Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:50:16 (2644937): wrapper (7.7.26015): starting
09:50:16 (2644937): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 09:50:16] Arguments: --nthreads 8
[2025-12-02 09:50:16] Threads: 8
[2025-12-02 09:50:16] Checking for CVMFS
[2025-12-02 09:50:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 09:50:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 09:50:17] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 09:50:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 09:50:19] 2.13.3.0 11888 38785 380200 153558 3 467 19159103 32935936 32109 16776704 0 204008430 99.517 254290931 35074 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 09:50:19] CVMFS is ok
[2025-12-02 09:50:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 09:50:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 09:50:19] Further information can be found at the LHC@home message board.
[2025-12-02 09:50:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 09:50:19] Checking for apptainer binary...
[2025-12-02 09:50:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 09:50:19] Running /usr/bin/apptainer --version
[2025-12-02 09:50:19] apptainer version 1.4.4-1.el9
[2025-12-02 09:50:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 09:50:20] c6-2-11-3.aglt2.org
[2025-12-02 09:50:20] apptainer works
[2025-12-02 09:50:20] Set ATHENA_PROC_NUMBER=8
[2025-12-02 09:50:20] Set ATHENA_CORE_NUMBER=8
[2025-12-02 09:50:20] Starting ATLAS job with PandaID=6894252914
[2025-12-02 09:50:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 09:31:23]  *** The last 200 lines of the pilot log: ***
[2025-12-03 09:31:23] 2025-12-03 14:30:32,381 | INFO     | monitor loop #4159: job 0:6894252914 is in state 'finished'
[2025-12-03 09:31:23] 2025-12-03 14:30:32,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 09:31:23] 2025-12-03 14:30:32,751 | INFO     | time since job start (85137s) is within the limit (172800.0s)
[2025-12-03 09:31:23] 2025-12-03 14:30:34,922 | INFO     | monitor loop #4160: job 0:6894252914 is in state 'finished'
[2025-12-03 09:31:23] 2025-12-03 14:30:34,923 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 09:31:23] 2025-12-03 14:30:37,484 | INFO     | monitor loop #4161: job 0:6894252914 is in state 'finished'
[2025-12-03 09:31:23] 2025-12-03 14:30:37,485 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 09:31:23] 2025-12-03 14:30:38,804 | INFO     | PID=2651175 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 09:31:23] 2025-12-03 14:30:38,804 | INFO     | .. there are 51 such processes running
[2025-12-03 09:31:23] 2025-12-03 14:30:39,805 | INFO     | time since job start (85144s) is within the limit (172800.0s)
[2025-12-03 09:31:23] 2025-12-03 14:30:39,989 | INFO     | monitor loop #4162: job 0:6894252914 is in state 'finished'
[2025-12-03 09:31:23] 2025-12-03 14:30:39,989 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 09:31:23] 2025-12-03 14:30:41,846 | INFO     | time since job start (85146s) is within the limit (172800.0s)
[2025-12-03 09:31:23] 2025-12-03 14:30:41,847 | INFO     | 85153s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-03 09:31:23] 2025-12-03 14:30:42,494 | INFO     | monitor loop #4163: job 0:6894252914 is in state 'finished'
[2025-12-03 09:31:23] 2025-12-03 14:30:42,494 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 09:31:23] 2025-12-03 14:30:42,952 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 09:31:23] 2025-12-03 14:30:42,976 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2718.195583333333
[2025-12-03 09:31:23] 2025-12-03 14:30:43,009 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6894252914/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 09:31:23] 2025-12-03 14:30:43,009 | INFO     | extracted standard info from prmon json
[2025-12-03 09:31:23] 2025-12-03 14:30:43,010 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 09:31:23] 2025-12-03 14:30:43,010 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 09:31:23] 2025-12-03 14:30:43,056 | INFO     | fitting pss+swap vs Time
[2025-12-03 09:31:23] 2025-12-03 14:30:43,062 | INFO     | sum of square deviations: 838146269098.682
[2025-12-03 09:31:23] 2025-12-03 14:30:43,136 | INFO     | sum of deviations: 4036258811058.823
[2025-12-03 09:31:23] 2025-12-03 14:30:43,137 | INFO     | mean x: 1764729706.4493897
[2025-12-03 09:31:23] 2025-12-03 14:30:43,137 | INFO     | mean y: 2862588.1536252694
[2025-12-03 09:31:23] 2025-12-03 14:30:43,137 | INFO     | intersect: -8495541675.404531
[2025-12-03 09:31:23] 2025-12-03 14:30:43,143 | INFO     | chi2: 24.73088336300989
[2025-12-03 09:31:23] 2025-12-03 14:30:43,148 | INFO     | sum of square deviations: 829154155063.5767
[2025-12-03 09:31:23] 2025-12-03 14:30:43,228 | INFO     | sum of deviations: 4508541375901.628
[2025-12-03 09:31:23] 2025-12-03 14:30:43,228 | INFO     | mean x: 1764729553.9582133
[2025-12-03 09:31:23] 2025-12-03 14:30:43,228 | INFO     | mean y: 2870595.2694524494
[2025-12-03 09:31:23] 2025-12-03 14:30:43,228 | INFO     | intersect: -9592879679.523495
[2025-12-03 09:31:23] 2025-12-03 14:30:43,230 | INFO     | chi2: 21.374380820474865
[2025-12-03 09:31:23] 2025-12-03 14:30:43,234 | INFO     | current chi2=21.374380820474865 (change=13.572109387549672 %)
[2025-12-03 09:31:23] 2025-12-03 14:30:43,234 | INFO     | right removable region: 1387
[2025-12-03 09:31:23] 2025-12-03 14:30:43,236 | INFO     | sum of square deviations: 829152073743.5759
[2025-12-03 09:31:23] 2025-12-03 14:30:43,314 | INFO     | sum of deviations: 3459226372874.8945
[2025-12-03 09:31:23] 2025-12-03 14:30:43,315 | INFO     | mean x: 1764729858.9582133
[2025-12-03 09:31:23] 2025-12-03 14:30:43,315 | INFO     | mean y: 2872371.6534582134
[2025-12-03 09:31:23] 2025-12-03 14:30:43,315 | INFO     | intersect: -7359588945.660881
[2025-12-03 09:31:23] 2025-12-03 14:30:43,317 | INFO     | chi2: 20.201365734598483
[2025-12-03 09:31:23] 2025-12-03 14:30:43,317 | INFO     | current chi2=20.201365734598483 (change=18.315227814248765 %)
[2025-12-03 09:31:23] 2025-12-03 14:30:43,317 | INFO     | left removable region: 10
[2025-12-03 09:31:23] 2025-12-03 14:30:43,323 | INFO     | sum of square deviations: 809594263009.575
[2025-12-03 09:31:23] 2025-12-03 14:30:43,395 | INFO     | sum of deviations: 3519661606603.528
[2025-12-03 09:31:23] 2025-12-03 14:30:43,399 | INFO     | mean x: 1764729828.4778504
[2025-12-03 09:31:23] 2025-12-03 14:30:43,400 | INFO     | mean y: 2890423.952069717
[2025-12-03 09:31:23] 2025-12-03 14:30:43,400 | INFO     | intersect: -7669164711.705506
[2025-12-03 09:31:23] 2025-12-03 14:30:43,402 | INFO     | chi2: 13.019250355623955
[2025-12-03 09:31:23] 2025-12-03 14:30:43,402 | INFO     | current memory leak: 4.35 B/s (using 1377 data points, chi2=13.02)
[2025-12-03 09:31:23] 2025-12-03 14:30:43,407 | INFO     | could have reported an average CPU frequency of 2694 MHz (50 samples)
[2025-12-03 09:31:23] 2025-12-03 14:30:43,408 | INFO     | ..............................
[2025-12-03 09:31:23] 2025-12-03 14:30:43,408 | INFO     | . Timing measurements:
[2025-12-03 09:31:23] 2025-12-03 14:30:43,408 | INFO     | . get job = 0 s
[2025-12-03 09:31:23] 2025-12-03 14:30:43,408 | INFO     | . initial setup = 6 s
[2025-12-03 09:31:23] 2025-12-03 14:30:43,408 | INFO     | . payload setup = 51 s
[2025-12-03 09:31:23] 2025-12-03 14:30:43,408 | INFO     | . stage-in = 0 s
[2025-12-03 09:31:23] 2025-12-03 14:30:43,408 | INFO     | . payload execution = 84975 s
[2025-12-03 09:31:23] 2025-12-03 14:30:43,408 | INFO     | . stage-out = 11 s
[2025-12-03 09:31:23] 2025-12-03 14:30:43,408 | INFO     | . log creation = 1 s
[2025-12-03 09:31:23] 2025-12-03 14:30:43,408 | INFO     | ..............................
[2025-12-03 09:31:23] 2025-12-03 14:30:43,883 | INFO     | time since job start (85148s) is within the limit (172800.0s)
[2025-12-03 09:31:23] 2025-12-03 14:30:44,072 | INFO     | 
[2025-12-03 09:31:23] 2025-12-03 14:30:44,072 | INFO     | job summary report
[2025-12-03 09:31:23] 2025-12-03 14:30:44,073 | INFO     | --------------------------------------------------
[2025-12-03 09:31:23] 2025-12-03 14:30:44,073 | INFO     | PanDA job id: 6894252914
[2025-12-03 09:31:23] 2025-12-03 14:30:44,073 | INFO     | task id: 47533967
[2025-12-03 09:31:23] 2025-12-03 14:30:44,073 | INFO     | errors: (none)
[2025-12-03 09:31:23] 2025-12-03 14:30:44,073 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 09:31:23] 2025-12-03 14:30:44,073 | INFO     | pilot state: finished 
[2025-12-03 09:31:23] 2025-12-03 14:30:44,073 | INFO     | transexitcode: 0
[2025-12-03 09:31:23] 2025-12-03 14:30:44,073 | INFO     | exeerrorcode: 0
[2025-12-03 09:31:23] 2025-12-03 14:30:44,073 | INFO     | exeerrordiag: 
[2025-12-03 09:31:23] 2025-12-03 14:30:44,073 | INFO     | exitcode: 0
[2025-12-03 09:31:23] 2025-12-03 14:30:44,073 | INFO     | exitmsg: OK
[2025-12-03 09:31:23] 2025-12-03 14:30:44,073 | INFO     | cpuconsumptiontime: 257138 s
[2025-12-03 09:31:23] 2025-12-03 14:30:44,074 | INFO     | nevents: 1000
[2025-12-03 09:31:23] 2025-12-03 14:30:44,074 | INFO     | neventsw: 0
[2025-12-03 09:31:23] 2025-12-03 14:30:44,074 | INFO     | pid: 2667618
[2025-12-03 09:31:23] 2025-12-03 14:30:44,074 | INFO     | pgrp: 2667618
[2025-12-03 09:31:23] 2025-12-03 14:30:44,074 | INFO     | corecount: 8
[2025-12-03 09:31:23] 2025-12-03 14:30:44,074 | INFO     | event service: False
[2025-12-03 09:31:23] 2025-12-03 14:30:44,074 | INFO     | sizes: {0: 2284086, 1: 2284170, 2: 2284369, 13: 2284369, 24: 2284425, 35: 2284715, 36: 2284871, 85032: 2347693, 85045: 2356743, 85081: 2356933}
[2025-12-03 09:31:23] 2025-12-03 14:30:44,074 | INFO     | --------------------------------------------------
[2025-12-03 09:31:23] 2025-12-03 14:30:44,074 | INFO     | 
[2025-12-03 09:31:23] 2025-12-03 14:30:44,074 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-03 09:31:23] 2025-12-03 14:30:44,283 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,283 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,283 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,283 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,283 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,283 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,283 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,283 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,284 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,284 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,284 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,284 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,284 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,284 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,284 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,284 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,284 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,284 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 09:31:23] 2025-12-03 14:30:44,284 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,284 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 09:31:23] 2025-12-03 14:30:44,284 | INFO     | job 6894252914 has completed (purged errors)
[2025-12-03 09:31:23] 2025-12-03 14:30:44,285 | INFO     | overall cleanup function is called
[2025-12-03 09:31:23] 2025-12-03 14:30:45,364 | INFO     | --- collectZombieJob: --- 10, [2667618]
[2025-12-03 09:31:23] 2025-12-03 14:30:45,365 | INFO     | zombie collector waiting for pid 2667618
[2025-12-03 09:31:23] 2025-12-03 14:30:45,365 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 09:31:23] 2025-12-03 14:30:45,365 | INFO     | collected zombie processes
[2025-12-03 09:31:23] 2025-12-03 14:30:45,365 | INFO     | will attempt to kill all subprocesses of pid=2667618
[2025-12-03 09:31:23] 2025-12-03 14:30:49,104 | INFO     | process IDs to be killed: [2667618] (in reverse order)
[2025-12-03 09:31:23] 2025-12-03 14:30:49,872 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 09:31:23] 2025-12-03 14:30:49,872 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 09:31:23] 2025-12-03 14:30:50,015 | INFO     | did not find any defunct processes belonging to 2667618
[2025-12-03 09:31:23] 2025-12-03 14:30:50,226 | INFO     | did not find any defunct processes belonging to 2667618
[2025-12-03 09:31:23] 2025-12-03 14:30:50,239 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 09:31:23] 2025-12-03 14:30:50,239 | INFO     | ready for new job
[2025-12-03 09:31:23] 2025-12-03 14:30:50,239 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 09:31:23] 2025-12-03 14:30:50,261 | INFO     | ***************************************
[2025-12-03 09:31:23] 2025-12-03 14:30:50,261 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 09:31:23] 2025-12-03 14:30:50,261 | INFO     | ***************************************
[2025-12-03 09:31:23] 2025-12-03 14:30:50,261 | INFO     | 
[2025-12-03 09:31:23] 2025-12-03 14:30:50,308 | INFO     | architecture information:
[2025-12-03 09:31:23] 2025-12-03 14:30:50,320 | INFO     | executing command: cat /etc/os-release
[2025-12-03 09:31:23] 2025-12-03 14:30:50,496 | INFO     | cat /etc/os-release:
[2025-12-03 09:31:23] NAME="CentOS Linux"
[2025-12-03 09:31:23] VERSION="7 (Core)"
[2025-12-03 09:31:23] ID="centos"
[2025-12-03 09:31:23] ID_LIKE="rhel fedora"
[2025-12-03 09:31:23] VERSION_ID="7"
[2025-12-03 09:31:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 09:31:23] ANSI_COLOR="0;31"
[2025-12-03 09:31:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 09:31:23] HOME_URL="https://www.centos.org/"
[2025-12-03 09:31:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 09:31:23] 
[2025-12-03 09:31:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 09:31:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 09:31:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 09:31:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 09:31:23] 
[2025-12-03 09:31:23] 2025-12-03 14:30:50,497 | INFO     | ***************************************
[2025-12-03 09:31:23] 2025-12-03 14:30:51,000 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-03 09:31:23] 2025-12-03 14:30:51,056 | INFO     | sufficient remaining disk space (71467794432 B)
[2025-12-03 09:31:23] 2025-12-03 14:30:51,056 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 09:31:23] 2025-12-03 14:30:51,056 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 09:31:23] 2025-12-03 14:30:51,056 | INFO     | update_server=False
[2025-12-03 09:31:23] 2025-12-03 14:30:51,056 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 09:31:23] 2025-12-03 14:30:51,058 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 09:31:23] 2025-12-03 14:30:51,081 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 09:31:23] 2025-12-03 14:30:51,225 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:31:23] 2025-12-03 14:30:51,225 | INFO     | aborting loop
[2025-12-03 09:31:23] 2025-12-03 14:30:51,257 | INFO     | all data control threads have been joined
[2025-12-03 09:31:23] 2025-12-03 14:30:52,065 | INFO     | [job] retrieve thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:52,221 | INFO     | [data] copytool_in thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:52,231 | INFO     | [job] job monitor thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:52,296 | INFO     | [data] control thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:52,338 | INFO     | all payload control threads have been joined
[2025-12-03 09:31:23] 2025-12-03 14:30:52,494 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:52,517 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:52,542 | INFO     | all job control threads have been joined
[2025-12-03 09:31:23] 2025-12-03 14:30:52,647 | INFO     | [payload] failed_post thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:53,077 | INFO     | [data] copytool_out thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:53,222 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:53,231 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:31:23] 2025-12-03 14:30:53,344 | INFO     | [payload] control thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:53,481 | INFO     | [job] validate thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:53,482 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:53,548 | INFO     | [job] control thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:53,626 | INFO     | [payload] validate_post thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:54,238 | INFO     | [job] queue monitor thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:30:55,107 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 09:31:23] 2025-12-03 14:31:13,698 | INFO     | [monitor] cgroup control has ended
[2025-12-03 09:31:23] 2025-12-03 14:31:14,381 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140334248355648)>', '<ExcThread(monitor, started 140333593638656)>']
[2025-12-03 09:31:23] 2025-12-03 14:31:19,419 | INFO     | all workflow threads have been joined
[2025-12-03 09:31:23] 2025-12-03 14:31:19,420 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 09:31:23] 2025-12-03 14:31:19,420 | INFO     | traces error code: 0
[2025-12-03 09:31:23] 2025-12-03 14:31:19,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 09:31:23] 2025-12-03 14:31:20,444 | INFO     | PID=2651175 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 09:31:23] 2025-12-03 14:31:20,444 | INFO     | .. there are 51 such processes running
[2025-12-03 09:31:23] 2025-12-03 14:31:20,445 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 09:31:23] 2025-12-03 14:31:20,445 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 09:31:23] 2025-12-03 14:31:20,445 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 09:31:23] 2025-12-03 14:31:20,450 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 09:31:23] 2025-12-03 14:31:20,450 | INFO     | [monitor] control thread has ended
[2025-12-03 09:31:23] 2025-12-03 14:31:21,046 [wrapper] ==== pilot stdout END ====
[2025-12-03 09:31:23] 2025-12-03 14:31:21,071 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 09:31:23] 2025-12-03 14:31:21,087 [wrapper] pilotpid: 2651175
[2025-12-03 09:31:23] 2025-12-03 14:31:21,129 [wrapper] Pilot exit status: 0
[2025-12-03 09:31:23] 2025-12-03 14:31:21,216 [wrapper] pandaids: 6894252914
[2025-12-03 09:31:23] 2025-12-03 14:31:22,261 [wrapper] cleanup supervisor_pilot   44404 2651176
[2025-12-03 09:31:23] 2025-12-03 14:31:22,301 [wrapper] Test setup, not cleaning
[2025-12-03 09:31:23] 2025-12-03 14:31:22,369 [wrapper] apfmon messages muted
[2025-12-03 09:31:23] 2025-12-03 14:31:22,435 [wrapper] ==== wrapper stdout END ====
[2025-12-03 09:31:23] 2025-12-03 14:31:22,463 [wrapper] ==== wrapper stderr END ====
[2025-12-03 09:31:23]  *** Error codes and diagnostics ***
[2025-12-03 09:31:23]     "exeErrorCode": 0,
[2025-12-03 09:31:23]     "exeErrorDiag": "",
[2025-12-03 09:31:23]     "pilotErrorCode": 0,
[2025-12-03 09:31:23]     "pilotErrorDiag": "",
[2025-12-03 09:31:23]  *** Listing of results directory ***
[2025-12-03 09:31:23] total 1331504
[2025-12-03 09:31:23] -rwx------. 1 boincer umatlas     36292 Nov 20 21:10 runpilot2-wrapper.sh
[2025-12-03 09:31:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 21:10 queuedata.json
[2025-12-03 09:31:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 21:10 pilot3.tar.gz
[2025-12-03 09:31:23] -rw-r--r--. 1 boincer umatlas       100 Dec  2 09:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 09:31:23] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 09:50 run_atlas
[2025-12-03 09:31:23] -rw-r--r--. 1 boincer umatlas       105 Dec  2 09:50 job.xml
[2025-12-03 09:31:23] -rw-r--r--. 2 boincer umatlas 410565236 Dec  2 09:50 EVNT.47493127._002118.pool.root.1
[2025-12-03 09:31:23] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 09:50 start_atlas.sh
[2025-12-03 09:31:23] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 09:50 shared
[2025-12-03 09:31:23] -rw-r--r--. 2 boincer umatlas    590092 Dec  2 09:50 input.tar.gz
[2025-12-03 09:31:23] -rw-r--r--. 1 boincer umatlas         0 Dec  2 09:50 boinc_lockfile
[2025-12-03 09:31:23] -rw-r--r--. 1 boincer umatlas      2785 Dec  2 09:50 pandaJob.out
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas        57 Dec  2 09:50 setup.sh.local
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas    987484 Dec  2 09:51 agis_schedconf.cvmfs.json
[2025-12-03 09:31:23] drwx------. 5 boincer umatlas      4096 Dec  2 09:51 pilot3
[2025-12-03 09:31:23] -rw-r--r--. 1 boincer umatlas       533 Dec  3 09:00 boinc_task_state.xml
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas 925181899 Dec  3 09:27 HITS.47533967._000899.pool.root.1
[2025-12-03 09:31:23] -rw-r--r--. 1 boincer umatlas      6879 Dec  3 09:29 init_data.xml
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas      1059 Dec  3 09:29 memory_monitor_summary.json
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas   1516240 Dec  3 09:30 agis_ddmendpoints.agis.ALL.json
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas   2361427 Dec  3 09:30 log.47533967._000899.job.log.tgz.1
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas      8627 Dec  3 09:30 heartbeat.json
[2025-12-03 09:31:23] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 09:31 boinc_mmap_file
[2025-12-03 09:31:23] -rw-r--r--. 1 boincer umatlas        29 Dec  3 09:31 wrapper_checkpoint.txt
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas        95 Dec  3 09:31 pilot_heartbeat.json
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas       823 Dec  3 09:31 pilotlog.txt
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas   9538116 Dec  3 09:31 log.47533967._000899.job.log.1
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas       353 Dec  3 09:31 output.list
[2025-12-03 09:31:23] -rw-r--r--. 1 boincer umatlas       620 Dec  3 09:31 runtime_log
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas  11919360 Dec  3 09:31 result.tar.gz
[2025-12-03 09:31:23] -rw-r--r--. 1 boincer umatlas      9348 Dec  3 09:31 runtime_log.err
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas       661 Dec  3 09:31 hIMKDmmmVg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXsIKDmuztHIo.diag
[2025-12-03 09:31:23] -rw-r--r--. 1 boincer umatlas     21896 Dec  3 09:31 stderr.txt
[2025-12-03 09:31:23] HITS file was successfully produced:
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas 925181899 Dec  3 09:27 shared/HITS.pool.root.1
[2025-12-03 09:31:23]  *** Contents of shared directory: ***
[2025-12-03 09:31:23] total 1316688
[2025-12-03 09:31:23] -rw-r--r--. 2 boincer umatlas 410565236 Dec  2 09:50 ATLAS.root_0
[2025-12-03 09:31:23] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 09:50 start_atlas.sh
[2025-12-03 09:31:23] -rw-r--r--. 2 boincer umatlas    590092 Dec  2 09:50 input.tar.gz
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas 925181899 Dec  3 09:27 HITS.pool.root.1
[2025-12-03 09:31:23] -rw-------. 1 boincer umatlas  11919360 Dec  3 09:31 result.tar.gz
09:31:24 (2644937): run_atlas exited; CPU time 260620.186236
09:31:24 (2644937): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN