Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:19:45 (2518657): wrapper (7.7.26015): starting
12:19:45 (2518657): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 12:19:45] Arguments: --nthreads 8
[2025-12-02 12:19:45] Threads: 8
[2025-12-02 12:19:45] Checking for CVMFS
[2025-12-02 12:19:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 12:19:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 12:19:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 12:20:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 12:20:06] 2.13.2.0 1657905 39190 230876 153564 1 358 27640996 40960000 32794 16776704 0 453480075 99.693 359256559 48531 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 12:20:06] CVMFS is ok
[2025-12-02 12:20:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 12:20:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 12:20:06] Further information can be found at the LHC@home message board.
[2025-12-02 12:20:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 12:20:06] Checking for apptainer binary...
[2025-12-02 12:20:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 12:20:06] Running /usr/bin/apptainer --version
[2025-12-02 12:20:06] apptainer version 1.4.4-1.el9
[2025-12-02 12:20:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 12:20:07] c-208-39.aglt2.org
[2025-12-02 12:20:07] apptainer works
[2025-12-02 12:20:07] Set ATHENA_PROC_NUMBER=8
[2025-12-02 12:20:07] Set ATHENA_CORE_NUMBER=8
[2025-12-02 12:20:07] Starting ATLAS job with PandaID=6895350304
[2025-12-02 12:20:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 20:43:04]  *** The last 200 lines of the pilot log: ***
[2025-12-02 20:43:04] 2025-12-03 01:42:18,999 | INFO     | monitor loop #1833: job 0:6895350304 is in state 'finished'
[2025-12-02 20:43:04] 2025-12-03 01:42:18,999 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:43:04] 2025-12-03 01:42:19,857 | INFO     | PID=2529908 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 20:43:04] 2025-12-03 01:42:19,858 | INFO     | .. there are 52 such processes running
[2025-12-02 20:43:04] 2025-12-03 01:42:20,859 | INFO     | time since job start (30093s) is within the limit (172800.0s)
[2025-12-02 20:43:04] 2025-12-03 01:42:21,536 | INFO     | monitor loop #1834: job 0:6895350304 is in state 'finished'
[2025-12-02 20:43:04] 2025-12-03 01:42:21,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:43:04] 2025-12-03 01:42:22,866 | INFO     | time since job start (30095s) is within the limit (172800.0s)
[2025-12-02 20:43:04] 2025-12-03 01:42:24,041 | INFO     | monitor loop #1835: job 0:6895350304 is in state 'finished'
[2025-12-02 20:43:04] 2025-12-03 01:42:24,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:43:04] 2025-12-03 01:42:24,873 | INFO     | time since job start (30097s) is within the limit (172800.0s)
[2025-12-02 20:43:04] 2025-12-03 01:42:26,546 | INFO     | monitor loop #1836: job 0:6895350304 is in state 'finished'
[2025-12-02 20:43:04] 2025-12-03 01:42:26,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:43:04] 2025-12-03 01:42:26,880 | INFO     | time since job start (30099s) is within the limit (172800.0s)
[2025-12-02 20:43:04] 2025-12-03 01:42:28,887 | INFO     | time since job start (30101s) is within the limit (172800.0s)
[2025-12-02 20:43:04] 2025-12-03 01:42:29,051 | INFO     | monitor loop #1837: job 0:6895350304 is in state 'finished'
[2025-12-02 20:43:04] 2025-12-03 01:42:29,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:43:04] 2025-12-03 01:42:29,225 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 20:43:04] 2025-12-03 01:42:29,234 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3782.7704531249988
[2025-12-02 20:43:04] 2025-12-03 01:42:29,261 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895350304/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 20:43:04] 2025-12-03 01:42:29,261 | INFO     | extracted standard info from prmon json
[2025-12-02 20:43:04] 2025-12-03 01:42:29,261 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 20:43:04] 2025-12-03 01:42:29,261 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 20:43:04] 2025-12-03 01:42:29,301 | INFO     | fitting pss+swap vs Time
[2025-12-02 20:43:04] 2025-12-03 01:42:29,302 | INFO     | sum of square deviations: 36926732417.41448
[2025-12-02 20:43:04] 2025-12-03 01:42:29,309 | INFO     | sum of deviations: -317024690719.87854
[2025-12-02 20:43:04] 2025-12-03 01:42:29,309 | INFO     | mean x: 1764711100.4146342
[2025-12-02 20:43:04] 2025-12-03 01:42:29,309 | INFO     | mean y: 2835484.288617886
[2025-12-02 20:43:04] 2025-12-03 01:42:29,309 | INFO     | intersect: 15153295711.715849
[2025-12-02 20:43:04] 2025-12-03 01:42:29,309 | INFO     | chi2: 17.73746967709523
[2025-12-02 20:43:04] 2025-12-03 01:42:29,310 | INFO     | sum of square deviations: 35812524393.8973
[2025-12-02 20:43:04] 2025-12-03 01:42:29,329 | INFO     | sum of deviations: -160209281216.69995
[2025-12-02 20:43:04] 2025-12-03 01:42:29,329 | INFO     | mean x: 1764710947.9342916
[2025-12-02 20:43:04] 2025-12-03 01:42:29,329 | INFO     | mean y: 2856934.071868583
[2025-12-02 20:43:04] 2025-12-03 01:42:29,329 | INFO     | intersect: 7897387613.176189
[2025-12-02 20:43:04] 2025-12-03 01:42:29,329 | INFO     | chi2: 14.424305840027031
[2025-12-02 20:43:04] 2025-12-03 01:42:29,329 | INFO     | current chi2=14.424305840027031 (change=18.678897821297234 %)
[2025-12-02 20:43:04] 2025-12-03 01:42:29,329 | INFO     | right removable region: 486
[2025-12-02 20:43:04] 2025-12-03 01:42:29,330 | INFO     | sum of square deviations: 35811979544.7638
[2025-12-02 20:43:04] 2025-12-03 01:42:29,370 | INFO     | sum of deviations: -460687916673.6161
[2025-12-02 20:43:04] 2025-12-03 01:42:29,370 | INFO     | mean x: 1764711252.932238
[2025-12-02 20:43:04] 2025-12-03 01:42:29,370 | INFO     | mean y: 2855092.344969199
[2025-12-02 20:43:04] 2025-12-03 01:42:29,370 | INFO     | intersect: 22704229352.531837
[2025-12-02 20:43:04] 2025-12-03 01:42:29,370 | INFO     | chi2: 15.161092784756663
[2025-12-02 20:43:04] 2025-12-03 01:42:29,371 | INFO     | current chi2=15.161092784756663 (change=14.525053117725676 %)
[2025-12-02 20:43:04] 2025-12-03 01:42:29,371 | INFO     | left removable region: 10
[2025-12-02 20:43:04] 2025-12-03 01:42:29,371 | INFO     | sum of square deviations: 33440051413.353065
[2025-12-02 20:43:04] 2025-12-03 01:42:29,399 | INFO     | sum of deviations: -290536270093.47064
[2025-12-02 20:43:04] 2025-12-03 01:42:29,399 | INFO     | mean x: 1764711222.4411764
[2025-12-02 20:43:04] 2025-12-03 01:42:29,399 | INFO     | mean y: 2883412.768907563
[2025-12-02 20:43:04] 2025-12-03 01:42:29,399 | INFO     | intersect: 15335174922.207655
[2025-12-02 20:43:04] 2025-12-03 01:42:29,399 | INFO     | chi2: 11.208984176220257
[2025-12-02 20:43:04] 2025-12-03 01:42:29,400 | INFO     | current memory leak: -8.69 B/s (using 476 data points, chi2=11.21)
[2025-12-02 20:43:04] 2025-12-03 01:42:29,400 | INFO     | could have reported an average CPU frequency of 3787 MHz (20 samples)
[2025-12-02 20:43:04] 2025-12-03 01:42:29,400 | INFO     | ..............................
[2025-12-02 20:43:04] 2025-12-03 01:42:29,400 | INFO     | . Timing measurements:
[2025-12-02 20:43:04] 2025-12-03 01:42:29,400 | INFO     | . get job = 0 s
[2025-12-02 20:43:04] 2025-12-03 01:42:29,400 | INFO     | . initial setup = 3 s
[2025-12-02 20:43:04] 2025-12-03 01:42:29,400 | INFO     | . payload setup = 21 s
[2025-12-02 20:43:04] 2025-12-03 01:42:29,400 | INFO     | . stage-in = 0 s
[2025-12-02 20:43:04] 2025-12-03 01:42:29,400 | INFO     | . payload execution = 29996 s
[2025-12-02 20:43:04] 2025-12-03 01:42:29,400 | INFO     | . stage-out = 5 s
[2025-12-02 20:43:04] 2025-12-03 01:42:29,400 | INFO     | . log creation = 1 s
[2025-12-02 20:43:04] 2025-12-03 01:42:29,400 | INFO     | ..............................
[2025-12-02 20:43:04] 2025-12-03 01:42:29,787 | INFO     | 
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | job summary report
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | --------------------------------------------------
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | PanDA job id: 6895350304
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | task id: 47556137
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | errors: (none)
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | pilot state: finished 
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | transexitcode: 0
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | exeerrorcode: 0
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | exeerrordiag: 
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | exitcode: 0
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | exitmsg: OK
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | cpuconsumptiontime: 139952 s
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | nevents: 1000
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | neventsw: 0
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | pid: 2544118
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | pgrp: 2544118
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | corecount: 8
[2025-12-02 20:43:04] 2025-12-03 01:42:29,788 | INFO     | event service: False
[2025-12-02 20:43:04] 2025-12-03 01:42:29,789 | INFO     | sizes: {0: 2284093, 1: 2284292, 11: 2284292, 16: 2284582, 22: 2284610, 30022: 2322437, 30028: 2331431, 30029: 2331487, 30064: 2331733}
[2025-12-02 20:43:04] 2025-12-03 01:42:29,789 | INFO     | --------------------------------------------------
[2025-12-02 20:43:04] 2025-12-03 01:42:29,789 | INFO     | 
[2025-12-02 20:43:04] 2025-12-03 01:42:29,789 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-02 20:43:04] 2025-12-03 01:42:29,890 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,890 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,890 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,890 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,890 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,890 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,890 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,890 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,890 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,890 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,891 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,891 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,891 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,891 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,891 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,891 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 20:43:04] 2025-12-03 01:42:29,891 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,891 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 20:43:04] 2025-12-03 01:42:29,891 | INFO     | job 6895350304 has completed (purged errors)
[2025-12-02 20:43:04] 2025-12-03 01:42:29,891 | INFO     | overall cleanup function is called
[2025-12-02 20:43:04] 2025-12-03 01:42:30,924 | INFO     | --- collectZombieJob: --- 10, [2544118]
[2025-12-02 20:43:04] 2025-12-03 01:42:30,946 | INFO     | zombie collector waiting for pid 2544118
[2025-12-02 20:43:04] 2025-12-03 01:42:30,946 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 20:43:04] 2025-12-03 01:42:30,946 | INFO     | collected zombie processes
[2025-12-02 20:43:04] 2025-12-03 01:42:30,947 | INFO     | will attempt to kill all subprocesses of pid=2544118
[2025-12-02 20:43:04] 2025-12-03 01:42:32,102 | INFO     | process IDs to be killed: [2544118] (in reverse order)
[2025-12-02 20:43:04] 2025-12-03 01:42:32,661 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 20:43:04] 2025-12-03 01:42:32,662 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 20:43:04] 2025-12-03 01:42:32,718 | INFO     | did not find any defunct processes belonging to 2544118
[2025-12-02 20:43:04] 2025-12-03 01:42:32,769 | INFO     | did not find any defunct processes belonging to 2544118
[2025-12-02 20:43:04] 2025-12-03 01:42:32,770 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 20:43:04] 2025-12-03 01:42:32,770 | INFO     | ready for new job
[2025-12-02 20:43:04] 2025-12-03 01:42:32,770 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 20:43:04] 2025-12-03 01:42:32,772 | INFO     | ***************************************
[2025-12-02 20:43:04] 2025-12-03 01:42:32,772 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 20:43:04] 2025-12-03 01:42:32,772 | INFO     | ***************************************
[2025-12-02 20:43:04] 2025-12-03 01:42:32,772 | INFO     | 
[2025-12-02 20:43:04] 2025-12-03 01:42:32,785 | INFO     | architecture information:
[2025-12-02 20:43:04] 2025-12-03 01:42:32,785 | INFO     | executing command: cat /etc/os-release
[2025-12-02 20:43:04] 2025-12-03 01:42:32,855 | INFO     | cat /etc/os-release:
[2025-12-02 20:43:04] NAME="CentOS Linux"
[2025-12-02 20:43:04] VERSION="7 (Core)"
[2025-12-02 20:43:04] ID="centos"
[2025-12-02 20:43:04] ID_LIKE="rhel fedora"
[2025-12-02 20:43:04] VERSION_ID="7"
[2025-12-02 20:43:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 20:43:04] ANSI_COLOR="0;31"
[2025-12-02 20:43:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 20:43:04] HOME_URL="https://www.centos.org/"
[2025-12-02 20:43:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 20:43:04] 
[2025-12-02 20:43:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 20:43:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 20:43:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 20:43:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 20:43:04] 
[2025-12-02 20:43:04] 2025-12-03 01:42:32,855 | INFO     | ***************************************
[2025-12-02 20:43:04] 2025-12-03 01:42:33,367 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-02 20:43:04] 2025-12-03 01:42:33,512 | INFO     | sufficient remaining disk space (163188834304 B)
[2025-12-02 20:43:04] 2025-12-03 01:42:33,512 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 20:43:04] 2025-12-03 01:42:33,512 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 20:43:04] 2025-12-03 01:42:33,512 | INFO     | update_server=False
[2025-12-02 20:43:04] 2025-12-03 01:42:33,512 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 20:43:04] 2025-12-03 01:42:33,514 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:43:04] 2025-12-03 01:42:33,514 | INFO     | aborting loop
[2025-12-02 20:43:04] 2025-12-03 01:42:34,404 | INFO     | all data control threads have been joined
[2025-12-02 20:43:04] 2025-12-03 01:42:34,477 | INFO     | all payload control threads have been joined
[2025-12-02 20:43:04] 2025-12-03 01:42:34,520 | INFO     | [job] retrieve thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:34,520 | INFO     | [job] job monitor thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:34,546 | INFO     | [job] validate thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:34,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:43:04] 2025-12-03 01:42:34,734 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 20:43:04] 2025-12-03 01:42:34,834 | INFO     | [payload] failed_post thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:34,862 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:34,862 | INFO     | [data] copytool_in thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:35,026 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:35,193 | INFO     | all job control threads have been joined
[2025-12-02 20:43:04] 2025-12-03 01:42:35,359 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:35,410 | INFO     | [data] control thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:35,483 | INFO     | [payload] control thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:35,596 | INFO     | [job] queue monitor thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:35,601 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:35,715 | INFO     | [payload] validate_post thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:36,199 | INFO     | [job] control thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:36,743 | INFO     | [data] copytool_out thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:36,993 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 20:43:04] 2025-12-03 01:42:39,506 | INFO     | [monitor] cgroup control has ended
[2025-12-02 20:43:04] 2025-12-03 01:42:41,018 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 20:43:04] 2025-12-03 01:42:42,607 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139708307822400)>', '<ExcThread(monitor, started 139707786696448)>']
[2025-12-02 20:43:04] 2025-12-03 01:42:47,633 | INFO     | all workflow threads have been joined
[2025-12-02 20:43:04] 2025-12-03 01:42:47,633 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 20:43:04] 2025-12-03 01:42:47,633 | INFO     | traces error code: 0
[2025-12-02 20:43:04] 2025-12-03 01:42:47,633 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 20:43:04] 2025-12-03 01:43:02,845 | INFO     | PID=2529908 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 20:43:04] 2025-12-03 01:43:02,849 | INFO     | .. there are 52 such processes running
[2025-12-02 20:43:04] 2025-12-03 01:43:02,849 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 20:43:04] 2025-12-03 01:43:02,849 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 20:43:04] 2025-12-03 01:43:02,849 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 20:43:04] 2025-12-03 01:43:02,849 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 20:43:04] 2025-12-03 01:43:02,849 | INFO     | [monitor] control thread has ended
[2025-12-02 20:43:04] 2025-12-03 01:43:03,034 [wrapper] ==== pilot stdout END ====
[2025-12-02 20:43:04] 2025-12-03 01:43:03,053 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 20:43:04] 2025-12-03 01:43:03,088 [wrapper] pilotpid: 2529908
[2025-12-02 20:43:04] 2025-12-03 01:43:03,099 [wrapper] Pilot exit status: 0
[2025-12-02 20:43:04] 2025-12-03 01:43:03,200 [wrapper] pandaids: 6895350304
[2025-12-02 20:43:04] 2025-12-03 01:43:03,460 [wrapper] cleanup supervisor_pilot 1876698 2529909
[2025-12-02 20:43:04] 2025-12-03 01:43:03,481 [wrapper] Test setup, not cleaning
[2025-12-02 20:43:04] 2025-12-03 01:43:03,516 [wrapper] apfmon messages muted
[2025-12-02 20:43:04] 2025-12-03 01:43:03,539 [wrapper] ==== wrapper stdout END ====
[2025-12-02 20:43:04] 2025-12-03 01:43:03,553 [wrapper] ==== wrapper stderr END ====
[2025-12-02 20:43:04]  *** Error codes and diagnostics ***
[2025-12-02 20:43:04]     "exeErrorCode": 0,
[2025-12-02 20:43:04]     "exeErrorDiag": "",
[2025-12-02 20:43:04]     "pilotErrorCode": 0,
[2025-12-02 20:43:04]     "pilotErrorDiag": "",
[2025-12-02 20:43:04]  *** Listing of results directory ***
[2025-12-02 20:43:04] total 1332624
[2025-12-02 20:43:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 15:41 pilot3.tar.gz
[2025-12-02 20:43:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 16:02 queuedata.json
[2025-12-02 20:43:04] -rwx------. 1 boincer umatlas     36292 Nov 22 16:03 runpilot2-wrapper.sh
[2025-12-02 20:43:04] -rw-r--r--. 1 boincer umatlas       100 Dec  2 12:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 20:43:04] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 12:19 run_atlas
[2025-12-02 20:43:04] -rw-r--r--. 1 boincer umatlas       105 Dec  2 12:19 job.xml
[2025-12-02 20:43:04] -rw-r--r--. 2 boincer umatlas 410893963 Dec  2 12:19 EVNT.47483658._000506.pool.root.1
[2025-12-02 20:43:04] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 12:19 start_atlas.sh
[2025-12-02 20:43:04] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 12:19 shared
[2025-12-02 20:43:04] -rw-r--r--. 2 boincer umatlas    590108 Dec  2 12:19 input.tar.gz
[2025-12-02 20:43:04] -rw-r--r--. 1 boincer umatlas         0 Dec  2 12:19 boinc_lockfile
[2025-12-02 20:43:04] -rw-r--r--. 1 boincer umatlas      2785 Dec  2 12:20 pandaJob.out
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas        57 Dec  2 12:20 setup.sh.local
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas    988858 Dec  2 12:20 agis_schedconf.cvmfs.json
[2025-12-02 20:43:04] drwx------. 5 boincer umatlas      4096 Dec  2 12:20 pilot3
[2025-12-02 20:43:04] -rw-r--r--. 1 boincer umatlas       533 Dec  2 20:17 boinc_task_state.xml
[2025-12-02 20:43:04] -rw-r--r--. 1 boincer umatlas      7175 Dec  2 20:39 init_data.xml
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas 938625487 Dec  2 20:40 HITS.47556137._005017.pool.root.1
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas      1074 Dec  2 20:41 memory_monitor_summary.json
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas   1516240 Dec  2 20:41 agis_ddmendpoints.agis.ALL.json
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas   1747076 Dec  2 20:41 log.47556137._005017.job.log.tgz.1
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas      7957 Dec  2 20:42 heartbeat.json
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas        95 Dec  2 20:43 pilot_heartbeat.json
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas       823 Dec  2 20:43 pilotlog.txt
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas   3845765 Dec  2 20:43 log.47556137._005017.job.log.1
[2025-12-02 20:43:04] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 20:43 boinc_mmap_file
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas       353 Dec  2 20:43 output.list
[2025-12-02 20:43:04] -rw-r--r--. 1 boincer umatlas        29 Dec  2 20:43 wrapper_checkpoint.txt
[2025-12-02 20:43:04] -rw-r--r--. 1 boincer umatlas       620 Dec  2 20:43 runtime_log
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas   5611520 Dec  2 20:43 result.tar.gz
[2025-12-02 20:43:04] -rw-r--r--. 1 boincer umatlas      9343 Dec  2 20:43 runtime_log.err
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas       666 Dec  2 20:43 lo0MDm5w9g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMPKKDmCYHOQm.diag
[2025-12-02 20:43:04] -rw-r--r--. 1 boincer umatlas     21873 Dec  2 20:43 stderr.txt
[2025-12-02 20:43:04] HITS file was successfully produced:
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas 938625487 Dec  2 20:40 shared/HITS.pool.root.1
[2025-12-02 20:43:04]  *** Contents of shared directory: ***
[2025-12-02 20:43:04] total 1323972
[2025-12-02 20:43:04] -rw-r--r--. 2 boincer umatlas 410893963 Dec  2 12:19 ATLAS.root_0
[2025-12-02 20:43:04] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 12:19 start_atlas.sh
[2025-12-02 20:43:04] -rw-r--r--. 2 boincer umatlas    590108 Dec  2 12:19 input.tar.gz
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas 938625487 Dec  2 20:40 HITS.pool.root.1
[2025-12-02 20:43:04] -rw-------. 1 boincer umatlas   5611520 Dec  2 20:43 result.tar.gz
20:43:06 (2518657): run_atlas exited; CPU time 140381.672316
20:43:06 (2518657): called boinc_finish(0)

</stderr_txt>
]]>

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