Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:34:45 (29851): wrapper (7.7.26015): starting
18:34:45 (29851): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 18:34:45] Arguments: --nthreads 8
[2025-12-02 18:34:45] Threads: 8
[2025-12-02 18:34:45] Checking for CVMFS
[2025-12-02 18:34:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:34:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:34:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:34:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:34:46] 2.11.0.0 4147 74495 106980 153564 2 76 2463387 4096001 1595 130560 2 7690870 99.515 7029655 637 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 18:34:46] CVMFS is ok
[2025-12-02 18:34:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 18:34:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 18:34:46] Further information can be found at the LHC@home message board.
[2025-12-02 18:34:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:34:46] Checking for apptainer binary...
[2025-12-02 18:34:46] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 18:34:46] apptainer is not installed, using version from CVMFS
[2025-12-02 18:34:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:34:46] WARNING: Environment variable TMPDIR already has value [/tmp/job_10944867/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node016
[2025-12-02 18:34:46] apptainer works
[2025-12-02 18:34:46] Set ATHENA_PROC_NUMBER=8
[2025-12-02 18:34:46] Set ATHENA_CORE_NUMBER=8
[2025-12-02 18:34:46] Starting ATLAS job with PandaID=6897833975
[2025-12-02 18:34:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10944867/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 22:23:36]  *** The last 200 lines of the pilot log: ***
[2025-12-02 22:23:36] 2025-12-02 21:23:02,713 | INFO     | time since job start (13691s) is within the limit (172800.0s)
[2025-12-02 22:23:36] 2025-12-02 21:23:03,869 | INFO     | PID=1386 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 22:23:36] 2025-12-02 21:23:03,869 | INFO     | .. there are 7 such processes running
[2025-12-02 22:23:36] 2025-12-02 21:23:04,118 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 22:23:36] 2025-12-02 21:23:04,122 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2973.329640625
[2025-12-02 22:23:36] 2025-12-02 21:23:04,128 | INFO     | using path: /tmp/job_10944867/atlas/pilot/slots/0/PanDA_Pilot-6897833975/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 22:23:36] 2025-12-02 21:23:04,128 | INFO     | extracted standard info from prmon json
[2025-12-02 22:23:36] 2025-12-02 21:23:04,128 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 22:23:36] 2025-12-02 21:23:04,128 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 22:23:36] 2025-12-02 21:23:04,130 | INFO     | fitting pss+swap vs Time
[2025-12-02 22:23:36] 2025-12-02 21:23:04,130 | INFO     | sum of square deviations: 3531973200.0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,131 | INFO     | sum of deviations: 69000612014.0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,131 | INFO     | mean x: 1764703742.0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,131 | INFO     | mean y: 3396417.1022222224
[2025-12-02 22:23:36] 2025-12-02 21:23:04,131 | INFO     | intersect: -34471847681.97417
[2025-12-02 22:23:36] 2025-12-02 21:23:04,131 | INFO     | chi2: 3.510223275795819
[2025-12-02 22:23:36] 2025-12-02 21:23:04,132 | INFO     | sum of square deviations: 3301699115.0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,132 | INFO     | sum of deviations: 127426296388.50006
[2025-12-02 22:23:36] 2025-12-02 21:23:04,132 | INFO     | mean x: 1764703589.5
[2025-12-02 22:23:36] 2025-12-02 21:23:04,132 | INFO     | mean y: 3434810.95
[2025-12-02 22:23:36] 2025-12-02 21:23:04,132 | INFO     | intersect: -68103813851.373055
[2025-12-02 22:23:36] 2025-12-02 21:23:04,132 | INFO     | chi2: 1.6111018062696063
[2025-12-02 22:23:36] 2025-12-02 21:23:04,133 | INFO     | current chi2=1.6111018062696063 (change=54.102583235126374 %)
[2025-12-02 22:23:36] 2025-12-02 21:23:04,133 | INFO     | sum of square deviations: 3081657780.0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,133 | INFO     | sum of deviations: 121113964569.00006
[2025-12-02 22:23:36] 2025-12-02 21:23:04,133 | INFO     | mean x: 1764703437.0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,133 | INFO     | mean y: 3430435.7813953487
[2025-12-02 22:23:36] 2025-12-02 21:23:04,133 | INFO     | intersect: -69352171257.1524
[2025-12-02 22:23:36] 2025-12-02 21:23:04,134 | INFO     | chi2: 1.611742555448815
[2025-12-02 22:23:36] 2025-12-02 21:23:04,134 | INFO     | current chi2=1.611742555448815 (change=-0.039770868402925694 %)
[2025-12-02 22:23:36] 2025-12-02 21:23:04,134 | INFO     | right removable region: 214
[2025-12-02 22:23:36] 2025-12-02 21:23:04,134 | INFO     | sum of square deviations: 3301699115.0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,135 | INFO     | sum of deviations: 18050258344.49999
[2025-12-02 22:23:36] 2025-12-02 21:23:04,135 | INFO     | mean x: 1764703894.5
[2025-12-02 22:23:36] 2025-12-02 21:23:04,135 | INFO     | mean y: 3429840.4136363636
[2025-12-02 22:23:36] 2025-12-02 21:23:04,135 | INFO     | intersect: -9644136484.620876
[2025-12-02 22:23:36] 2025-12-02 21:23:04,135 | INFO     | chi2: 1.9518589112067275
[2025-12-02 22:23:36] 2025-12-02 21:23:04,135 | INFO     | current chi2=1.9518589112067275 (change=44.39502111830158 %)
[2025-12-02 22:23:36] 2025-12-02 21:23:04,135 | INFO     | sum of square deviations: 3081657780.0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,136 | INFO     | sum of deviations: 10045172742.999996
[2025-12-02 22:23:36] 2025-12-02 21:23:04,136 | INFO     | mean x: 1764704047.0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,136 | INFO     | mean y: 3435375.9023255813
[2025-12-02 22:23:36] 2025-12-02 21:23:04,136 | INFO     | intersect: -5748909062.676505
[2025-12-02 22:23:36] 2025-12-02 21:23:04,136 | INFO     | chi2: 1.9418508119988194
[2025-12-02 22:23:36] 2025-12-02 21:23:04,136 | INFO     | current chi2=1.9418508119988194 (change=0.5127470612986401 %)
[2025-12-02 22:23:36] 2025-12-02 21:23:04,136 | INFO     | left removable region: 20
[2025-12-02 22:23:36] 2025-12-02 21:23:04,136 | INFO     | sum of square deviations: 2263977332.5
[2025-12-02 22:23:36] 2025-12-02 21:23:04,137 | INFO     | sum of deviations: 50699493304.50001
[2025-12-02 22:23:36] 2025-12-02 21:23:04,137 | INFO     | mean x: 1764704016.5
[2025-12-02 22:23:36] 2025-12-02 21:23:04,137 | INFO     | mean y: 3481184.963917526
[2025-12-02 22:23:36] 2025-12-02 21:23:04,137 | INFO     | intersect: -39515288806.50463
[2025-12-02 22:23:36] 2025-12-02 21:23:04,137 | INFO     | chi2: 0.003410467725531536
[2025-12-02 22:23:36] 2025-12-02 21:23:04,137 | INFO     | current memory leak: 22.39 B/s (using 194 data points, chi2=0.00)
[2025-12-02 22:23:36] 2025-12-02 21:23:04,137 | INFO     | could have reported an average CPU frequency of 3029 MHz (11 samples)
[2025-12-02 22:23:36] 2025-12-02 21:23:04,137 | INFO     | ..............................
[2025-12-02 22:23:36] 2025-12-02 21:23:04,137 | INFO     | . Timing measurements:
[2025-12-02 22:23:36] 2025-12-02 21:23:04,137 | INFO     | . get job = 0 s
[2025-12-02 22:23:36] 2025-12-02 21:23:04,137 | INFO     | . initial setup = 1 s
[2025-12-02 22:23:36] 2025-12-02 21:23:04,138 | INFO     | . payload setup = 4 s
[2025-12-02 22:23:36] 2025-12-02 21:23:04,138 | INFO     | . stage-in = 0 s
[2025-12-02 22:23:36] 2025-12-02 21:23:04,138 | INFO     | . payload execution = 13666 s
[2025-12-02 22:23:36] 2025-12-02 21:23:04,138 | INFO     | . stage-out = 1 s
[2025-12-02 22:23:36] 2025-12-02 21:23:04,138 | INFO     | . log creation = 0 s
[2025-12-02 22:23:36] 2025-12-02 21:23:04,138 | INFO     | ..............................
[2025-12-02 22:23:36] 2025-12-02 21:23:04,187 | INFO     | 
[2025-12-02 22:23:36] 2025-12-02 21:23:04,187 | INFO     | job summary report
[2025-12-02 22:23:36] 2025-12-02 21:23:04,187 | INFO     | --------------------------------------------------
[2025-12-02 22:23:36] 2025-12-02 21:23:04,187 | INFO     | PanDA job id: 6897833975
[2025-12-02 22:23:36] 2025-12-02 21:23:04,187 | INFO     | task id: 47530783
[2025-12-02 22:23:36] 2025-12-02 21:23:04,187 | INFO     | errors: (none)
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | pilot state: finished 
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | transexitcode: 0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | exeerrorcode: 0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | exeerrordiag: 
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | exitcode: 0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | exitmsg: OK
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | cpuconsumptiontime: 103118 s
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | nevents: 1000
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | neventsw: 0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | pid: 8912
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | pgrp: 8912
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | corecount: 8
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | event service: False
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | sizes: {0: 2283621, 1: 2284603, 3: 2284865, 11: 2284893, 13674: 2335299, 13675: 2344323, 13677: 2344507, 13681: 2344753}
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | --------------------------------------------------
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | 
[2025-12-02 22:23:36] 2025-12-02 21:23:04,188 | INFO     | executing command: ls -lF /tmp/job_10944867/atlas/pilot/slots/0
[2025-12-02 22:23:36] 2025-12-02 21:23:04,196 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | job 6897833975 has completed (purged errors)
[2025-12-02 22:23:36] 2025-12-02 21:23:04,197 | INFO     | overall cleanup function is called
[2025-12-02 22:23:36] 2025-12-02 21:23:05,205 | INFO     | --- collectZombieJob: --- 10, [8912]
[2025-12-02 22:23:36] 2025-12-02 21:23:05,205 | INFO     | zombie collector waiting for pid 8912
[2025-12-02 22:23:36] 2025-12-02 21:23:05,205 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 22:23:36] 2025-12-02 21:23:05,205 | INFO     | collected zombie processes
[2025-12-02 22:23:36] 2025-12-02 21:23:05,205 | INFO     | will attempt to kill all subprocesses of pid=8912
[2025-12-02 22:23:36] 2025-12-02 21:23:05,325 | INFO     | process IDs to be killed: [8912] (in reverse order)
[2025-12-02 22:23:36] 2025-12-02 21:23:05,370 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 22:23:36] 2025-12-02 21:23:05,371 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 22:23:36] 2025-12-02 21:23:05,375 | INFO     | did not find any defunct processes belonging to 8912
[2025-12-02 22:23:36] 2025-12-02 21:23:05,379 | INFO     | did not find any defunct processes belonging to 8912
[2025-12-02 22:23:36] 2025-12-02 21:23:05,379 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 22:23:36] 2025-12-02 21:23:05,379 | INFO     | ready for new job
[2025-12-02 22:23:36] 2025-12-02 21:23:05,379 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 22:23:36] 2025-12-02 21:23:05,380 | INFO     | ***************************************
[2025-12-02 22:23:36] 2025-12-02 21:23:05,380 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 22:23:36] 2025-12-02 21:23:05,380 | INFO     | ***************************************
[2025-12-02 22:23:36] 2025-12-02 21:23:05,380 | INFO     | 
[2025-12-02 22:23:36] 2025-12-02 21:23:05,395 | INFO     | architecture information:
[2025-12-02 22:23:36] 2025-12-02 21:23:05,395 | INFO     | executing command: cat /etc/os-release
[2025-12-02 22:23:36] 2025-12-02 21:23:05,401 | INFO     | cat /etc/os-release:
[2025-12-02 22:23:36] NAME="CentOS Linux"
[2025-12-02 22:23:36] VERSION="7 (Core)"
[2025-12-02 22:23:36] ID="centos"
[2025-12-02 22:23:36] ID_LIKE="rhel fedora"
[2025-12-02 22:23:36] VERSION_ID="7"
[2025-12-02 22:23:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 22:23:36] ANSI_COLOR="0;31"
[2025-12-02 22:23:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 22:23:36] HOME_URL="https://www.centos.org/"
[2025-12-02 22:23:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 22:23:36] 
[2025-12-02 22:23:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 22:23:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 22:23:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 22:23:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 22:23:36] 
[2025-12-02 22:23:36] 2025-12-02 21:23:05,401 | INFO     | ***************************************
[2025-12-02 22:23:36] 2025-12-02 21:23:05,904 | INFO     | executing command: df -mP /tmp/job_10944867/atlas/pilot/slots/0
[2025-12-02 22:23:36] 2025-12-02 21:23:05,910 | INFO     | sufficient remaining disk space (217968541696 B)
[2025-12-02 22:23:36] 2025-12-02 21:23:05,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 22:23:36] 2025-12-02 21:23:05,910 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 22:23:36] 2025-12-02 21:23:05,910 | INFO     | update_server=False
[2025-12-02 22:23:36] 2025-12-02 21:23:05,910 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 22:23:36] 2025-12-02 21:23:05,910 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 22:23:36] 2025-12-02 21:23:05,911 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 22:23:36] 2025-12-02 21:23:05,911 | INFO     | aborting loop
[2025-12-02 22:23:36] 2025-12-02 21:23:06,221 | INFO     | all payload control threads have been joined
[2025-12-02 22:23:36] 2025-12-02 21:23:06,277 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 22:23:36] 2025-12-02 21:23:06,744 | INFO     | all data control threads have been joined
[2025-12-02 22:23:36] 2025-12-02 21:23:06,916 | INFO     | [job] retrieve thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:06,916 | INFO     | [job] queue monitor thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:06,916 | INFO     | [job] job monitor thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:06,975 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:07,025 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 22:23:36] 2025-12-02 21:23:07,180 | INFO     | all job control threads have been joined
[2025-12-02 22:23:36] 2025-12-02 21:23:07,188 | INFO     | [data] copytool_in thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:07,226 | INFO     | [payload] control thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:07,292 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:07,610 | INFO     | [payload] failed_post thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:07,749 | INFO     | [data] control thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:08,114 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:08,158 | INFO     | [job] validate thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:08,185 | INFO     | [job] control thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:08,199 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:08,360 | INFO     | [payload] validate_post thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:09,030 | INFO     | [data] copytool_out thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:10,282 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 22:23:36] 2025-12-02 21:23:13,406 | INFO     | [monitor] cgroup control has ended
[2025-12-02 22:23:36] 2025-12-02 21:23:13,811 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-02 22:23:36] 2025-12-02 21:23:18,836 | INFO     | all workflow threads have been joined
[2025-12-02 22:23:36] 2025-12-02 21:23:18,836 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 22:23:36] 2025-12-02 21:23:18,836 | INFO     | traces error code: 0
[2025-12-02 22:23:36] 2025-12-02 21:23:18,836 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 22:23:36] 2025-12-02 21:23:36,072 | INFO     | PID=1386 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 22:23:36] 2025-12-02 21:23:36,072 | INFO     | .. there are 6 such processes running
[2025-12-02 22:23:36] 2025-12-02 21:23:36,073 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 22:23:36] 2025-12-02 21:23:36,073 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 22:23:36] 2025-12-02 21:23:36,073 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 22:23:36] 2025-12-02 21:23:36,073 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 22:23:36] 2025-12-02 21:23:36,073 | INFO     | [monitor] control thread has ended
[2025-12-02 22:23:36] 2025-12-02 21:23:36,125 [wrapper] ==== pilot stdout END ====
[2025-12-02 22:23:36] 2025-12-02 21:23:36,126 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 22:23:36] 2025-12-02 21:23:36,127 [wrapper] pilotpid: 1386
[2025-12-02 22:23:36] 2025-12-02 21:23:36,128 [wrapper] Pilot exit status: 0
[2025-12-02 22:23:36] 2025-12-02 21:23:36,132 [wrapper] pandaids: 6897833975
[2025-12-02 22:23:36] 2025-12-02 21:23:36,157 [wrapper] cleanup supervisor_pilot 12458 1387
[2025-12-02 22:23:36] 2025-12-02 21:23:36,158 [wrapper] Test setup, not cleaning
[2025-12-02 22:23:36] 2025-12-02 21:23:36,159 [wrapper] apfmon messages muted
[2025-12-02 22:23:36] 2025-12-02 21:23:36,160 [wrapper] ==== wrapper stdout END ====
[2025-12-02 22:23:36] 2025-12-02 21:23:36,161 [wrapper] ==== wrapper stderr END ====
[2025-12-02 22:23:36]  *** Error codes and diagnostics ***
[2025-12-02 22:23:36]     "exeErrorCode": 0,
[2025-12-02 22:23:36]     "exeErrorDiag": "",
[2025-12-02 22:23:36]     "pilotErrorCode": 0,
[2025-12-02 22:23:36]     "pilotErrorDiag": "",
[2025-12-02 22:23:36]  *** Listing of results directory ***
[2025-12-02 22:23:36] total 1071256
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user    576529 Nov 28 11:28 pilot3.tar.gz
[2025-12-02 22:23:36] -rwx------ 1 mf493845 unix-user     36292 Nov 28 11:32 runpilot2-wrapper.sh
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user      5112 Nov 28 11:33 queuedata.json
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user       100 Dec  2 16:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 22:23:36] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 16:58 run_atlas
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user       105 Dec  2 16:58 job.xml
[2025-12-02 22:23:36] -rw-r--r-- 2 mf493845 unix-user 376357273 Dec  2 18:34 EVNT.47530775._000031.pool.root.1
[2025-12-02 22:23:36] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:34 start_atlas.sh
[2025-12-02 22:23:36] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 18:34 shared
[2025-12-02 22:23:36] -rw-r--r-- 2 mf493845 unix-user    590117 Dec  2 18:34 input.tar.gz
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user      6391 Dec  2 18:34 init_data.xml
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user         0 Dec  2 18:34 boinc_setup_complete
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user      8192 Dec  2 18:34 boinc_mmap_file
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user         0 Dec  2 18:34 boinc_lockfile
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user      2878 Dec  2 18:34 pandaJob.out
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user    988858 Dec  2 18:34 agis_schedconf.cvmfs.json
[2025-12-02 22:23:36] drwx------ 5 mf493845 unix-user       440 Dec  2 18:34 pilot3
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user 709479657 Dec  2 22:22 HITS.47530783._000304.pool.root.1
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user      1025 Dec  2 22:22 memory_monitor_summary.json
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user   1516240 Dec  2 22:22 agis_ddmendpoints.agis.ALL.json
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user   1626051 Dec  2 22:22 log.47530783._000304.job.log.tgz.1
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user     27943 Dec  2 22:23 heartbeat.json
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user       819 Dec  2 22:23 pilotlog.txt
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user        95 Dec  2 22:23 pilot_heartbeat.json
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user   1981469 Dec  2 22:23 log.47530783._000304.job.log.1
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user       353 Dec  2 22:23 output.list
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user       620 Dec  2 22:23 runtime_log
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user   3645440 Dec  2 22:23 result.tar.gz
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user      9221 Dec  2 22:23 runtime_log.err
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user       649 Dec  2 22:23 qcyKDmFxAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqgOKDmXjX69m.diag
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user     21774 Dec  2 22:23 stderr.txt
[2025-12-02 22:23:36] HITS file was successfully produced:
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user 709479657 Dec  2 22:22 shared/HITS.pool.root.1
[2025-12-02 22:23:36]  *** Contents of shared directory: ***
[2025-12-02 22:23:36] total 1064548
[2025-12-02 22:23:36] -rw-r--r-- 2 mf493845 unix-user 376357273 Dec  2 18:34 ATLAS.root_0
[2025-12-02 22:23:36] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:34 start_atlas.sh
[2025-12-02 22:23:36] -rw-r--r-- 2 mf493845 unix-user    590117 Dec  2 18:34 input.tar.gz
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user 709479657 Dec  2 22:22 HITS.pool.root.1
[2025-12-02 22:23:36] -rw------- 1 mf493845 unix-user   3645440 Dec  2 22:23 result.tar.gz
22:23:37 (29851): run_atlas exited; CPU time 103283.652480
22:23:37 (29851): called boinc_finish(0)

</stderr_txt>
]]>

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