDA job id: 6895339659
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | task id: 47556137
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | errors: (none)
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | pilot state: finished 
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | transexitcode: 0
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | exeerrorcode: 0
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | exeerrordiag: 
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | exitcode: 0
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | exitmsg: OK
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | cpuconsumptiontime: 94432 s
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | nevents: 1000
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | neventsw: 0
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | pid: 956789
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | pgrp: 956789
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | corecount: 4
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | event service: False
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | sizes: {0: 2284271, 2: 2284533, 11: 2284561, 23805: 2320771, 23808: 2329779, 23809: 2329835, 23811: 2330273}
[2025-12-02 17:13:43] 2025-12-03 00:13:02,086 | INFO     | --------------------------------------------------
[2025-12-02 17:13:43] 2025-12-03 00:13:02,087 | INFO     | 
[2025-12-02 17:13:43] 2025-12-03 00:13:02,087 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-12-02 17:13:43] 2025-12-03 00:13:02,099 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,099 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,099 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,099 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,099 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,099 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,099 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,099 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,099 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,100 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,100 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,100 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,100 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,100 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,100 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,100 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,100 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,100 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 17:13:43] 2025-12-03 00:13:02,100 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,100 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 17:13:43] 2025-12-03 00:13:02,100 | INFO     | job 6895339659 has completed (purged errors)
[2025-12-02 17:13:43] 2025-12-03 00:13:02,100 | INFO     | overall cleanup function is called
[2025-12-02 17:13:43] 2025-12-03 00:13:03,109 | INFO     | --- collectZombieJob: --- 10, [956789]
[2025-12-02 17:13:43] 2025-12-03 00:13:03,109 | INFO     | zombie collector waiting for pid 956789
[2025-12-02 17:13:43] 2025-12-03 00:13:03,109 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 17:13:43] 2025-12-03 00:13:03,109 | INFO     | collected zombie processes
[2025-12-02 17:13:43] 2025-12-03 00:13:03,109 | INFO     | will attempt to kill all subprocesses of pid=956789
[2025-12-02 17:13:43] 2025-12-03 00:13:03,191 | INFO     | process IDs to be killed: [956789] (in reverse order)
[2025-12-02 17:13:43] 2025-12-03 00:13:03,232 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 17:13:43] 2025-12-03 00:13:03,232 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 17:13:43] 2025-12-03 00:13:03,235 | INFO     | did not find any defunct processes belonging to 956789
[2025-12-02 17:13:43] 2025-12-03 00:13:03,237 | INFO     | did not find any defunct processes belonging to 956789
[2025-12-02 17:13:43] 2025-12-03 00:13:03,238 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 17:13:43] 2025-12-03 00:13:03,238 | INFO     | ready for new job
[2025-12-02 17:13:43] 2025-12-03 00:13:03,238 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 17:13:43] 2025-12-03 00:13:03,239 | INFO     | ***************************************
[2025-12-02 17:13:43] 2025-12-03 00:13:03,239 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 17:13:43] 2025-12-03 00:13:03,239 | INFO     | ***************************************
[2025-12-02 17:13:43] 2025-12-03 00:13:03,239 | INFO     | 
[2025-12-02 17:13:43] 2025-12-03 00:13:03,240 | INFO     | architecture information:
[2025-12-02 17:13:43] 2025-12-03 00:13:03,240 | INFO     | executing command: cat /etc/os-release
[2025-12-02 17:13:43] 2025-12-03 00:13:03,248 | INFO     | cat /etc/os-release:
[2025-12-02 17:13:43] NAME="CentOS Linux"
[2025-12-02 17:13:43] VERSION="7 (Core)"
[2025-12-02 17:13:43] ID="centos"
[2025-12-02 17:13:43] ID_LIKE="rhel fedora"
[2025-12-02 17:13:43] VERSION_ID="7"
[2025-12-02 17:13:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 17:13:43] ANSI_COLOR="0;31"
[2025-12-02 17:13:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 17:13:43] HOME_URL="https://www.centos.org/"
[2025-12-02 17:13:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 17:13:43] 
[2025-12-02 17:13:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 17:13:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 17:13:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 17:13:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 17:13:43] 
[2025-12-02 17:13:43] 2025-12-03 00:13:03,248 | INFO     | ***************************************
[2025-12-02 17:13:43] 2025-12-03 00:13:03,750 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-12-02 17:13:43] 2025-12-03 00:13:03,759 | INFO     | sufficient remaining disk space (437005582336 B)
[2025-12-02 17:13:43] 2025-12-03 00:13:03,760 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 17:13:43] 2025-12-03 00:13:03,760 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 17:13:43] 2025-12-03 00:13:03,760 | INFO     | update_server=False
[2025-12-02 17:13:43] 2025-12-03 00:13:03,760 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 17:13:43] 2025-12-03 00:13:03,760 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 17:13:43] 2025-12-03 00:13:03,930 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 17:13:43] 2025-12-03 00:13:03,930 | INFO     | aborting loop
[2025-12-02 17:13:43] 2025-12-03 00:13:04,662 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 17:13:43] 2025-12-03 00:13:04,718 | INFO     | all job control threads have been joined
[2025-12-02 17:13:43] 2025-12-03 00:13:04,764 | INFO     | [job] retrieve thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:04,765 | INFO     | [job] queue monitor thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:04,793 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:04,819 | INFO     | all data control threads have been joined
[2025-12-02 17:13:43] 2025-12-03 00:13:04,862 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:04,935 | INFO     | [job] job monitor thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:04,976 | INFO     | all payload control threads have been joined
[2025-12-02 17:13:43] 2025-12-03 00:13:05,257 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 17:13:43] 2025-12-03 00:13:05,378 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:05,600 | INFO     | [payload] failed_post thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:05,723 | INFO     | [job] control thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:05,824 | INFO     | [data] control thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:05,829 | INFO     | [data] copytool_in thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:05,981 | INFO     | [payload] control thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:06,107 | INFO     | [payload] validate_post thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:06,197 | INFO     | [job] validate thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:06,668 | INFO     | [data] copytool_out thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:09,262 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:14,301 | INFO     | job.realtimelogging is not enabled
[2025-12-02 17:13:43] 2025-12-03 00:13:15,306 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 17:13:43] 2025-12-03 00:13:34,460 | INFO     | PID=950127 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 17:13:43] 2025-12-03 00:13:34,460 | INFO     | .. there are 7 such processes running
[2025-12-02 17:13:43] 2025-12-03 00:13:34,460 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 17:13:43] 2025-12-03 00:13:34,460 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 17:13:43] 2025-12-03 00:13:34,460 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 17:13:43] 2025-12-03 00:13:36,587 | INFO     | [monitor] cgroup control has ended
[2025-12-02 17:13:43] 2025-12-03 00:13:38,027 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135566034466624)>', '<ExcThread(monitor, started 135565248808704)>']
[2025-12-02 17:13:43] 2025-12-03 00:13:38,480 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 17:13:43] 2025-12-03 00:13:38,480 | INFO     | [monitor] control thread has ended
[2025-12-02 17:13:43] 2025-12-03 00:13:43,051 | INFO     | all workflow threads have been joined
[2025-12-02 17:13:43] 2025-12-03 00:13:43,051 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 17:13:43] 2025-12-03 00:13:43,051 | INFO     | traces error code: 0
[2025-12-02 17:13:43] 2025-12-03 00:13:43,051 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 17:13:43] 2025-12-03 00:13:43,106 [wrapper] ==== pilot stdout END ====
[2025-12-02 17:13:43] 2025-12-03 00:13:43,108 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 17:13:43] 2025-12-03 00:13:43,110 [wrapper] pilotpid: 950127
[2025-12-02 17:13:43] 2025-12-03 00:13:43,111 [wrapper] Pilot exit status: 0
[2025-12-02 17:13:43] 2025-12-03 00:13:43,116 [wrapper] pandaids: 6895339659
[2025-12-02 17:13:43] 2025-12-03 00:13:43,140 [wrapper] cleanup supervisor_pilot 1343213 950128
[2025-12-02 17:13:43] 2025-12-03 00:13:43,141 [wrapper] Test setup, not cleaning
[2025-12-02 17:13:43] 2025-12-03 00:13:43,143 [wrapper] apfmon messages muted
[2025-12-02 17:13:43] 2025-12-03 00:13:43,144 [wrapper] ==== wrapper stdout END ====
[2025-12-02 17:13:43] 2025-12-03 00:13:43,146 [wrapper] ==== wrapper stderr END ====
[2025-12-02 17:13:43]  *** Error codes and diagnostics ***
[2025-12-02 17:13:43]     "exeErrorCode": 0,
[2025-12-02 17:13:43]     "exeErrorDiag": "",
[2025-12-02 17:13:43]     "pilotErrorCode": 0,
[2025-12-02 17:13:43]     "pilotErrorDiag": "",
[2025-12-02 17:13:43]  *** Listing of results directory ***
[2025-12-02 17:13:43] total 1310904
[2025-12-02 17:13:43] -rw-r--r-- 1 boinc boinc    576529 Nov 22 03:57 pilot3.tar.gz
[2025-12-02 17:13:43] -rwx------ 1 boinc boinc     36292 Nov 22 04:09 runpilot2-wrapper.sh
[2025-12-02 17:13:43] -rw-r--r-- 1 boinc boinc      5112 Nov 22 04:09 queuedata.json
[2025-12-02 17:13:43] -rw-r--r-- 1 boinc boinc       100 Dec  2 10:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 17:13:43] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 10:35 run_atlas
[2025-12-02 17:13:43] -rw-r--r-- 1 boinc boinc       105 Dec  2 10:35 job.xml
[2025-12-02 17:13:43] -rw-r--r-- 1 boinc boinc      9949 Dec  2 10:35 init_data.xml
[2025-12-02 17:13:43] -rw-r--r-- 2 boinc boinc 409841417 Dec  2 10:35 EVNT.47483658._000355.pool.root.1
[2025-12-02 17:13:43] -rw-r--r-- 2 boinc boinc     15847 Dec  2 10:35 start_atlas.sh
[2025-12-02 17:13:43] drwxrwx--x 2 boinc boinc      4096 Dec  2 10:35 shared
[2025-12-02 17:13:43] -rw-r--r-- 2 boinc boinc    590104 Dec  2 10:35 input.tar.gz
[2025-12-02 17:13:43] -rw-r--r-- 1 boinc boinc         0 Dec  2 10:35 boinc_lockfile
[2025-12-02 17:13:43] -rw-r--r-- 1 boinc boinc      2785 Dec  2 10:35 pandaJob.out
[2025-12-02 17:13:43] -rw------- 1 boinc boinc    988858 Dec  2 10:35 agis_schedconf.cvmfs.json
[2025-12-02 17:13:43] drwx------ 5 boinc boinc      4096 Dec  2 10:35 pilot3
[2025-12-02 17:13:43] -rw-r--r-- 1 boinc boinc       531 Dec  2 17:09 boinc_task_state.xml
[2025-12-02 17:13:43] -rw------- 1 boinc boinc 919243675 Dec  2 17:12 HITS.47556137._003516.pool.root.1
[2025-12-02 17:13:43] -rw------- 1 boinc boinc        95 Dec  2 17:12 pilot_heartbeat.json
[2025-12-02 17:13:43] -rw------- 1 boinc boinc      1032 Dec  2 17:12 memory_monitor_summary.json
[2025-12-02 17:13:43] -rw------- 1 boinc boinc   1516240 Dec  2 17:12 agis_ddmendpoints.agis.ALL.json
[2025-12-02 17:13:43] -rw------- 1 boinc boinc   1231732 Dec  2 17:12 log.47556137._003516.job.log.tgz.1
[2025-12-02 17:13:43] -rw------- 1 boinc boinc      8555 Dec  2 17:13 heartbeat.json
[2025-12-02 17:13:43] -rw-r--r-- 1 boinc boinc      8192 Dec  2 17:13 boinc_mmap_file
[2025-12-02 17:13:43] -rw-r--r-- 1 boinc boinc        28 Dec  2 17:13 wrapper_checkpoint.txt
[2025-12-02 17:13:43] -rw------- 1 boinc boinc      4902 Dec  2 17:13 pilotlog.txt
[2025-12-02 17:13:43] -rw------- 1 boinc boinc   3452233 Dec  2 17:13 log.47556137._003516.job.log.1
[2025-12-02 17:13:43] -rw------- 1 boinc boinc       353 Dec  2 17:13 output.list
[2025-12-02 17:13:43] -rw-r--r-- 1 boinc boinc       620 Dec  2 17:13 runtime_log
[2025-12-02 17:13:43] -rw------- 1 boinc boinc   4700160 Dec  2 17:13 result.tar.gz
[2025-12-02 17:13:43] -rw-r--r-- 1 boinc boinc      8920 Dec  2 17:13 runtime_log.err
[2025-12-02 17:13:43] -rw------- 1 boinc boinc       660 Dec  2 17:13 bk9KDmPf0g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmL8JKDmSxApnm.diag
[2025-12-02 17:13:43] -rw-r--r-- 1 boinc boinc     21289 Dec  2 17:13 stderr.txt
[2025-12-02 17:13:43] HITS file was successfully produced:
[2025-12-02 17:13:43] -rw------- 1 boinc boinc 919243675 Dec  2 17:12 shared/HITS.pool.root.1
[2025-12-02 17:13:43]  *** Contents of shared directory: ***
[2025-12-02 17:13:43] total 1303132
[2025-12-02 17:13:43] -rw-r--r-- 2 boinc boinc 409841417 Dec  2 10:35 ATLAS.root_0
[2025-12-02 17:13:43] -rw-r--r-- 2 boinc boinc     15847 Dec  2 10:35 start_atlas.sh
[2025-12-02 17:13:43] -rw-r--r-- 2 boinc boinc    590104 Dec  2 10:35 input.tar.gz
[2025-12-02 17:13:43] -rw------- 1 boinc boinc 919243675 Dec  2 17:12 HITS.pool.root.1
[2025-12-02 17:13:43] -rw------- 1 boinc boinc   4700160 Dec  2 17:13 result.tar.gz
17:13:44 (946267): run_atlas exited; CPU time 94402.818162
17:13:44 (946267): called boinc_finish(0)

</stderr_txt>
]]>

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