Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:35 (1932561): wrapper (7.7.26015): starting
00:02:35 (1932561): wrapper: running run_atlas (--nthreads 9)
[2025-12-03 00:02:35] Arguments: --nthreads 9
[2025-12-03 00:02:35] Threads: 9
[2025-12-03 00:02:35] Checking for CVMFS
[2025-12-03 00:02:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:02:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:02:37] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:02:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:02:38] 2.13.2.0 6867 43476 267052 153581 3 195 26872402 40960001 10185 16776704 0 43277533 99.647 44010751 34194 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-03 00:02:38] CVMFS is ok
[2025-12-03 00:02:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:02:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:02:38] Further information can be found at the LHC@home message board.
[2025-12-03 00:02:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:02:38] Checking for apptainer binary...
[2025-12-03 00:02:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 00:02:38] Running /usr/bin/apptainer --version
[2025-12-03 00:02:38] apptainer version 1.4.4-1.el9
[2025-12-03 00:02:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:02:40] c-211-11.aglt2.org
[2025-12-03 00:02:40] apptainer works
[2025-12-03 00:02:40] Set ATHENA_PROC_NUMBER=9
[2025-12-03 00:02:40] Set ATHENA_CORE_NUMBER=9
[2025-12-03 00:02:40] Starting ATLAS job with PandaID=6897782753
[2025-12-03 00:02:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-04 03:44:55]  *** The last 200 lines of the pilot log: ***
[2025-12-04 03:44:55] 2025-12-04 08:43:47,063 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2568.7281249999996
[2025-12-04 03:44:55] 2025-12-04 08:43:47,071 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897782753/memory_monitor_summary.json (trf name=prmon)
[2025-12-04 03:44:55] 2025-12-04 08:43:47,071 | INFO     | extracted standard info from prmon json
[2025-12-04 03:44:55] 2025-12-04 08:43:47,072 | INFO     | extracted standard memory fields from prmon json
[2025-12-04 03:44:55] 2025-12-04 08:43:47,072 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-04 03:44:55] 2025-12-04 08:43:47,098 | INFO     | fitting pss+swap vs Time
[2025-12-04 03:44:55] 2025-12-04 08:43:47,100 | INFO     | sum of square deviations: 1340456588748.6968
[2025-12-04 03:44:55] 2025-12-04 08:43:47,165 | INFO     | sum of deviations: 9324639364515.932
[2025-12-04 03:44:55] 2025-12-04 08:43:47,165 | INFO     | mean x: 1764788147.2062614
[2025-12-04 03:44:55] 2025-12-04 08:43:47,166 | INFO     | mean y: 3616468.6341313687
[2025-12-04 03:44:55] 2025-12-04 08:43:47,166 | INFO     | intersect: -12272807225.796862
[2025-12-04 03:44:55] 2025-12-04 08:43:47,168 | INFO     | chi2: 12.980193438784422
[2025-12-04 03:44:55] 2025-12-04 08:43:47,170 | INFO     | sum of square deviations: 1328155765170.9446
[2025-12-04 03:44:55] 2025-12-04 08:43:47,236 | INFO     | sum of deviations: 10002653678895.691
[2025-12-04 03:44:55] 2025-12-04 08:43:47,236 | INFO     | mean x: 1764787994.731527
[2025-12-04 03:44:55] 2025-12-04 08:43:47,236 | INFO     | mean y: 3624872.7561576352
[2025-12-04 03:44:55] 2025-12-04 08:43:47,236 | INFO     | intersect: -13287408898.196325
[2025-12-04 03:44:55] 2025-12-04 08:43:47,238 | INFO     | chi2: 9.939231900879962
[2025-12-04 03:44:55] 2025-12-04 08:43:47,238 | INFO     | current chi2=9.939231900879962 (change=23.427705852350087 %)
[2025-12-04 03:44:55] 2025-12-04 08:43:47,239 | INFO     | right removable region: 1623
[2025-12-04 03:44:55] 2025-12-04 08:43:47,240 | INFO     | sum of square deviations: 1328147610690.9456
[2025-12-04 03:44:55] 2025-12-04 08:43:47,252 | INFO     | monitor loop #5727: job 0:6897782753 is in state 'finished'
[2025-12-04 03:44:55] 2025-12-04 08:43:47,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-04 03:44:55] 2025-12-04 08:43:47,306 | INFO     | sum of deviations: 8477856161352.011
[2025-12-04 03:44:55] 2025-12-04 08:43:47,307 | INFO     | mean x: 1764788299.731527
[2025-12-04 03:44:55] 2025-12-04 08:43:47,307 | INFO     | mean y: 3626960.5412561577
[2025-12-04 03:44:55] 2025-12-04 08:43:47,307 | INFO     | intersect: -11261402046.721985
[2025-12-04 03:44:55] 2025-12-04 08:43:47,309 | INFO     | chi2: 8.505627741836033
[2025-12-04 03:44:55] 2025-12-04 08:43:47,309 | INFO     | current chi2=8.505627741836033 (change=34.4722574286029 %)
[2025-12-04 03:44:55] 2025-12-04 08:43:47,311 | INFO     | sum of square deviations: 1315914168931.1123
[2025-12-04 03:44:55] 2025-12-04 08:43:47,376 | INFO     | sum of deviations: 7741982282200.762
[2025-12-04 03:44:55] 2025-12-04 08:43:47,377 | INFO     | mean x: 1764788452.2569487
[2025-12-04 03:44:55] 2025-12-04 08:43:47,377 | INFO     | mean y: 3636135.7986411364
[2025-12-04 03:44:55] 2025-12-04 08:43:47,377 | INFO     | intersect: -10379230202.895714
[2025-12-04 03:44:55] 2025-12-04 08:43:47,379 | INFO     | chi2: 5.268885927740707
[2025-12-04 03:44:55] 2025-12-04 08:43:47,379 | INFO     | current chi2=5.268885927740707 (change=38.05412031113226 %)
[2025-12-04 03:44:55] 2025-12-04 08:43:47,382 | INFO     | sum of square deviations: 1303756326740.357
[2025-12-04 03:44:55] 2025-12-04 08:43:47,446 | INFO     | sum of deviations: 7331443483174.036
[2025-12-04 03:44:55] 2025-12-04 08:43:47,446 | INFO     | mean x: 1764788604.7806692
[2025-12-04 03:44:55] 2025-12-04 08:43:47,446 | INFO     | mean y: 3641281.635687732
[2025-12-04 03:44:55] 2025-12-04 08:43:47,446 | INFO     | intersect: -9920335806.97232
[2025-12-04 03:44:55] 2025-12-04 08:43:47,448 | INFO     | chi2: 4.113652701706685
[2025-12-04 03:44:55] 2025-12-04 08:43:47,448 | INFO     | current chi2=4.113652701706685 (change=21.9255691217704 %)
[2025-12-04 03:44:55] 2025-12-04 08:43:47,448 | INFO     | left removable region: 30
[2025-12-04 03:44:55] 2025-12-04 08:43:47,450 | INFO     | sum of square deviations: 1253528102994.9946
[2025-12-04 03:44:55] 2025-12-04 08:43:47,513 | INFO     | sum of deviations: 7740670910640.084
[2025-12-04 03:44:55] 2025-12-04 08:43:47,513 | INFO     | mean x: 1764788879.33145
[2025-12-04 03:44:55] 2025-12-04 08:43:47,513 | INFO     | mean y: 3655135.6986817326
[2025-12-04 03:44:55] 2025-12-04 08:43:47,513 | INFO     | intersect: -10894106078.448278
[2025-12-04 03:44:55] 2025-12-04 08:43:47,515 | INFO     | chi2: 0.7705283678695279
[2025-12-04 03:44:55] 2025-12-04 08:43:47,515 | INFO     | current memory leak: 6.18 B/s (using 1593 data points, chi2=0.77)
[2025-12-04 03:44:55] 2025-12-04 08:43:47,517 | INFO     | could have reported an average CPU frequency of 2485 MHz (57 samples)
[2025-12-04 03:44:55] 2025-12-04 08:43:47,517 | INFO     | ..............................
[2025-12-04 03:44:55] 2025-12-04 08:43:47,517 | INFO     | . Timing measurements:
[2025-12-04 03:44:55] 2025-12-04 08:43:47,517 | INFO     | . get job = 1 s
[2025-12-04 03:44:55] 2025-12-04 08:43:47,518 | INFO     | . initial setup = 14 s
[2025-12-04 03:44:55] 2025-12-04 08:43:47,518 | INFO     | . payload setup = 89 s
[2025-12-04 03:44:55] 2025-12-04 08:43:47,518 | INFO     | . stage-in = 1 s
[2025-12-04 03:44:55] 2025-12-04 08:43:47,518 | INFO     | . payload execution = 99355 s
[2025-12-04 03:44:55] 2025-12-04 08:43:47,518 | INFO     | . stage-out = 4 s
[2025-12-04 03:44:55] 2025-12-04 08:43:47,518 | INFO     | . log creation = 1 s
[2025-12-04 03:44:55] 2025-12-04 08:43:47,518 | INFO     | ..............................
[2025-12-04 03:44:55] 2025-12-04 08:43:47,691 | INFO     | 
[2025-12-04 03:44:55] 2025-12-04 08:43:47,691 | INFO     | job summary report
[2025-12-04 03:44:55] 2025-12-04 08:43:47,691 | INFO     | --------------------------------------------------
[2025-12-04 03:44:55] 2025-12-04 08:43:47,691 | INFO     | PanDA job id: 6897782753
[2025-12-04 03:44:55] 2025-12-04 08:43:47,692 | INFO     | task id: 47530783
[2025-12-04 03:44:55] 2025-12-04 08:43:47,692 | INFO     | errors: (none)
[2025-12-04 03:44:55] 2025-12-04 08:43:47,692 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-04 03:44:55] 2025-12-04 08:43:47,692 | INFO     | pilot state: finished 
[2025-12-04 03:44:55] 2025-12-04 08:43:47,692 | INFO     | transexitcode: 0
[2025-12-04 03:44:55] 2025-12-04 08:43:47,692 | INFO     | exeerrorcode: 0
[2025-12-04 03:44:55] 2025-12-04 08:43:47,692 | INFO     | exeerrordiag: 
[2025-12-04 03:44:55] 2025-12-04 08:43:47,692 | INFO     | exitcode: 0
[2025-12-04 03:44:55] 2025-12-04 08:43:47,693 | INFO     | exitmsg: OK
[2025-12-04 03:44:55] 2025-12-04 08:43:47,693 | INFO     | cpuconsumptiontime: 304396 s
[2025-12-04 03:44:55] 2025-12-04 08:43:47,693 | INFO     | nevents: 1000
[2025-12-04 03:44:55] 2025-12-04 08:43:47,693 | INFO     | neventsw: 0
[2025-12-04 03:44:55] 2025-12-04 08:43:47,693 | INFO     | pid: 1947441
[2025-12-04 03:44:55] 2025-12-04 08:43:47,693 | INFO     | pgrp: 1947441
[2025-12-04 03:44:55] 2025-12-04 08:43:47,693 | INFO     | corecount: 9
[2025-12-04 03:44:55] 2025-12-04 08:43:47,694 | INFO     | event service: False
[2025-12-04 03:44:55] 2025-12-04 08:43:47,694 | INFO     | sizes: {0: 2284222, 1: 2284278, 2: 2284306, 3: 2284533, 14: 2284533, 27: 2284561, 38: 2284717, 48: 2285007, 49: 2285035, 99448: 2373638, 99449: 2373637, 99453: 238
[2025-12-04 03:44:55] 2025-12-04 08:43:47,694 | INFO     | --------------------------------------------------
[2025-12-04 03:44:55] 2025-12-04 08:43:47,694 | INFO     | 
[2025-12-04 03:44:55] 2025-12-04 08:43:47,694 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-04 03:44:55] 2025-12-04 08:43:47,717 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,717 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,717 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,718 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,718 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,718 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,718 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,718 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,718 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,718 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,719 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,719 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,719 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,719 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,720 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-04 03:44:55] 2025-12-04 08:43:47,720 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,720 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-04 03:44:55] 2025-12-04 08:43:47,720 | INFO     | job 6897782753 has completed (purged errors)
[2025-12-04 03:44:55] 2025-12-04 08:43:47,720 | INFO     | overall cleanup function is called
[2025-12-04 03:44:55] 2025-12-04 08:43:48,740 | INFO     | --- collectZombieJob: --- 10, [1947441]
[2025-12-04 03:44:55] 2025-12-04 08:43:48,741 | INFO     | zombie collector waiting for pid 1947441
[2025-12-04 03:44:55] 2025-12-04 08:43:48,741 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-04 03:44:55] 2025-12-04 08:43:48,741 | INFO     | collected zombie processes
[2025-12-04 03:44:55] 2025-12-04 08:43:48,741 | INFO     | will attempt to kill all subprocesses of pid=1947441
[2025-12-04 03:44:55] 2025-12-04 08:43:49,069 | INFO     | process IDs to be killed: [1947441] (in reverse order)
[2025-12-04 03:44:55] 2025-12-04 08:43:49,155 | WARNING  | found no corresponding commands to process id(s)
[2025-12-04 03:44:55] 2025-12-04 08:43:49,156 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-04 03:44:55] 2025-12-04 08:43:49,164 | INFO     | did not find any defunct processes belonging to 1947441
[2025-12-04 03:44:55] 2025-12-04 08:43:49,173 | INFO     | did not find any defunct processes belonging to 1947441
[2025-12-04 03:44:55] 2025-12-04 08:43:49,175 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-04 03:44:55] 2025-12-04 08:43:49,175 | INFO     | ready for new job
[2025-12-04 03:44:55] 2025-12-04 08:43:49,175 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-04 03:44:55] 2025-12-04 08:43:49,183 | INFO     | ***************************************
[2025-12-04 03:44:55] 2025-12-04 08:43:49,183 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-04 03:44:55] 2025-12-04 08:43:49,183 | INFO     | ***************************************
[2025-12-04 03:44:55] 2025-12-04 08:43:49,183 | INFO     | 
[2025-12-04 03:44:55] 2025-12-04 08:43:49,187 | INFO     | architecture information:
[2025-12-04 03:44:55] 2025-12-04 08:43:49,187 | INFO     | executing command: cat /etc/os-release
[2025-12-04 03:44:55] 2025-12-04 08:43:49,203 | INFO     | cat /etc/os-release:
[2025-12-04 03:44:55] NAME="CentOS Linux"
[2025-12-04 03:44:55] VERSION="7 (Core)"
[2025-12-04 03:44:55] ID="centos"
[2025-12-04 03:44:55] ID_LIKE="rhel fedora"
[2025-12-04 03:44:55] VERSION_ID="7"
[2025-12-04 03:44:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-04 03:44:55] ANSI_COLOR="0;31"
[2025-12-04 03:44:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-04 03:44:55] HOME_URL="https://www.centos.org/"
[2025-12-04 03:44:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-04 03:44:55] 
[2025-12-04 03:44:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-04 03:44:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-04 03:44:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-04 03:44:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-04 03:44:55] 
[2025-12-04 03:44:55] 2025-12-04 08:43:49,204 | INFO     | ***************************************
[2025-12-04 03:44:55] 2025-12-04 08:43:49,706 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-04 03:44:55] 2025-12-04 08:43:49,721 | INFO     | sufficient remaining disk space (62675484672 B)
[2025-12-04 03:44:55] 2025-12-04 08:43:49,722 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-04 03:44:55] 2025-12-04 08:43:49,722 | INFO     | current server update state: UPDATING_FINAL
[2025-12-04 03:44:55] 2025-12-04 08:43:49,722 | INFO     | update_server=False
[2025-12-04 03:44:55] 2025-12-04 08:43:49,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-04 03:44:55] 2025-12-04 08:43:49,776 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-04 03:44:55] 2025-12-04 08:43:49,777 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-04 03:44:55] 2025-12-04 08:43:49,777 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-04 03:44:55] 2025-12-04 08:43:49,777 | INFO     | will abort loop
[2025-12-04 03:44:55] 2025-12-04 08:43:49,822 | INFO     | all job control threads have been joined
[2025-12-04 03:44:55] 2025-12-04 08:43:49,920 | INFO     | all data control threads have been joined
[2025-12-04 03:44:55] 2025-12-04 08:43:50,268 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-04 03:44:55] 2025-12-04 08:43:50,727 | INFO     | [job] retrieve thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:50,782 | INFO     | [job] job monitor thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:50,827 | INFO     | [job] create_data_payload thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:50,828 | INFO     | [job] control thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:50,926 | INFO     | [data] control thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:51,227 | INFO     | all payload control threads have been joined
[2025-12-04 03:44:55] 2025-12-04 08:43:51,468 | INFO     | [payload] failed_post thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:51,624 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:51,771 | INFO     | [payload] validate_pre thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:51,816 | INFO     | [data] copytool_in thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:51,865 | INFO     | [job] validate thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:51,934 | INFO     | [payload] validate_post thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:52,080 | INFO     | [payload] execute_payloads thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:52,232 | INFO     | [payload] control thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:52,274 | INFO     | [data] copytool_out thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:52,627 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-04 03:44:55] 2025-12-04 08:43:52,882 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-04 03:44:55] 2025-12-04 08:43:53,633 | INFO     | [job] queue monitor thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:43:56,889 | INFO     | [data] queue_monitor thread has finished
[2025-12-04 03:44:55] 2025-12-04 08:44:19,783 | INFO     | PID=1939256 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-04 03:44:55] 2025-12-04 08:44:19,783 | INFO     | .. there are 8 such processes running
[2025-12-04 03:44:55] 2025-12-04 08:44:19,784 | INFO     | found 0 job(s) in 20 queues
[2025-12-04 03:44:55] 2025-12-04 08:44:19,784 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-04 03:44:55] 2025-12-04 08:44:19,785 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-04 03:44:55] 2025-12-04 08:44:49,448 | INFO     | [monitor] cgroup control has ended
[2025-12-04 03:44:55] 2025-12-04 08:44:50,026 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648831518528)>', '<ExcThread(monitor, started 140647856056064)>']
[2025-12-04 03:44:55] 2025-12-04 08:44:50,945 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-04 03:44:55] 2025-12-04 08:44:50,945 | INFO     | [monitor] control thread has ended
[2025-12-04 03:44:55] 2025-12-04 08:44:55,051 | INFO     | all workflow threads have been joined
[2025-12-04 03:44:55] 2025-12-04 08:44:55,052 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-04 03:44:55] 2025-12-04 08:44:55,052 | INFO     | traces error code: 0
[2025-12-04 03:44:55] 2025-12-04 08:44:55,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-04 03:44:55] 2025-12-04 08:44:55,221 [wrapper] ==== pilot stdout END ====
[2025-12-04 03:44:55] 2025-12-04 08:44:55,224 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-04 03:44:55] 2025-12-04 08:44:55,227 [wrapper] pilotpid: 1939256
[2025-12-04 03:44:55] 2025-12-04 08:44:55,230 [wrapper] Pilot exit status: 0
[2025-12-04 03:44:55] 2025-12-04 08:44:55,242 [wrapper] pandaids: 6897782753
[2025-12-04 03:44:55] 2025-12-04 08:44:55,297 [wrapper] cleanup supervisor_pilot   23226 1939257
[2025-12-04 03:44:55] 2025-12-04 08:44:55,299 [wrapper] Test setup, not cleaning
[2025-12-04 03:44:55] 2025-12-04 08:44:55,302 [wrapper] apfmon messages muted
[2025-12-04 03:44:55] 2025-12-04 08:44:55,305 [wrapper] ==== wrapper stdout END ====
[2025-12-04 03:44:55] 2025-12-04 08:44:55,308 [wrapper] ==== wrapper stderr END ====
[2025-12-04 03:44:55]  *** Error codes and diagnostics ***
[2025-12-04 03:44:55]     "exeErrorCode": 0,
[2025-12-04 03:44:55]     "exeErrorDiag": "",
[2025-12-04 03:44:55]     "pilotErrorCode": 0,
[2025-12-04 03:44:55]     "pilotErrorDiag": "",
[2025-12-04 03:44:55]  *** Listing of results directory ***
[2025-12-04 03:44:55] total 1075480
[2025-12-04 03:44:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 28 05:28 pilot3.tar.gz
[2025-12-04 03:44:55] -rwx------. 1 boincer umatlas     36292 Nov 28 05:32 runpilot2-wrapper.sh
[2025-12-04 03:44:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 28 05:33 queuedata.json
[2025-12-04 03:44:55] -rw-r--r--. 1 boincer umatlas       100 Dec  3 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-04 03:44:55] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  3 00:02 run_atlas
[2025-12-04 03:44:55] -rw-r--r--. 1 boincer umatlas       105 Dec  3 00:02 job.xml
[2025-12-04 03:44:55] -rw-r--r--. 2 boincer umatlas 375686543 Dec  3 00:02 EVNT.47530775._000018.pool.root.1
[2025-12-04 03:44:55] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 00:02 start_atlas.sh
[2025-12-04 03:44:55] drwxrwx--x. 2 boincer umatlas      4096 Dec  3 00:02 shared
[2025-12-04 03:44:55] -rw-r--r--. 2 boincer umatlas    590119 Dec  3 00:02 input.tar.gz
[2025-12-04 03:44:55] -rw-r--r--. 1 boincer umatlas         0 Dec  3 00:02 boinc_lockfile
[2025-12-04 03:44:55] -rw-r--r--. 1 boincer umatlas      2878 Dec  3 00:02 pandaJob.out
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas        57 Dec  3 00:02 setup.sh.local
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas    989297 Dec  3 00:04 agis_schedconf.cvmfs.json
[2025-12-04 03:44:55] drwx------. 5 boincer umatlas      4096 Dec  3 00:04 pilot3
[2025-12-04 03:44:55] -rw-r--r--. 1 boincer umatlas       533 Dec  4 03:33 boinc_task_state.xml
[2025-12-04 03:44:55] -rw-r--r--. 1 boincer umatlas      6616 Dec  4 03:40 init_data.xml
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas 691619134 Dec  4 03:43 HITS.47530783._000173.pool.root.1
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas      1055 Dec  4 03:43 memory_monitor_summary.json
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas   1516240 Dec  4 03:43 agis_ddmendpoints.agis.ALL.json
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas   2802246 Dec  4 03:43 log.47530783._000173.job.log.tgz.1
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas     27536 Dec  4 03:43 heartbeat.json
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas        95 Dec  4 03:44 pilot_heartbeat.json
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas      5009 Dec  4 03:44 pilotlog.txt
[2025-12-04 03:44:55] -rw-r--r--. 1 boincer umatlas      8192 Dec  4 03:44 boinc_mmap_file
[2025-12-04 03:44:55] -rw-r--r--. 1 boincer umatlas        29 Dec  4 03:44 wrapper_checkpoint.txt
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas  12215575 Dec  4 03:44 log.47530783._000173.job.log.1
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas       353 Dec  4 03:44 output.list
[2025-12-04 03:44:55] -rw-r--r--. 1 boincer umatlas       620 Dec  4 03:44 runtime_log
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas  15052800 Dec  4 03:44 result.tar.gz
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas       661 Dec  4 03:44 X7KNDm4wAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQgOKDmuqCPJn.diag
[2025-12-04 03:44:55] -rw-r--r--. 1 boincer umatlas      9343 Dec  4 03:44 runtime_log.err
[2025-12-04 03:44:55] -rw-r--r--. 1 boincer umatlas     21396 Dec  4 03:44 stderr.txt
[2025-12-04 03:44:55] HITS file was successfully produced:
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas 691619134 Dec  4 03:43 shared/HITS.pool.root.1
[2025-12-04 03:44:55]  *** Contents of shared directory: ***
[2025-12-04 03:44:55] total 1057596
[2025-12-04 03:44:55] -rw-r--r--. 2 boincer umatlas 375686543 Dec  3 00:02 ATLAS.root_0
[2025-12-04 03:44:55] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 00:02 start_atlas.sh
[2025-12-04 03:44:55] -rw-r--r--. 2 boincer umatlas    590119 Dec  3 00:02 input.tar.gz
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas 691619134 Dec  4 03:43 HITS.pool.root.1
[2025-12-04 03:44:55] -rw-------. 1 boincer umatlas  15052800 Dec  4 03:44 result.tar.gz
03:44:57 (1932561): run_atlas exited; CPU time 306466.405832
03:44:57 (1932561): called boinc_finish(0)

</stderr_txt>
]]>

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