Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:49:08 (29029): wrapper (7.7.26015): starting
18:49:08 (29029): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 18:49:08] Arguments: --nthreads 8
[2025-12-02 18:49:08] Threads: 8
[2025-12-02 18:49:08] Checking for CVMFS
[2025-12-02 18:49:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:49:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:49:08] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:49:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:49:08] 2.11.0.0 4230 74294 94072 153564 1 110 2207689 4096000 2768 130560 1 6589658 99.514 4962191 483 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 18:49:08] CVMFS is ok
[2025-12-02 18:49:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 18:49:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 18:49:08] Further information can be found at the LHC@home message board.
[2025-12-02 18:49:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:49:08] Checking for apptainer binary...
[2025-12-02 18:49:08] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 18:49:08] apptainer is not installed, using version from CVMFS
[2025-12-02 18:49:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:49:08] WARNING: Environment variable TMPDIR already has value [/tmp/job_10944838/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node163
[2025-12-02 18:49:08] apptainer works
[2025-12-02 18:49:08] Set ATHENA_PROC_NUMBER=8
[2025-12-02 18:49:08] Set ATHENA_CORE_NUMBER=8
[2025-12-02 18:49:08] Starting ATLAS job with PandaID=6893859031
[2025-12-02 18:49:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10944838/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 23:12:48]  *** The last 200 lines of the pilot log: ***
[2025-12-02 23:12:48] 2025-12-02 22:12:14,579 | INFO     | executing command: lscpu
[2025-12-02 23:12:48] 2025-12-02 22:12:14,610 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-02 23:12:48] 2025-12-02 22:12:14,691 | INFO     | time since job start (15781s) is within the limit (172800.0s)
[2025-12-02 23:12:48] 2025-12-02 22:12:16,257 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 23:12:48] 2025-12-02 22:12:16,274 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2597.06178125
[2025-12-02 23:12:48] 2025-12-02 22:12:16,279 | INFO     | using path: /tmp/job_10944838/atlas/pilot/slots/0/PanDA_Pilot-6893859031/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 23:12:48] 2025-12-02 22:12:16,280 | INFO     | extracted standard info from prmon json
[2025-12-02 23:12:48] 2025-12-02 22:12:16,280 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 23:12:48] 2025-12-02 22:12:16,280 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 23:12:48] 2025-12-02 22:12:16,282 | INFO     | fitting pss+swap vs Time
[2025-12-02 23:12:48] 2025-12-02 22:12:16,282 | INFO     | sum of square deviations: 5387301010.0
[2025-12-02 23:12:48] 2025-12-02 22:12:16,283 | INFO     | sum of deviations: 108033576945.00006
[2025-12-02 23:12:48] 2025-12-02 22:12:16,283 | INFO     | mean x: 1764705641.0
[2025-12-02 23:12:48] 2025-12-02 22:12:16,284 | INFO     | mean y: 2894554.644787645
[2025-12-02 23:12:48] 2025-12-02 22:12:16,284 | INFO     | intersect: -35385412558.391235
[2025-12-02 23:12:48] 2025-12-02 22:12:16,284 | INFO     | chi2: 3.112833930481849
[2025-12-02 23:12:48] 2025-12-02 22:12:16,284 | INFO     | sum of square deviations: 5081276667.5
[2025-12-02 23:12:48] 2025-12-02 22:12:16,285 | INFO     | sum of deviations: 158119758986.5
[2025-12-02 23:12:48] 2025-12-02 22:12:16,285 | INFO     | mean x: 1764705488.5
[2025-12-02 23:12:48] 2025-12-02 22:12:16,285 | INFO     | mean y: 2919300.55511811
[2025-12-02 23:12:48] 2025-12-02 22:12:16,285 | INFO     | intersect: -54911391567.122856
[2025-12-02 23:12:48] 2025-12-02 22:12:16,285 | INFO     | chi2: 1.423828679379153
[2025-12-02 23:12:48] 2025-12-02 22:12:16,285 | INFO     | current chi2=1.423828679379153 (change=54.25940762735285 %)
[2025-12-02 23:12:48] 2025-12-02 22:12:16,285 | INFO     | sum of square deviations: 4787066500.0
[2025-12-02 23:12:48] 2025-12-02 22:12:16,286 | INFO     | sum of deviations: 151582883178.00003
[2025-12-02 23:12:48] 2025-12-02 22:12:16,286 | INFO     | mean x: 1764705336.0
[2025-12-02 23:12:48] 2025-12-02 22:12:16,286 | INFO     | mean y: 2915912.6024096385
[2025-12-02 23:12:48] 2025-12-02 22:12:16,286 | INFO     | intersect: -55876634285.93385
[2025-12-02 23:12:48] 2025-12-02 22:12:16,287 | INFO     | chi2: 1.4231396921999024
[2025-12-02 23:12:48] 2025-12-02 22:12:16,287 | INFO     | current chi2=1.4231396921999024 (change=0.04838975287047982 %)
[2025-12-02 23:12:48] 2025-12-02 22:12:16,287 | INFO     | right removable region: 248
[2025-12-02 23:12:48] 2025-12-02 22:12:16,287 | INFO     | sum of square deviations: 5081276667.5
[2025-12-02 23:12:48] 2025-12-02 22:12:16,288 | INFO     | sum of deviations: 60585303364.5
[2025-12-02 23:12:48] 2025-12-02 22:12:16,288 | INFO     | mean x: 1764705793.5
[2025-12-02 23:12:48] 2025-12-02 22:12:16,288 | INFO     | mean y: 2918008.153543307
[2025-12-02 23:12:48] 2025-12-02 22:12:16,288 | INFO     | intersect: -21038100390.258274
[2025-12-02 23:12:48] 2025-12-02 22:12:16,288 | INFO     | chi2: 1.7471954579346693
[2025-12-02 23:12:48] 2025-12-02 22:12:16,288 | INFO     | current chi2=1.7471954579346693 (change=43.87122805281767 %)
[2025-12-02 23:12:48] 2025-12-02 22:12:16,288 | INFO     | sum of square deviations: 4787066500.0
[2025-12-02 23:12:48] 2025-12-02 22:12:16,289 | INFO     | sum of deviations: 49823602448.00013
[2025-12-02 23:12:48] 2025-12-02 22:12:16,289 | INFO     | mean x: 1764705946.0
[2025-12-02 23:12:48] 2025-12-02 22:12:16,289 | INFO     | mean y: 2923582.012048193
[2025-12-02 23:12:48] 2025-12-02 22:12:16,289 | INFO     | intersect: -18364067453.338306
[2025-12-02 23:12:48] 2025-12-02 22:12:16,289 | INFO     | chi2: 1.7322080851666626
[2025-12-02 23:12:48] 2025-12-02 22:12:16,289 | INFO     | current chi2=1.7322080851666626 (change=0.8577960010108481 %)
[2025-12-02 23:12:48] 2025-12-02 22:12:16,290 | INFO     | left removable region: 20
[2025-12-02 23:12:48] 2025-12-02 22:12:16,290 | INFO     | sum of square deviations: 3675146117.0
[2025-12-02 23:12:48] 2025-12-02 22:12:16,290 | INFO     | sum of deviations: 76577505218.00002
[2025-12-02 23:12:48] 2025-12-02 22:12:16,290 | INFO     | mean x: 1764705915.5
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | mean y: 2956354.4736842103
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | intersect: -36767493622.28754
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | chi2: 0.014763135125294598
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | current memory leak: 20.84 B/s (using 228 data points, chi2=0.01)
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | could have reported an average CPU frequency of 2886 MHz (12 samples)
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | ..............................
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | . Timing measurements:
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | . get job = 0 s
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | . initial setup = 1 s
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | . payload setup = 2 s
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | . stage-in = 0 s
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | . payload execution = 15757 s
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | . stage-out = 1 s
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | . log creation = 0 s
[2025-12-02 23:12:48] 2025-12-02 22:12:16,291 | INFO     | ..............................
[2025-12-02 23:12:48] 2025-12-02 22:12:16,340 | INFO     | 
[2025-12-02 23:12:48] 2025-12-02 22:12:16,340 | INFO     | job summary report
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | --------------------------------------------------
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | PanDA job id: 6893859031
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | task id: 47523449
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | errors: (none)
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | pilot state: finished 
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | transexitcode: 0
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | exeerrorcode: 0
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | exeerrordiag: 
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | exitcode: 0
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | exitmsg: OK
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | cpuconsumptiontime: 119736 s
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | nevents: 1000
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | neventsw: 0
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | pid: 25304
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | pgrp: 25304
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | corecount: 8
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | event service: False
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | sizes: {0: 2284441, 2: 2284703, 11: 2284731, 15762: 2317065, 15763: 2317064, 15764: 2326144, 15767: 2326328, 15769: 2326574}
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | --------------------------------------------------
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | 
[2025-12-02 23:12:48] 2025-12-02 22:12:16,341 | INFO     | executing command: ls -lF /tmp/job_10944838/atlas/pilot/slots/0
[2025-12-02 23:12:48] 2025-12-02 22:12:16,350 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,350 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,350 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,350 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,350 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,350 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,350 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,350 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,350 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,350 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,350 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,350 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,350 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,351 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,351 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,351 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,351 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,351 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 23:12:48] 2025-12-02 22:12:16,351 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,351 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 23:12:48] 2025-12-02 22:12:16,351 | INFO     | job 6893859031 has completed (purged errors)
[2025-12-02 23:12:48] 2025-12-02 22:12:16,351 | INFO     | overall cleanup function is called
[2025-12-02 23:12:48] 2025-12-02 22:12:17,358 | INFO     | --- collectZombieJob: --- 10, [25304]
[2025-12-02 23:12:48] 2025-12-02 22:12:17,358 | INFO     | zombie collector waiting for pid 25304
[2025-12-02 23:12:48] 2025-12-02 22:12:17,358 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 23:12:48] 2025-12-02 22:12:17,359 | INFO     | collected zombie processes
[2025-12-02 23:12:48] 2025-12-02 22:12:17,359 | INFO     | will attempt to kill all subprocesses of pid=25304
[2025-12-02 23:12:48] 2025-12-02 22:12:17,463 | INFO     | process IDs to be killed: [25304] (in reverse order)
[2025-12-02 23:12:48] 2025-12-02 22:12:17,501 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 23:12:48] 2025-12-02 22:12:17,501 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 23:12:48] 2025-12-02 22:12:17,505 | INFO     | did not find any defunct processes belonging to 25304
[2025-12-02 23:12:48] 2025-12-02 22:12:17,508 | INFO     | did not find any defunct processes belonging to 25304
[2025-12-02 23:12:48] 2025-12-02 22:12:17,508 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 23:12:48] 2025-12-02 22:12:17,509 | INFO     | ready for new job
[2025-12-02 23:12:48] 2025-12-02 22:12:17,509 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 23:12:48] 2025-12-02 22:12:17,510 | INFO     | ***************************************
[2025-12-02 23:12:48] 2025-12-02 22:12:17,510 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 23:12:48] 2025-12-02 22:12:17,510 | INFO     | ***************************************
[2025-12-02 23:12:48] 2025-12-02 22:12:17,510 | INFO     | 
[2025-12-02 23:12:48] 2025-12-02 22:12:17,524 | INFO     | architecture information:
[2025-12-02 23:12:48] 2025-12-02 22:12:17,524 | INFO     | executing command: cat /etc/os-release
[2025-12-02 23:12:48] 2025-12-02 22:12:17,530 | INFO     | cat /etc/os-release:
[2025-12-02 23:12:48] NAME="CentOS Linux"
[2025-12-02 23:12:48] VERSION="7 (Core)"
[2025-12-02 23:12:48] ID="centos"
[2025-12-02 23:12:48] ID_LIKE="rhel fedora"
[2025-12-02 23:12:48] VERSION_ID="7"
[2025-12-02 23:12:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 23:12:48] ANSI_COLOR="0;31"
[2025-12-02 23:12:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 23:12:48] HOME_URL="https://www.centos.org/"
[2025-12-02 23:12:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 23:12:48] 
[2025-12-02 23:12:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 23:12:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 23:12:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 23:12:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 23:12:48] 
[2025-12-02 23:12:48] 2025-12-02 22:12:17,530 | INFO     | ***************************************
[2025-12-02 23:12:48] 2025-12-02 22:12:18,033 | INFO     | executing command: df -mP /tmp/job_10944838/atlas/pilot/slots/0
[2025-12-02 23:12:48] 2025-12-02 22:12:18,040 | INFO     | sufficient remaining disk space (220293234688 B)
[2025-12-02 23:12:48] 2025-12-02 22:12:18,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 23:12:48] 2025-12-02 22:12:18,041 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 23:12:48] 2025-12-02 22:12:18,041 | INFO     | update_server=False
[2025-12-02 23:12:48] 2025-12-02 22:12:18,041 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 23:12:48] 2025-12-02 22:12:18,041 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:12:48] 2025-12-02 22:12:18,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:12:48] 2025-12-02 22:12:18,041 | INFO     | aborting loop
[2025-12-02 23:12:48] 2025-12-02 22:12:18,248 | INFO     | all data control threads have been joined
[2025-12-02 23:12:48] 2025-12-02 22:12:18,521 | INFO     | all job control threads have been joined
[2025-12-02 23:12:48] 2025-12-02 22:12:18,773 | INFO     | all payload control threads have been joined
[2025-12-02 23:12:48] 2025-12-02 22:12:19,046 | INFO     | [job] retrieve thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:19,046 | INFO     | [job] queue monitor thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:19,046 | INFO     | [job] job monitor thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:19,097 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 23:12:48] 2025-12-02 22:12:19,253 | INFO     | [data] control thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:19,261 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:19,526 | INFO     | [job] control thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:19,664 | INFO     | [data] copytool_in thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:19,778 | INFO     | [payload] control thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:19,820 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:19,911 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 23:12:48] 2025-12-02 22:12:20,123 | INFO     | [payload] failed_post thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:20,132 | INFO     | [job] validate thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:20,322 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:20,427 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:20,465 | INFO     | [payload] validate_post thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:21,102 | INFO     | [data] copytool_out thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:23,916 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 23:12:48] 2025-12-02 22:12:39,713 | INFO     | [monitor] cgroup control has ended
[2025-12-02 23:12:48] 2025-12-02 22:12:40,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-02 23:12:48] 2025-12-02 22:12:45,744 | INFO     | all workflow threads have been joined
[2025-12-02 23:12:48] 2025-12-02 22:12:45,744 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 23:12:48] 2025-12-02 22:12:45,744 | INFO     | traces error code: 0
[2025-12-02 23:12:48] 2025-12-02 22:12:45,744 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 23:12:48] 2025-12-02 22:12:47,886 | INFO     | PID=3906 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 23:12:48] 2025-12-02 22:12:47,886 | INFO     | .. there are 3 such processes running
[2025-12-02 23:12:48] 2025-12-02 22:12:47,886 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 23:12:48] 2025-12-02 22:12:47,886 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 23:12:48] 2025-12-02 22:12:47,886 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 23:12:48] 2025-12-02 22:12:47,886 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 23:12:48] 2025-12-02 22:12:47,886 | INFO     | [monitor] control thread has ended
[2025-12-02 23:12:48] 2025-12-02 22:12:47,941 [wrapper] ==== pilot stdout END ====
[2025-12-02 23:12:48] 2025-12-02 22:12:47,942 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 23:12:48] 2025-12-02 22:12:47,944 [wrapper] pilotpid: 3906
[2025-12-02 23:12:48] 2025-12-02 22:12:47,945 [wrapper] Pilot exit status: 0
[2025-12-02 23:12:48] 2025-12-02 22:12:47,948 [wrapper] pandaids: 6893859031
[2025-12-02 23:12:48] 2025-12-02 22:12:47,974 [wrapper] cleanup supervisor_pilot 16512 3907
[2025-12-02 23:12:48] 2025-12-02 22:12:47,975 [wrapper] Test setup, not cleaning
[2025-12-02 23:12:48] 2025-12-02 22:12:47,976 [wrapper] apfmon messages muted
[2025-12-02 23:12:48] 2025-12-02 22:12:47,977 [wrapper] ==== wrapper stdout END ====
[2025-12-02 23:12:48] 2025-12-02 22:12:47,978 [wrapper] ==== wrapper stderr END ====
[2025-12-02 23:12:48]  *** Error codes and diagnostics ***
[2025-12-02 23:12:48]     "exeErrorCode": 0,
[2025-12-02 23:12:48]     "exeErrorDiag": "",
[2025-12-02 23:12:48]     "pilotErrorCode": 0,
[2025-12-02 23:12:48]     "pilotErrorDiag": "",
[2025-12-02 23:12:48]  *** Listing of results directory ***
[2025-12-02 23:12:48] total 1307116
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user    576529 Nov 20 14:12 pilot3.tar.gz
[2025-12-02 23:12:48] -rwx------ 1 mf493845 unix-user     36292 Nov 20 14:28 runpilot2-wrapper.sh
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user      5112 Nov 20 14:28 queuedata.json
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user       100 Dec  2 17:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 23:12:48] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 17:04 run_atlas
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user       105 Dec  2 17:04 job.xml
[2025-12-02 23:12:48] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:49 start_atlas.sh
[2025-12-02 23:12:48] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 18:49 shared
[2025-12-02 23:12:48] -rw-r--r-- 2 mf493845 unix-user    590098 Dec  2 18:49 input.tar.gz
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user      6392 Dec  2 18:49 init_data.xml
[2025-12-02 23:12:48] -rw-r--r-- 2 mf493845 unix-user 409156522 Dec  2 18:49 EVNT.47493127._000528.pool.root.1
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user         0 Dec  2 18:49 boinc_setup_complete
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user      8192 Dec  2 18:49 boinc_mmap_file
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user         0 Dec  2 18:49 boinc_lockfile
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user      2786 Dec  2 18:49 pandaJob.out
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user    988858 Dec  2 18:49 agis_schedconf.cvmfs.json
[2025-12-02 23:12:48] drwx------ 5 mf493845 unix-user       440 Dec  2 18:49 pilot3
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user 917789155 Dec  2 23:11 HITS.47523449._005273.pool.root.1
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user        95 Dec  2 23:11 pilot_heartbeat.json
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user      1033 Dec  2 23:12 memory_monitor_summary.json
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user   1516240 Dec  2 23:12 agis_ddmendpoints.agis.ALL.json
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user   1557169 Dec  2 23:12 log.47523449._005273.job.log.tgz.1
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user      8586 Dec  2 23:12 heartbeat.json
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user       819 Dec  2 23:12 pilotlog.txt
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user   2271551 Dec  2 23:12 log.47523449._005273.job.log.1
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user       353 Dec  2 23:12 output.list
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user       620 Dec  2 23:12 runtime_log
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user   3850240 Dec  2 23:12 result.tar.gz
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user       650 Dec  2 23:12 yWOLDmDtJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuwHKDmm6A7Wm.diag
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user      9221 Dec  2 23:12 runtime_log.err
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user     21773 Dec  2 23:12 stderr.txt
[2025-12-02 23:12:48] HITS file was successfully produced:
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user 917789155 Dec  2 23:11 shared/HITS.pool.root.1
[2025-12-02 23:12:48]  *** Contents of shared directory: ***
[2025-12-02 23:12:48] total 1300204
[2025-12-02 23:12:48] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:49 start_atlas.sh
[2025-12-02 23:12:48] -rw-r--r-- 2 mf493845 unix-user    590098 Dec  2 18:49 input.tar.gz
[2025-12-02 23:12:48] -rw-r--r-- 2 mf493845 unix-user 409156522 Dec  2 18:49 ATLAS.root_0
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user 917789155 Dec  2 23:11 HITS.pool.root.1
[2025-12-02 23:12:48] -rw------- 1 mf493845 unix-user   3850240 Dec  2 23:12 result.tar.gz
23:12:49 (29029): run_atlas exited; CPU time 119907.342676
23:12:49 (29029): called boinc_finish(0)

</stderr_txt>
]]>

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