Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:17:11 (19691): wrapper (7.7.26015): starting
12:17:11 (19691): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 12:17:11] Arguments: --nthreads 8
[2025-12-02 12:17:11] Threads: 8
[2025-12-02 12:17:11] Checking for CVMFS
[2025-12-02 12:17:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 12:17:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 12:17:12] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 12:17:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 12:17:12] 2.11.2.0 2781 80538 81832 153564 0 67 14182599 20275200 1 130560 0 23725133 99.880 4575759 33990 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 12:17:12] CVMFS is ok
[2025-12-02 12:17:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 12:17:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 12:17:12] Further information can be found at the LHC@home message board.
[2025-12-02 12:17:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 12:17:12] Checking for apptainer binary...
[2025-12-02 12:17:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 12:17:12] Running /usr/bin/apptainer --version
[2025-12-02 12:17:12] apptainer version 1.3.2-1.el7
[2025-12-02 12:17:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 12:17:13] c-115-16.aglt2.org
[2025-12-02 12:17:13] apptainer works
[2025-12-02 12:17:13] Set ATHENA_PROC_NUMBER=8
[2025-12-02 12:17:13] Set ATHENA_CORE_NUMBER=8
[2025-12-02 12:17:13] Starting ATLAS job with PandaID=6905165326
[2025-12-02 12:17:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 21:57:34]  *** The last 200 lines of the pilot log: ***
[2025-12-02 21:57:34] 2025-12-03 02:57:00,032 | INFO     | PID=23532 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 21:57:34] 2025-12-03 02:57:00,791 | INFO     | monitor loop #2571: job 0:6905165326 is in state 'finished'
[2025-12-02 21:57:34] 2025-12-03 02:57:00,792 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 21:57:34] 2025-12-03 02:57:01,032 | INFO     | time since job start (34771s) is within the limit (172800.0s)
[2025-12-02 21:57:34] 2025-12-03 02:57:01,981 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-02 21:57:34] 2025-12-03 02:57:01,985 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-12-02 21:57:34] 2025-12-03 02:57:01,987 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6905165326/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 21:57:34] 2025-12-03 02:57:01,988 | INFO     | extracted standard info from prmon json
[2025-12-02 21:57:34] 2025-12-03 02:57:01,988 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 21:57:34] 2025-12-03 02:57:01,988 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 21:57:34] 2025-12-03 02:57:01,998 | INFO     | fitting pss+swap vs Time
[2025-12-02 21:57:34] 2025-12-03 02:57:01,999 | INFO     | sum of square deviations: 57425098031.40366
[2025-12-02 21:57:34] 2025-12-03 02:57:02,005 | INFO     | sum of deviations: 462163788511.8423
[2025-12-02 21:57:34] 2025-12-03 02:57:02,005 | INFO     | mean x: 1764713242.122807
[2025-12-02 21:57:34] 2025-12-03 02:57:02,005 | INFO     | mean y: 3638299.9736842103
[2025-12-02 21:57:34] 2025-12-03 02:57:02,006 | INFO     | intersect: -14198976681.553703
[2025-12-02 21:57:34] 2025-12-03 02:57:02,006 | INFO     | chi2: 6.022126662499982
[2025-12-02 21:57:34] 2025-12-03 02:57:02,007 | INFO     | sum of square deviations: 55927234031.946884
[2025-12-02 21:57:34] 2025-12-03 02:57:02,014 | INFO     | sum of deviations: 709265454748.0803
[2025-12-02 21:57:34] 2025-12-03 02:57:02,014 | INFO     | mean x: 1764713089.6283185
[2025-12-02 21:57:34] 2025-12-03 02:57:02,014 | INFO     | mean y: 3663435.757522124
[2025-12-02 21:57:34] 2025-12-03 02:57:02,014 | INFO     | intersect: -22376310358.407745
[2025-12-02 21:57:34] 2025-12-03 02:57:02,015 | INFO     | chi2: 2.6799186841453984
[2025-12-02 21:57:34] 2025-12-03 02:57:02,015 | INFO     | current chi2=2.6799186841453984 (change=55.49879910641275 %)
[2025-12-02 21:57:34] 2025-12-03 02:57:02,016 | INFO     | sum of square deviations: 54455649594.95541
[2025-12-02 21:57:34] 2025-12-03 02:57:02,022 | INFO     | sum of deviations: 736808724382.0353
[2025-12-02 21:57:34] 2025-12-03 02:57:02,022 | INFO     | mean x: 1764712937.1339285
[2025-12-02 21:57:34] 2025-12-03 02:57:02,022 | INFO     | mean y: 3666279.492857143
[2025-12-02 21:57:34] 2025-12-03 02:57:02,023 | INFO     | intersect: -23873670558.49385
[2025-12-02 21:57:34] 2025-12-03 02:57:02,023 | INFO     | chi2: 2.5693552681682976
[2025-12-02 21:57:34] 2025-12-03 02:57:02,023 | INFO     | current chi2=2.5693552681682976 (change=4.125625774811835 %)
[2025-12-02 21:57:34] 2025-12-03 02:57:02,023 | INFO     | right removable region: 559
[2025-12-02 21:57:34] 2025-12-03 02:57:02,024 | INFO     | sum of square deviations: 55927017481.946915
[2025-12-02 21:57:34] 2025-12-03 02:57:02,031 | INFO     | sum of deviations: 256626167021.5841
[2025-12-02 21:57:34] 2025-12-03 02:57:02,031 | INFO     | mean x: 1764713394.6283185
[2025-12-02 21:57:34] 2025-12-03 02:57:02,031 | INFO     | mean y: 3659179.888495575
[2025-12-02 21:57:34] 2025-12-03 02:57:02,031 | INFO     | intersect: -8093887493.350413
[2025-12-02 21:57:34] 2025-12-03 02:57:02,032 | INFO     | chi2: 3.5621099692182643
[2025-12-02 21:57:34] 2025-12-03 02:57:02,032 | INFO     | current chi2=3.5621099692182643 (change=40.8496338776854 %)
[2025-12-02 21:57:34] 2025-12-03 02:57:02,033 | INFO     | sum of square deviations: 54455250960.22136
[2025-12-02 21:57:34] 2025-12-03 02:57:02,039 | INFO     | sum of deviations: 224455761614.71448
[2025-12-02 21:57:34] 2025-12-03 02:57:02,039 | INFO     | mean x: 1764713547.1321428
[2025-12-02 21:57:34] 2025-12-03 02:57:02,040 | INFO     | mean y: 3662510.0714285714
[2025-12-02 21:57:34] 2025-12-03 02:57:02,040 | INFO     | intersect: -7270202108.470021
[2025-12-02 21:57:34] 2025-12-03 02:57:02,041 | INFO     | chi2: 3.534687447916128
[2025-12-02 21:57:34] 2025-12-03 02:57:02,041 | INFO     | current chi2=3.534687447916128 (change=0.769839267712285 %)
[2025-12-02 21:57:34] 2025-12-03 02:57:02,041 | INFO     | left removable region: 20
[2025-12-02 21:57:34] 2025-12-03 02:57:02,042 | INFO     | sum of square deviations: 48555987069.02431
[2025-12-02 21:57:34] 2025-12-03 02:57:02,048 | INFO     | sum of deviations: 459776993792.77545
[2025-12-02 21:57:34] 2025-12-03 02:57:02,048 | INFO     | mean x: 1764713516.6474953
[2025-12-02 21:57:34] 2025-12-03 02:57:02,048 | INFO     | mean y: 3695238.2040816327
[2025-12-02 21:57:34] 2025-12-03 02:57:02,048 | INFO     | intersect: -16706389852.56465
[2025-12-02 21:57:34] 2025-12-03 02:57:02,049 | INFO     | chi2: 0.03210576534982997
[2025-12-02 21:57:34] 2025-12-03 02:57:02,049 | INFO     | current memory leak: 9.47 B/s (using 539 data points, chi2=0.03)
[2025-12-02 21:57:34] 2025-12-03 02:57:02,049 | INFO     | could have reported an average CPU frequency of 2347 MHz (23 samples)
[2025-12-02 21:57:34] 2025-12-03 02:57:02,050 | INFO     | ..............................
[2025-12-02 21:57:34] 2025-12-03 02:57:02,050 | INFO     | . Timing measurements:
[2025-12-02 21:57:34] 2025-12-03 02:57:02,050 | INFO     | . get job = 0 s
[2025-12-02 21:57:34] 2025-12-03 02:57:02,050 | INFO     | . initial setup = 2 s
[2025-12-02 21:57:34] 2025-12-03 02:57:02,050 | INFO     | . payload setup = 14 s
[2025-12-02 21:57:34] 2025-12-03 02:57:02,050 | INFO     | . stage-in = 0 s
[2025-12-02 21:57:34] 2025-12-03 02:57:02,050 | INFO     | . payload execution = 34722 s
[2025-12-02 21:57:34] 2025-12-03 02:57:02,050 | INFO     | . stage-out = 3 s
[2025-12-02 21:57:34] 2025-12-03 02:57:02,051 | INFO     | . log creation = 0 s
[2025-12-02 21:57:34] 2025-12-03 02:57:02,051 | INFO     | ..............................
[2025-12-02 21:57:34] 2025-12-03 02:57:02,139 | INFO     | 
[2025-12-02 21:57:34] 2025-12-03 02:57:02,139 | INFO     | job summary report
[2025-12-02 21:57:34] 2025-12-03 02:57:02,139 | INFO     | --------------------------------------------------
[2025-12-02 21:57:34] 2025-12-03 02:57:02,139 | INFO     | PanDA job id: 6905165326
[2025-12-02 21:57:34] 2025-12-03 02:57:02,140 | INFO     | task id: 47530725
[2025-12-02 21:57:34] 2025-12-03 02:57:02,140 | INFO     | errors: (none)
[2025-12-02 21:57:34] 2025-12-03 02:57:02,140 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 21:57:34] 2025-12-03 02:57:02,140 | INFO     | pilot state: finished 
[2025-12-02 21:57:34] 2025-12-03 02:57:02,140 | INFO     | transexitcode: 0
[2025-12-02 21:57:34] 2025-12-03 02:57:02,141 | INFO     | exeerrorcode: 0
[2025-12-02 21:57:34] 2025-12-03 02:57:02,141 | INFO     | exeerrordiag: 
[2025-12-02 21:57:34] 2025-12-03 02:57:02,141 | INFO     | exitcode: 0
[2025-12-02 21:57:34] 2025-12-03 02:57:02,141 | INFO     | exitmsg: OK
[2025-12-02 21:57:34] 2025-12-03 02:57:02,141 | INFO     | cpuconsumptiontime: 269598 s
[2025-12-02 21:57:34] 2025-12-03 02:57:02,141 | INFO     | nevents: 1000
[2025-12-02 21:57:34] 2025-12-03 02:57:02,142 | INFO     | neventsw: 0
[2025-12-02 21:57:34] 2025-12-03 02:57:02,142 | INFO     | pid: 30743
[2025-12-02 21:57:34] 2025-12-03 02:57:02,142 | INFO     | pgrp: 30743
[2025-12-02 21:57:34] 2025-12-03 02:57:02,142 | INFO     | corecount: 8
[2025-12-02 21:57:34] 2025-12-03 02:57:02,142 | INFO     | event service: False
[2025-12-02 21:57:34] 2025-12-03 02:57:02,142 | INFO     | sizes: {0: 2284395, 6: 2284657, 11: 2284685, 34740: 2345462, 34744: 2354456, 34746: 2354512, 34754: 2354886}
[2025-12-02 21:57:34] 2025-12-03 02:57:02,143 | INFO     | --------------------------------------------------
[2025-12-02 21:57:34] 2025-12-03 02:57:02,143 | INFO     | 
[2025-12-02 21:57:34] 2025-12-03 02:57:02,143 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-02 21:57:34] 2025-12-03 02:57:02,170 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,171 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,171 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,171 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,171 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,172 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,172 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,172 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,172 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,173 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,173 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,173 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,173 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,173 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,173 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,174 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 21:57:34] 2025-12-03 02:57:02,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,174 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 21:57:34] 2025-12-03 02:57:02,175 | INFO     | job 6905165326 has completed (purged errors)
[2025-12-02 21:57:34] 2025-12-03 02:57:02,175 | INFO     | overall cleanup function is called
[2025-12-02 21:57:34] 2025-12-03 02:57:03,190 | INFO     | --- collectZombieJob: --- 10, [30743]
[2025-12-02 21:57:34] 2025-12-03 02:57:03,191 | INFO     | zombie collector waiting for pid 30743
[2025-12-02 21:57:34] 2025-12-03 02:57:03,191 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 21:57:34] 2025-12-03 02:57:03,191 | INFO     | collected zombie processes
[2025-12-02 21:57:34] 2025-12-03 02:57:03,191 | INFO     | will attempt to kill all subprocesses of pid=30743
[2025-12-02 21:57:34] 2025-12-03 02:57:03,276 | INFO     | process IDs to be killed: [30743] (in reverse order)
[2025-12-02 21:57:34] 2025-12-03 02:57:03,331 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 21:57:34] 2025-12-03 02:57:03,331 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 21:57:34] 2025-12-03 02:57:03,336 | INFO     | did not find any defunct processes belonging to 30743
[2025-12-02 21:57:34] 2025-12-03 02:57:03,339 | INFO     | did not find any defunct processes belonging to 30743
[2025-12-02 21:57:34] 2025-12-03 02:57:03,341 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 21:57:34] 2025-12-03 02:57:03,341 | INFO     | ready for new job
[2025-12-02 21:57:34] 2025-12-03 02:57:03,341 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 21:57:34] 2025-12-03 02:57:03,344 | INFO     | ***************************************
[2025-12-02 21:57:34] 2025-12-03 02:57:03,344 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 21:57:34] 2025-12-03 02:57:03,344 | INFO     | ***************************************
[2025-12-02 21:57:34] 2025-12-03 02:57:03,344 | INFO     | 
[2025-12-02 21:57:34] 2025-12-03 02:57:03,344 | INFO     | architecture information:
[2025-12-02 21:57:34] 2025-12-03 02:57:03,345 | INFO     | executing command: cat /etc/os-release
[2025-12-02 21:57:34] 2025-12-03 02:57:03,363 | INFO     | cat /etc/os-release:
[2025-12-02 21:57:34] NAME="CentOS Linux"
[2025-12-02 21:57:34] VERSION="7 (Core)"
[2025-12-02 21:57:34] ID="centos"
[2025-12-02 21:57:34] ID_LIKE="rhel fedora"
[2025-12-02 21:57:34] VERSION_ID="7"
[2025-12-02 21:57:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 21:57:34] ANSI_COLOR="0;31"
[2025-12-02 21:57:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 21:57:34] HOME_URL="https://www.centos.org/"
[2025-12-02 21:57:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 21:57:34] 
[2025-12-02 21:57:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 21:57:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 21:57:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 21:57:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 21:57:34] 
[2025-12-02 21:57:34] 2025-12-03 02:57:03,364 | INFO     | ***************************************
[2025-12-02 21:57:34] 2025-12-03 02:57:03,867 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-02 21:57:34] 2025-12-03 02:57:03,887 | INFO     | sufficient remaining disk space (17748197376 B)
[2025-12-02 21:57:34] 2025-12-03 02:57:03,887 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 21:57:34] 2025-12-03 02:57:03,887 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 21:57:34] 2025-12-03 02:57:03,888 | INFO     | update_server=False
[2025-12-02 21:57:34] 2025-12-03 02:57:03,888 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 21:57:34] 2025-12-03 02:57:03,888 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 21:57:34] 2025-12-03 02:57:04,131 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 21:57:34] 2025-12-03 02:57:04,304 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 21:57:34] 2025-12-03 02:57:04,305 | INFO     | aborting loop
[2025-12-02 21:57:34] 2025-12-03 02:57:04,680 | INFO     | all payload control threads have been joined
[2025-12-02 21:57:34] 2025-12-03 02:57:04,707 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 21:57:34] 2025-12-03 02:57:04,710 | INFO     | all data control threads have been joined
[2025-12-02 21:57:34] 2025-12-03 02:57:04,891 | INFO     | [job] queue monitor thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:04,894 | INFO     | [job] retrieve thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:05,108 | INFO     | [payload] validate_post thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:05,122 | INFO     | [payload] failed_post thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:05,251 | INFO     | all job control threads have been joined
[2025-12-02 21:57:34] 2025-12-03 02:57:05,310 | INFO     | [job] job monitor thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:05,338 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:05,568 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:05,624 | INFO     | [data] copytool_in thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:05,625 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:05,686 | INFO     | [payload] control thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:05,716 | INFO     | [data] control thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:05,912 | INFO     | [job] validate thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:05,921 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:06,257 | INFO     | [job] control thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:06,712 | INFO     | [data] copytool_out thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:08,138 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 21:57:34] 2025-12-03 02:57:27,532 | INFO     | [monitor] cgroup control has ended
[2025-12-02 21:57:34] 2025-12-03 02:57:27,693 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140240352220992)>', '<ExcThread(monitor, started 140239322470144)>']
[2025-12-02 21:57:34] 2025-12-03 02:57:32,718 | INFO     | all workflow threads have been joined
[2025-12-02 21:57:34] 2025-12-03 02:57:32,718 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 21:57:34] 2025-12-03 02:57:32,719 | INFO     | traces error code: 0
[2025-12-02 21:57:34] 2025-12-03 02:57:32,720 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 21:57:34] 2025-12-03 02:57:34,236 | INFO     | PID=23532 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 21:57:34] 2025-12-03 02:57:34,237 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 21:57:34] 2025-12-03 02:57:34,237 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 21:57:34] 2025-12-03 02:57:34,237 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 21:57:34] 2025-12-03 02:57:34,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 21:57:34] 2025-12-03 02:57:34,237 | INFO     | [monitor] control thread has ended
[2025-12-02 21:57:34] 2025-12-03 02:57:34,347 [wrapper] ==== pilot stdout END ====
[2025-12-02 21:57:34] 2025-12-03 02:57:34,352 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 21:57:34] 2025-12-03 02:57:34,357 [wrapper] pilotpid: 23532
[2025-12-02 21:57:34] 2025-12-03 02:57:34,362 [wrapper] Pilot exit status: 0
[2025-12-02 21:57:34] 2025-12-03 02:57:34,379 [wrapper] pandaids: 6905165326
[2025-12-02 21:57:34] 2025-12-03 02:57:34,423 [wrapper] cleanup supervisor_pilot  7078 23533
[2025-12-02 21:57:34] 2025-12-03 02:57:34,429 [wrapper] Test setup, not cleaning
[2025-12-02 21:57:34] 2025-12-03 02:57:34,434 [wrapper] apfmon messages muted
[2025-12-02 21:57:34] 2025-12-03 02:57:34,438 [wrapper] ==== wrapper stdout END ====
[2025-12-02 21:57:34] 2025-12-03 02:57:34,443 [wrapper] ==== wrapper stderr END ====
[2025-12-02 21:57:34]  *** Error codes and diagnostics ***
[2025-12-02 21:57:34]     "exeErrorCode": 0,
[2025-12-02 21:57:34]     "exeErrorDiag": "",
[2025-12-02 21:57:34]     "pilotErrorCode": 0,
[2025-12-02 21:57:34]     "pilotErrorDiag": "",
[2025-12-02 21:57:34]  *** Listing of results directory ***
[2025-12-02 21:57:34] total 1073960
[2025-12-02 21:57:34] -rw-r--r-- 1 boincer umatlas    576529 Nov 29 19:16 pilot3.tar.gz
[2025-12-02 21:57:34] -rwx------ 1 boincer umatlas     36292 Nov 29 19:18 runpilot2-wrapper.sh
[2025-12-02 21:57:34] -rw-r--r-- 1 boincer umatlas      5112 Nov 29 19:18 queuedata.json
[2025-12-02 21:57:34] -rw-r--r-- 1 boincer umatlas       100 Dec  2 12:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 21:57:34] -rwxr-xr-x 1 boincer umatlas      7986 Dec  2 12:17 run_atlas
[2025-12-02 21:57:34] -rw-r--r-- 1 boincer umatlas       105 Dec  2 12:17 job.xml
[2025-12-02 21:57:34] -rw-r--r-- 2 boincer umatlas 378119328 Dec  2 12:17 EVNT.47530720._000002.pool.root.1
[2025-12-02 21:57:34] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 12:17 start_atlas.sh
[2025-12-02 21:57:34] drwxrwx--x 2 boincer umatlas      4096 Dec  2 12:17 shared
[2025-12-02 21:57:34] -rw-r--r-- 2 boincer umatlas    590130 Dec  2 12:17 input.tar.gz
[2025-12-02 21:57:34] -rw-r--r-- 1 boincer umatlas         0 Dec  2 12:17 boinc_lockfile
[2025-12-02 21:57:34] -rw-r--r-- 1 boincer umatlas      2876 Dec  2 12:17 pandaJob.out
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas        57 Dec  2 12:17 setup.sh.local
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas    988858 Dec  2 12:17 agis_schedconf.cvmfs.json
[2025-12-02 21:57:34] drwx------ 5 boincer umatlas      4096 Dec  2 12:17 pilot3
[2025-12-02 21:57:34] -rw-r--r-- 1 boincer umatlas       533 Dec  2 21:47 boinc_task_state.xml
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas 704167074 Dec  2 21:56 HITS.47530725._001457.pool.root.1
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas        95 Dec  2 21:56 pilot_heartbeat.json
[2025-12-02 21:57:34] -rw-r--r-- 1 boincer umatlas      5913 Dec  2 21:56 init_data.xml
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas      1063 Dec  2 21:56 memory_monitor_summary.json
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas   1516240 Dec  2 21:56 agis_ddmendpoints.agis.ALL.json
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas   1942211 Dec  2 21:56 log.47530725._001457.job.log.tgz.1
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas     28356 Dec  2 21:57 heartbeat.json
[2025-12-02 21:57:34] -rw-r--r-- 1 boincer umatlas        29 Dec  2 21:57 wrapper_checkpoint.txt
[2025-12-02 21:57:34] -rw-r--r-- 1 boincer umatlas      8192 Dec  2 21:57 boinc_mmap_file
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas       745 Dec  2 21:57 pilotlog.txt
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas   4807718 Dec  2 21:57 log.47530725._001457.job.log.1
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas       353 Dec  2 21:57 output.list
[2025-12-02 21:57:34] -rw-r--r-- 1 boincer umatlas       620 Dec  2 21:57 runtime_log
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas   6789120 Dec  2 21:57 result.tar.gz
[2025-12-02 21:57:34] -rw-r--r-- 1 boincer umatlas      9343 Dec  2 21:57 runtime_log.err
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas       668 Dec  2 21:57 gGsNDmlJkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXyLKDmhswNum.diag
[2025-12-02 21:57:34] -rw-r--r-- 1 boincer umatlas     21402 Dec  2 21:57 stderr.txt
[2025-12-02 21:57:34] HITS file was successfully produced:
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas 704167074 Dec  2 21:56 shared/HITS.pool.root.1
[2025-12-02 21:57:34]  *** Contents of shared directory: ***
[2025-12-02 21:57:34] total 1064156
[2025-12-02 21:57:34] -rw-r--r-- 2 boincer umatlas 378119328 Dec  2 12:17 ATLAS.root_0
[2025-12-02 21:57:34] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 12:17 start_atlas.sh
[2025-12-02 21:57:34] -rw-r--r-- 2 boincer umatlas    590130 Dec  2 12:17 input.tar.gz
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas 704167074 Dec  2 21:56 HITS.pool.root.1
[2025-12-02 21:57:34] -rw------- 1 boincer umatlas   6789120 Dec  2 21:57 result.tar.gz
21:57:36 (19691): run_atlas exited; CPU time 267590.104018
21:57:36 (19691): called boinc_finish(0)

</stderr_txt>
]]>

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