Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:47:40 (23523): wrapper (7.7.26015): starting
18:47:40 (23523): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 18:47:40] Arguments: --nthreads 8
[2025-12-02 18:47:40] Threads: 8
[2025-12-02 18:47:40] Checking for CVMFS
[2025-12-02 18:47:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:47:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:47:40] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:47:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:47:40] 2.11.0.0 3958 74770 95040 153564 0 89 3220455 4096001 2206 130560 2 7366345 99.528 6556811 621 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 18:47:40] CVMFS is ok
[2025-12-02 18:47:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 18:47:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 18:47:40] Further information can be found at the LHC@home message board.
[2025-12-02 18:47:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:47:40] Checking for apptainer binary...
[2025-12-02 18:47:40] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 18:47:40] apptainer is not installed, using version from CVMFS
[2025-12-02 18:47:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:47:41] WARNING: Environment variable TMPDIR already has value [/tmp/job_10944830/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node100
[2025-12-02 18:47:41] apptainer works
[2025-12-02 18:47:41] Set ATHENA_PROC_NUMBER=8
[2025-12-02 18:47:41] Set ATHENA_CORE_NUMBER=8
[2025-12-02 18:47:41] Starting ATLAS job with PandaID=6900989008
[2025-12-02 18:47:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10944830/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 23:11:30]  *** The last 200 lines of the pilot log: ***
[2025-12-02 23:11:30] 2025-12-02 22:10:56,867 | INFO     | monitor loop #1154: job 0:6900989008 is in state 'finished'
[2025-12-02 23:11:30] 2025-12-02 22:10:56,868 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 23:11:30] 2025-12-02 22:10:57,462 | INFO     | time since job start (15791s) is within the limit (172800.0s)
[2025-12-02 23:11:30] 2025-12-02 22:10:58,196 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 23:11:30] 2025-12-02 22:10:58,200 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2989.137203125
[2025-12-02 23:11:30] 2025-12-02 22:10:58,205 | INFO     | using path: /tmp/job_10944830/atlas/pilot/slots/0/PanDA_Pilot-6900989008/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 23:11:30] 2025-12-02 22:10:58,206 | INFO     | extracted standard info from prmon json
[2025-12-02 23:11:30] 2025-12-02 22:10:58,206 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 23:11:30] 2025-12-02 22:10:58,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 23:11:30] 2025-12-02 22:10:58,208 | INFO     | fitting pss+swap vs Time
[2025-12-02 23:11:30] 2025-12-02 22:10:58,208 | INFO     | sum of square deviations: 5387301010.0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,209 | INFO     | sum of deviations: 147946394652.00003
[2025-12-02 23:11:30] 2025-12-02 22:10:58,209 | INFO     | mean x: 1764705554.0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,209 | INFO     | mean y: 2889280.9150579153
[2025-12-02 23:11:30] 2025-12-02 22:10:58,209 | INFO     | intersect: -48459564153.93773
[2025-12-02 23:11:30] 2025-12-02 22:10:58,210 | INFO     | chi2: 3.1310833700619005
[2025-12-02 23:11:30] 2025-12-02 22:10:58,210 | INFO     | sum of square deviations: 5081276667.5
[2025-12-02 23:11:30] 2025-12-02 22:10:58,211 | INFO     | sum of deviations: 183736458795.00003
[2025-12-02 23:11:30] 2025-12-02 22:10:58,211 | INFO     | mean x: 1764705401.5
[2025-12-02 23:11:30] 2025-12-02 22:10:58,211 | INFO     | mean y: 2906924.31496063
[2025-12-02 23:11:30] 2025-12-02 22:10:58,211 | INFO     | intersect: -63807970243.99044
[2025-12-02 23:11:30] 2025-12-02 22:10:58,211 | INFO     | chi2: 1.9794921498290503
[2025-12-02 23:11:30] 2025-12-02 22:10:58,211 | INFO     | current chi2=1.9794921498290503 (change=36.779321535922044 %)
[2025-12-02 23:11:30] 2025-12-02 22:10:58,211 | INFO     | sum of square deviations: 4787066500.0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,212 | INFO     | sum of deviations: 176901262639.0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,212 | INFO     | mean x: 1764705249.0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,212 | INFO     | mean y: 2903381.62248996
[2025-12-02 23:11:30] 2025-12-02 22:10:58,212 | INFO     | intersect: -65210017043.39582
[2025-12-02 23:11:30] 2025-12-02 22:10:58,212 | INFO     | chi2: 1.9779857515015535
[2025-12-02 23:11:30] 2025-12-02 22:10:58,213 | INFO     | current chi2=1.9779857515015535 (change=0.07610024256104601 %)
[2025-12-02 23:11:30] 2025-12-02 22:10:58,213 | INFO     | right removable region: 248
[2025-12-02 23:11:30] 2025-12-02 22:10:58,213 | INFO     | sum of square deviations: 5081276667.5
[2025-12-02 23:11:30] 2025-12-02 22:10:58,214 | INFO     | sum of deviations: 85968921990.0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,214 | INFO     | mean x: 1764705706.5
[2025-12-02 23:11:30] 2025-12-02 22:10:58,214 | INFO     | mean y: 2919973.3385826773
[2025-12-02 23:11:30] 2025-12-02 22:10:58,214 | INFO     | intersect: -29853719832.90286
[2025-12-02 23:11:30] 2025-12-02 22:10:58,214 | INFO     | chi2: 1.2161394472188611
[2025-12-02 23:11:30] 2025-12-02 22:10:58,214 | INFO     | current chi2=1.2161394472188611 (change=61.159148336736294 %)
[2025-12-02 23:11:30] 2025-12-02 22:10:58,214 | INFO     | sum of square deviations: 4787066500.0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,215 | INFO     | sum of deviations: 73226414403.00002
[2025-12-02 23:11:30] 2025-12-02 22:10:58,215 | INFO     | mean x: 1764705859.0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,215 | INFO     | mean y: 2926572.4658634537
[2025-12-02 23:11:30] 2025-12-02 22:10:58,215 | INFO     | intersect: -26991284293.52819
[2025-12-02 23:11:30] 2025-12-02 22:10:58,215 | INFO     | chi2: 1.1947831711643462
[2025-12-02 23:11:30] 2025-12-02 22:10:58,215 | INFO     | current chi2=1.1947831711643462 (change=1.7560713208796688 %)
[2025-12-02 23:11:30] 2025-12-02 22:10:58,215 | INFO     | left removable region: 20
[2025-12-02 23:11:30] 2025-12-02 22:10:58,216 | INFO     | sum of square deviations: 3675146117.0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,216 | INFO     | sum of deviations: 84741348016.49998
[2025-12-02 23:11:30] 2025-12-02 22:10:58,216 | INFO     | mean x: 1764705828.5
[2025-12-02 23:11:30] 2025-12-02 22:10:58,216 | INFO     | mean y: 2953198.785087719
[2025-12-02 23:11:30] 2025-12-02 22:10:58,216 | INFO     | intersect: -40687551613.50683
[2025-12-02 23:11:30] 2025-12-02 22:10:58,217 | INFO     | chi2: 0.015227845277388664
[2025-12-02 23:11:30] 2025-12-02 22:10:58,217 | INFO     | current memory leak: 23.06 B/s (using 228 data points, chi2=0.02)
[2025-12-02 23:11:30] 2025-12-02 22:10:58,217 | INFO     | could have reported an average CPU frequency of 3044 MHz (12 samples)
[2025-12-02 23:11:30] 2025-12-02 22:10:58,217 | INFO     | ..............................
[2025-12-02 23:11:30] 2025-12-02 22:10:58,217 | INFO     | . Timing measurements:
[2025-12-02 23:11:30] 2025-12-02 22:10:58,217 | INFO     | . get job = 0 s
[2025-12-02 23:11:30] 2025-12-02 22:10:58,217 | INFO     | . initial setup = 1 s
[2025-12-02 23:11:30] 2025-12-02 22:10:58,217 | INFO     | . payload setup = 2 s
[2025-12-02 23:11:30] 2025-12-02 22:10:58,217 | INFO     | . stage-in = 0 s
[2025-12-02 23:11:30] 2025-12-02 22:10:58,217 | INFO     | . payload execution = 15766 s
[2025-12-02 23:11:30] 2025-12-02 22:10:58,217 | INFO     | . stage-out = 1 s
[2025-12-02 23:11:30] 2025-12-02 22:10:58,217 | INFO     | . log creation = 0 s
[2025-12-02 23:11:30] 2025-12-02 22:10:58,217 | INFO     | ..............................
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | 
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | job summary report
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | --------------------------------------------------
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | PanDA job id: 6900989008
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | task id: 47556185
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | errors: (none)
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | pilot state: finished 
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | transexitcode: 0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | exeerrorcode: 0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | exeerrordiag: 
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | exitcode: 0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | exitmsg: OK
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | cpuconsumptiontime: 119610 s
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | nevents: 1000
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | neventsw: 0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | pid: 16050
[2025-12-02 23:11:30] 2025-12-02 22:10:58,708 | INFO     | pgrp: 16050
[2025-12-02 23:11:30] 2025-12-02 22:10:58,709 | INFO     | corecount: 8
[2025-12-02 23:11:30] 2025-12-02 22:10:58,709 | INFO     | event service: False
[2025-12-02 23:11:30] 2025-12-02 22:10:58,709 | INFO     | sizes: {0: 2283482, 1: 2284464, 3: 2284726, 11: 2284754, 15772: 2316820, 15773: 2325844, 15777: 2326028, 15779: 2326274}
[2025-12-02 23:11:30] 2025-12-02 22:10:58,709 | INFO     | --------------------------------------------------
[2025-12-02 23:11:30] 2025-12-02 22:10:58,709 | INFO     | 
[2025-12-02 23:11:30] 2025-12-02 22:10:58,709 | INFO     | executing command: ls -lF /tmp/job_10944830/atlas/pilot/slots/0
[2025-12-02 23:11:30] 2025-12-02 22:10:58,717 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,717 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,717 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,717 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,717 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,717 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,717 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,717 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,717 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,717 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,717 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,717 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,718 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,718 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,718 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,718 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,718 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 23:11:30] 2025-12-02 22:10:58,718 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,718 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 23:11:30] 2025-12-02 22:10:58,718 | INFO     | job 6900989008 has completed (purged errors)
[2025-12-02 23:11:30] 2025-12-02 22:10:58,718 | INFO     | overall cleanup function is called
[2025-12-02 23:11:30] 2025-12-02 22:10:59,725 | INFO     | --- collectZombieJob: --- 10, [16050]
[2025-12-02 23:11:30] 2025-12-02 22:10:59,725 | INFO     | zombie collector waiting for pid 16050
[2025-12-02 23:11:30] 2025-12-02 22:10:59,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 23:11:30] 2025-12-02 22:10:59,725 | INFO     | collected zombie processes
[2025-12-02 23:11:30] 2025-12-02 22:10:59,725 | INFO     | will attempt to kill all subprocesses of pid=16050
[2025-12-02 23:11:30] 2025-12-02 22:10:59,842 | INFO     | process IDs to be killed: [16050] (in reverse order)
[2025-12-02 23:11:30] 2025-12-02 22:10:59,883 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 23:11:30] 2025-12-02 22:10:59,883 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 23:11:30] 2025-12-02 22:10:59,887 | INFO     | did not find any defunct processes belonging to 16050
[2025-12-02 23:11:30] 2025-12-02 22:10:59,891 | INFO     | did not find any defunct processes belonging to 16050
[2025-12-02 23:11:30] 2025-12-02 22:10:59,891 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 23:11:30] 2025-12-02 22:10:59,891 | INFO     | ready for new job
[2025-12-02 23:11:30] 2025-12-02 22:10:59,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 23:11:30] 2025-12-02 22:10:59,892 | INFO     | ***************************************
[2025-12-02 23:11:30] 2025-12-02 22:10:59,892 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 23:11:30] 2025-12-02 22:10:59,892 | INFO     | ***************************************
[2025-12-02 23:11:30] 2025-12-02 22:10:59,892 | INFO     | 
[2025-12-02 23:11:30] 2025-12-02 22:10:59,907 | INFO     | architecture information:
[2025-12-02 23:11:30] 2025-12-02 22:10:59,907 | INFO     | executing command: cat /etc/os-release
[2025-12-02 23:11:30] 2025-12-02 22:10:59,912 | INFO     | cat /etc/os-release:
[2025-12-02 23:11:30] NAME="CentOS Linux"
[2025-12-02 23:11:30] VERSION="7 (Core)"
[2025-12-02 23:11:30] ID="centos"
[2025-12-02 23:11:30] ID_LIKE="rhel fedora"
[2025-12-02 23:11:30] VERSION_ID="7"
[2025-12-02 23:11:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 23:11:30] ANSI_COLOR="0;31"
[2025-12-02 23:11:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 23:11:30] HOME_URL="https://www.centos.org/"
[2025-12-02 23:11:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 23:11:30] 
[2025-12-02 23:11:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 23:11:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 23:11:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 23:11:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 23:11:30] 
[2025-12-02 23:11:30] 2025-12-02 22:10:59,912 | INFO     | ***************************************
[2025-12-02 23:11:30] 2025-12-02 22:11:00,415 | INFO     | executing command: df -mP /tmp/job_10944830/atlas/pilot/slots/0
[2025-12-02 23:11:30] 2025-12-02 22:11:00,421 | INFO     | sufficient remaining disk space (218176159744 B)
[2025-12-02 23:11:30] 2025-12-02 22:11:00,421 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 23:11:30] 2025-12-02 22:11:00,421 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 23:11:30] 2025-12-02 22:11:00,421 | INFO     | update_server=False
[2025-12-02 23:11:30] 2025-12-02 22:11:00,421 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 23:11:30] 2025-12-02 22:11:00,421 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:11:30] 2025-12-02 22:11:00,421 | INFO     | aborting loop
[2025-12-02 23:11:30] 2025-12-02 22:11:00,636 | INFO     | all job control threads have been joined
[2025-12-02 23:11:30] 2025-12-02 22:11:01,021 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 23:11:30] 2025-12-02 22:11:01,425 | INFO     | [job] job monitor thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:01,426 | INFO     | [job] retrieve thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:01,432 | INFO     | all payload control threads have been joined
[2025-12-02 23:11:30] 2025-12-02 22:11:01,517 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:01,519 | INFO     | all data control threads have been joined
[2025-12-02 23:11:30] 2025-12-02 22:11:01,567 | INFO     | [payload] failed_post thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:01,575 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:01,580 | INFO     | [job] validate thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:01,580 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:01,638 | INFO     | [job] control thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:02,359 | INFO     | [data] copytool_in thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:02,395 | INFO     | [payload] validate_post thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:02,419 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 23:11:30] 2025-12-02 22:11:02,437 | INFO     | [payload] control thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:02,524 | INFO     | [data] control thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:02,634 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:03,026 | INFO     | [data] copytool_out thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:03,276 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:11:30] 2025-12-02 22:11:04,281 | INFO     | [job] queue monitor thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:06,425 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 23:11:30] 2025-12-02 22:11:12,936 | INFO     | [monitor] cgroup control has ended
[2025-12-02 23:11:30] 2025-12-02 22:11:14,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-02 23:11:30] 2025-12-02 22:11:19,090 | INFO     | all workflow threads have been joined
[2025-12-02 23:11:30] 2025-12-02 22:11:19,091 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 23:11:30] 2025-12-02 22:11:19,091 | INFO     | traces error code: 0
[2025-12-02 23:11:30] 2025-12-02 22:11:19,091 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 23:11:30] 2025-12-02 22:11:30,667 | INFO     | PID=2703 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 23:11:30] 2025-12-02 22:11:30,668 | INFO     | .. there are 6 such processes running
[2025-12-02 23:11:30] 2025-12-02 22:11:30,668 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 23:11:30] 2025-12-02 22:11:30,668 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 23:11:30] 2025-12-02 22:11:30,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 23:11:30] 2025-12-02 22:11:30,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 23:11:30] 2025-12-02 22:11:30,668 | INFO     | [monitor] control thread has ended
[2025-12-02 23:11:30] 2025-12-02 22:11:30,721 [wrapper] ==== pilot stdout END ====
[2025-12-02 23:11:30] 2025-12-02 22:11:30,722 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 23:11:30] 2025-12-02 22:11:30,723 [wrapper] pilotpid: 2703
[2025-12-02 23:11:30] 2025-12-02 22:11:30,724 [wrapper] Pilot exit status: 0
[2025-12-02 23:11:30] 2025-12-02 22:11:30,728 [wrapper] pandaids: 6900989008
[2025-12-02 23:11:30] 2025-12-02 22:11:30,754 [wrapper] cleanup supervisor_pilot 25117 2704
[2025-12-02 23:11:30] 2025-12-02 22:11:30,756 [wrapper] Test setup, not cleaning
[2025-12-02 23:11:30] 2025-12-02 22:11:30,757 [wrapper] apfmon messages muted
[2025-12-02 23:11:30] 2025-12-02 22:11:30,758 [wrapper] ==== wrapper stdout END ====
[2025-12-02 23:11:30] 2025-12-02 22:11:30,759 [wrapper] ==== wrapper stderr END ====
[2025-12-02 23:11:30]  *** Error codes and diagnostics ***
[2025-12-02 23:11:30]     "exeErrorCode": 0,
[2025-12-02 23:11:30]     "exeErrorDiag": "",
[2025-12-02 23:11:30]     "pilotErrorCode": 0,
[2025-12-02 23:11:30]     "pilotErrorDiag": "",
[2025-12-02 23:11:30]  *** Listing of results directory ***
[2025-12-02 23:11:30] total 1298224
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user    576529 Nov 28 01:58 pilot3.tar.gz
[2025-12-02 23:11:30] -rwx------ 1 mf493845 unix-user     36292 Nov 28 02:00 runpilot2-wrapper.sh
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user      5112 Nov 28 02:04 queuedata.json
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user       100 Dec  2 17:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 23:11:30] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 17:03 run_atlas
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user       105 Dec  2 17:03 job.xml
[2025-12-02 23:11:30] -rw-r--r-- 2 mf493845 unix-user 407632752 Dec  2 18:47 EVNT.47483658._004524.pool.root.1
[2025-12-02 23:11:30] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:47 start_atlas.sh
[2025-12-02 23:11:30] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 18:47 shared
[2025-12-02 23:11:30] -rw-r--r-- 2 mf493845 unix-user    590108 Dec  2 18:47 input.tar.gz
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user      6392 Dec  2 18:47 init_data.xml
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user         0 Dec  2 18:47 boinc_setup_complete
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user      8192 Dec  2 18:47 boinc_mmap_file
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user         0 Dec  2 18:47 boinc_lockfile
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user      2784 Dec  2 18:47 pandaJob.out
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user    988858 Dec  2 18:47 agis_schedconf.cvmfs.json
[2025-12-02 23:11:30] drwx------ 5 mf493845 unix-user       440 Dec  2 18:47 pilot3
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user 910184766 Dec  2 23:10 HITS.47556185._002871.pool.root.1
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user        95 Dec  2 23:10 pilot_heartbeat.json
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user      1032 Dec  2 23:10 memory_monitor_summary.json
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user   1516240 Dec  2 23:10 agis_ddmendpoints.agis.ALL.json
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user   1556128 Dec  2 23:10 log.47556185._002871.job.log.tgz.1
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user      8568 Dec  2 23:10 heartbeat.json
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user       819 Dec  2 23:11 pilotlog.txt
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user   2281789 Dec  2 23:11 log.47556185._002871.job.log.1
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user       353 Dec  2 23:11 output.list
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user       620 Dec  2 23:11 runtime_log
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user   3860480 Dec  2 23:11 result.tar.gz
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user       650 Dec  2 23:11 Ti3MDmA21i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmg4KKDmfqnlfn.diag
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user      9221 Dec  2 23:11 runtime_log.err
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user     21721 Dec  2 23:11 stderr.txt
[2025-12-02 23:11:30] HITS file was successfully produced:
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user 910184766 Dec  2 23:10 shared/HITS.pool.root.1
[2025-12-02 23:11:30]  *** Contents of shared directory: ***
[2025-12-02 23:11:30] total 1291304
[2025-12-02 23:11:30] -rw-r--r-- 2 mf493845 unix-user 407632752 Dec  2 18:47 ATLAS.root_0
[2025-12-02 23:11:30] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:47 start_atlas.sh
[2025-12-02 23:11:30] -rw-r--r-- 2 mf493845 unix-user    590108 Dec  2 18:47 input.tar.gz
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user 910184766 Dec  2 23:10 HITS.pool.root.1
[2025-12-02 23:11:30] -rw------- 1 mf493845 unix-user   3860480 Dec  2 23:11 result.tar.gz
23:11:32 (23523): run_atlas exited; CPU time 119800.801697
23:11:32 (23523): called boinc_finish(0)

</stderr_txt>
]]>

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