Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:13:41 (4620): wrapper (7.7.26015): starting
09:13:41 (4620): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 09:13:41] Arguments: --nthreads 8
[2025-12-02 09:13:41] Threads: 8
[2025-12-02 09:13:41] Checking for CVMFS
[2025-12-02 09:13:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 09:13:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 09:13:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 09:13:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 09:13:41] 2.11.2.0 2856 153464 82168 153557 1 69 14643201 20275201 1 130560 0 56322303 99.943 6773165 34717 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 09:13:41] CVMFS is ok
[2025-12-02 09:13:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 09:13:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 09:13:41] Further information can be found at the LHC@home message board.
[2025-12-02 09:13:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 09:13:41] Checking for apptainer binary...
[2025-12-02 09:13:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 09:13:41] Running /usr/bin/apptainer --version
[2025-12-02 09:13:41] apptainer version 1.3.2-1.el7
[2025-12-02 09:13:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 09:13:43] c-115-6.aglt2.org
[2025-12-02 09:13:43] apptainer works
[2025-12-02 09:13:43] Set ATHENA_PROC_NUMBER=8
[2025-12-02 09:13:43] Set ATHENA_CORE_NUMBER=8
[2025-12-02 09:13:43] Starting ATLAS job with PandaID=6893852557
[2025-12-02 09:13:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 20:33:35]  *** The last 200 lines of the pilot log: ***
[2025-12-02 20:33:35] 2025-12-03 01:33:00,021 | INFO     | time since job start (40740s) is within the limit (172800.0s)
[2025-12-02 20:33:35] 2025-12-03 01:33:02,018 | INFO     | monitor loop #3002: job 0:6893852557 is in state 'finished'
[2025-12-02 20:33:35] 2025-12-03 01:33:02,019 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:33:35] 2025-12-03 01:33:02,027 | INFO     | time since job start (40742s) is within the limit (172800.0s)
[2025-12-02 20:33:35] 2025-12-03 01:33:03,669 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-02 20:33:35] 2025-12-03 01:33:03,672 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-12-02 20:33:35] 2025-12-03 01:33:03,673 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893852557/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 20:33:35] 2025-12-03 01:33:03,674 | INFO     | extracted standard info from prmon json
[2025-12-02 20:33:35] 2025-12-03 01:33:03,674 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 20:33:35] 2025-12-03 01:33:03,674 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 20:33:35] 2025-12-03 01:33:03,684 | INFO     | fitting pss+swap vs Time
[2025-12-02 20:33:35] 2025-12-03 01:33:03,685 | INFO     | sum of square deviations: 92429225911.63469
[2025-12-02 20:33:35] 2025-12-03 01:33:03,693 | INFO     | sum of deviations: 706618793454.3491
[2025-12-02 20:33:35] 2025-12-03 01:33:03,694 | INFO     | mean x: 1764705216.0808384
[2025-12-02 20:33:35] 2025-12-03 01:33:03,694 | INFO     | mean y: 3258061.1601796406
[2025-12-02 20:33:35] 2025-12-03 01:33:03,694 | INFO     | intersect: -13487862937.535467
[2025-12-02 20:33:35] 2025-12-03 01:33:03,694 | INFO     | chi2: 5.9041543184987
[2025-12-02 20:33:35] 2025-12-03 01:33:03,695 | INFO     | sum of square deviations: 90369342834.9352
[2025-12-02 20:33:35] 2025-12-03 01:33:03,704 | INFO     | sum of deviations: 951244077761.2747
[2025-12-02 20:33:35] 2025-12-03 01:33:03,704 | INFO     | mean x: 1764705063.5852187
[2025-12-02 20:33:35] 2025-12-03 01:33:03,704 | INFO     | mean y: 3276157.5791855203
[2025-12-02 20:33:35] 2025-12-03 01:33:03,704 | INFO     | intersect: -18572329109.319252
[2025-12-02 20:33:35] 2025-12-03 01:33:03,705 | INFO     | chi2: 2.876757020338542
[2025-12-02 20:33:35] 2025-12-03 01:33:03,705 | INFO     | current chi2=2.876757020338542 (change=51.27571426571317 %)
[2025-12-02 20:33:35] 2025-12-03 01:33:03,706 | INFO     | sum of square deviations: 88340297545.70969
[2025-12-02 20:33:35] 2025-12-03 01:33:03,714 | INFO     | sum of deviations: 974908829772.8026
[2025-12-02 20:33:35] 2025-12-03 01:33:03,714 | INFO     | mean x: 1764704911.0896657
[2025-12-02 20:33:35] 2025-12-03 01:33:03,714 | INFO     | mean y: 3277924.6474164133
[2025-12-02 20:33:35] 2025-12-03 01:33:03,714 | INFO     | intersect: -19471711944.778233
[2025-12-02 20:33:35] 2025-12-03 01:33:03,715 | INFO     | chi2: 2.744463381296979
[2025-12-02 20:33:35] 2025-12-03 01:33:03,715 | INFO     | current chi2=2.744463381296979 (change=4.598707437098544 %)
[2025-12-02 20:33:35] 2025-12-03 01:33:03,715 | INFO     | right removable region: 657
[2025-12-02 20:33:35] 2025-12-03 01:33:03,716 | INFO     | sum of square deviations: 90369106154.93513
[2025-12-02 20:33:35] 2025-12-03 01:33:03,724 | INFO     | sum of deviations: 484439846961.9608
[2025-12-02 20:33:35] 2025-12-03 01:33:03,724 | INFO     | mean x: 1764705368.5852187
[2025-12-02 20:33:35] 2025-12-03 01:33:03,724 | INFO     | mean y: 3274479.098039216
[2025-12-02 20:33:35] 2025-12-03 01:33:03,724 | INFO     | intersect: -9456746041.90484
[2025-12-02 20:33:35] 2025-12-03 01:33:03,725 | INFO     | chi2: 3.305632812656182
[2025-12-02 20:33:35] 2025-12-03 01:33:03,725 | INFO     | current chi2=3.305632812656182 (change=44.01174775701436 %)
[2025-12-02 20:33:35] 2025-12-03 01:33:03,726 | INFO     | sum of square deviations: 88339824185.70961
[2025-12-02 20:33:35] 2025-12-03 01:33:03,734 | INFO     | sum of deviations: 439020888008.37494
[2025-12-02 20:33:35] 2025-12-03 01:33:03,734 | INFO     | mean x: 1764705521.0896657
[2025-12-02 20:33:35] 2025-12-03 01:33:03,734 | INFO     | mean y: 3277890.790273556
[2025-12-02 20:33:35] 2025-12-03 01:33:03,734 | INFO     | intersect: -8766748448.784378
[2025-12-02 20:33:35] 2025-12-03 01:33:03,735 | INFO     | chi2: 3.2548544908249357
[2025-12-02 20:33:35] 2025-12-03 01:33:03,735 | INFO     | current chi2=3.2548544908249357 (change=1.5361150106216515 %)
[2025-12-02 20:33:35] 2025-12-03 01:33:03,735 | INFO     | left removable region: 20
[2025-12-02 20:33:35] 2025-12-03 01:33:03,736 | INFO     | sum of square deviations: 80149019624.91986
[2025-12-02 20:33:35] 2025-12-03 01:33:03,744 | INFO     | sum of deviations: 652751006885.7775
[2025-12-02 20:33:35] 2025-12-03 01:33:03,744 | INFO     | mean x: 1764705490.5996861
[2025-12-02 20:33:35] 2025-12-03 01:33:03,744 | INFO     | mean y: 3302361.885400314
[2025-12-02 20:33:35] 2025-12-03 01:33:03,744 | INFO     | intersect: -14368842066.536942
[2025-12-02 20:33:35] 2025-12-03 01:33:03,745 | INFO     | chi2: 0.04712524839087649
[2025-12-02 20:33:35] 2025-12-03 01:33:03,745 | INFO     | current memory leak: 8.14 B/s (using 637 data points, chi2=0.05)
[2025-12-02 20:33:35] 2025-12-03 01:33:03,745 | INFO     | could have reported an average CPU frequency of 2396 MHz (26 samples)
[2025-12-02 20:33:35] 2025-12-03 01:33:03,745 | INFO     | ..............................
[2025-12-02 20:33:35] 2025-12-03 01:33:03,746 | INFO     | . Timing measurements:
[2025-12-02 20:33:35] 2025-12-03 01:33:03,746 | INFO     | . get job = 0 s
[2025-12-02 20:33:35] 2025-12-03 01:33:03,746 | INFO     | . initial setup = 2 s
[2025-12-02 20:33:35] 2025-12-03 01:33:03,746 | INFO     | . payload setup = 9 s
[2025-12-02 20:33:35] 2025-12-03 01:33:03,746 | INFO     | . stage-in = 0 s
[2025-12-02 20:33:35] 2025-12-03 01:33:03,746 | INFO     | . payload execution = 40702 s
[2025-12-02 20:33:35] 2025-12-03 01:33:03,746 | INFO     | . stage-out = 3 s
[2025-12-02 20:33:35] 2025-12-03 01:33:03,746 | INFO     | . log creation = 0 s
[2025-12-02 20:33:35] 2025-12-03 01:33:03,747 | INFO     | ..............................
[2025-12-02 20:33:35] 2025-12-03 01:33:03,827 | INFO     | 
[2025-12-02 20:33:35] 2025-12-03 01:33:03,828 | INFO     | job summary report
[2025-12-02 20:33:35] 2025-12-03 01:33:03,828 | INFO     | --------------------------------------------------
[2025-12-02 20:33:35] 2025-12-03 01:33:03,828 | INFO     | PanDA job id: 6893852557
[2025-12-02 20:33:35] 2025-12-03 01:33:03,828 | INFO     | task id: 47523449
[2025-12-02 20:33:35] 2025-12-03 01:33:03,829 | INFO     | errors: (none)
[2025-12-02 20:33:35] 2025-12-03 01:33:03,829 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 20:33:35] 2025-12-03 01:33:03,829 | INFO     | pilot state: finished 
[2025-12-02 20:33:35] 2025-12-03 01:33:03,829 | INFO     | transexitcode: 0
[2025-12-02 20:33:35] 2025-12-03 01:33:03,829 | INFO     | exeerrorcode: 0
[2025-12-02 20:33:35] 2025-12-03 01:33:03,829 | INFO     | exeerrordiag: 
[2025-12-02 20:33:35] 2025-12-03 01:33:03,830 | INFO     | exitcode: 0
[2025-12-02 20:33:35] 2025-12-03 01:33:03,830 | INFO     | exitmsg: OK
[2025-12-02 20:33:35] 2025-12-03 01:33:03,830 | INFO     | cpuconsumptiontime: 317139 s
[2025-12-02 20:33:35] 2025-12-03 01:33:03,830 | INFO     | nevents: 1000
[2025-12-02 20:33:35] 2025-12-03 01:33:03,830 | INFO     | neventsw: 0
[2025-12-02 20:33:35] 2025-12-03 01:33:03,830 | INFO     | pid: 14805
[2025-12-02 20:33:35] 2025-12-03 01:33:03,830 | INFO     | pgrp: 14805
[2025-12-02 20:33:35] 2025-12-03 01:33:03,831 | INFO     | corecount: 8
[2025-12-02 20:33:35] 2025-12-03 01:33:03,831 | INFO     | event service: False
[2025-12-02 20:33:35] 2025-12-03 01:33:03,831 | INFO     | sizes: {0: 2284143, 1: 2284342, 6: 2284604, 11: 2284632, 40715: 2328533, 40720: 2337711, 40726: 2337901}
[2025-12-02 20:33:35] 2025-12-03 01:33:03,831 | INFO     | --------------------------------------------------
[2025-12-02 20:33:35] 2025-12-03 01:33:03,831 | INFO     | 
[2025-12-02 20:33:35] 2025-12-03 01:33:03,831 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-02 20:33:35] 2025-12-03 01:33:03,859 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,859 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,860 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,860 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,860 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,860 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,860 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,861 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,861 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,861 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,861 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,861 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,861 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,862 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,862 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,862 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 20:33:35] 2025-12-03 01:33:03,862 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,862 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 20:33:35] 2025-12-03 01:33:03,863 | INFO     | job 6893852557 has completed (purged errors)
[2025-12-02 20:33:35] 2025-12-03 01:33:03,863 | INFO     | overall cleanup function is called
[2025-12-02 20:33:35] 2025-12-03 01:33:04,878 | INFO     | --- collectZombieJob: --- 10, [14805]
[2025-12-02 20:33:35] 2025-12-03 01:33:04,878 | INFO     | zombie collector waiting for pid 14805
[2025-12-02 20:33:35] 2025-12-03 01:33:04,885 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 20:33:35] 2025-12-03 01:33:04,885 | INFO     | collected zombie processes
[2025-12-02 20:33:35] 2025-12-03 01:33:04,885 | INFO     | will attempt to kill all subprocesses of pid=14805
[2025-12-02 20:33:35] 2025-12-03 01:33:04,967 | INFO     | process IDs to be killed: [14805] (in reverse order)
[2025-12-02 20:33:35] 2025-12-03 01:33:05,021 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 20:33:35] 2025-12-03 01:33:05,022 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 20:33:35] 2025-12-03 01:33:05,026 | INFO     | did not find any defunct processes belonging to 14805
[2025-12-02 20:33:35] 2025-12-03 01:33:05,031 | INFO     | did not find any defunct processes belonging to 14805
[2025-12-02 20:33:35] 2025-12-03 01:33:05,033 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 20:33:35] 2025-12-03 01:33:05,033 | INFO     | ready for new job
[2025-12-02 20:33:35] 2025-12-03 01:33:05,033 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 20:33:35] 2025-12-03 01:33:05,036 | INFO     | ***************************************
[2025-12-02 20:33:35] 2025-12-03 01:33:05,036 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 20:33:35] 2025-12-03 01:33:05,036 | INFO     | ***************************************
[2025-12-02 20:33:35] 2025-12-03 01:33:05,037 | INFO     | 
[2025-12-02 20:33:35] 2025-12-03 01:33:05,037 | INFO     | architecture information:
[2025-12-02 20:33:35] 2025-12-03 01:33:05,038 | INFO     | executing command: cat /etc/os-release
[2025-12-02 20:33:35] 2025-12-03 01:33:05,056 | INFO     | cat /etc/os-release:
[2025-12-02 20:33:35] NAME="CentOS Linux"
[2025-12-02 20:33:35] VERSION="7 (Core)"
[2025-12-02 20:33:35] ID="centos"
[2025-12-02 20:33:35] ID_LIKE="rhel fedora"
[2025-12-02 20:33:35] VERSION_ID="7"
[2025-12-02 20:33:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 20:33:35] ANSI_COLOR="0;31"
[2025-12-02 20:33:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 20:33:35] HOME_URL="https://www.centos.org/"
[2025-12-02 20:33:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 20:33:35] 
[2025-12-02 20:33:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 20:33:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 20:33:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 20:33:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 20:33:35] 
[2025-12-02 20:33:35] 2025-12-03 01:33:05,056 | INFO     | ***************************************
[2025-12-02 20:33:35] 2025-12-03 01:33:05,559 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-02 20:33:35] 2025-12-03 01:33:05,579 | INFO     | sufficient remaining disk space (17451450368 B)
[2025-12-02 20:33:35] 2025-12-03 01:33:05,579 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 20:33:35] 2025-12-03 01:33:05,580 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 20:33:35] 2025-12-03 01:33:05,580 | INFO     | update_server=False
[2025-12-02 20:33:35] 2025-12-03 01:33:05,580 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 20:33:35] 2025-12-03 01:33:05,580 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:33:35] 2025-12-03 01:33:05,581 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:33:35] 2025-12-03 01:33:05,581 | INFO     | aborting loop
[2025-12-02 20:33:35] 2025-12-03 01:33:05,938 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 20:33:35] 2025-12-03 01:33:06,512 | INFO     | all data control threads have been joined
[2025-12-02 20:33:35] 2025-12-03 01:33:06,586 | INFO     | [job] retrieve thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:06,586 | INFO     | [job] queue monitor thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:06,587 | INFO     | [job] job monitor thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:06,606 | INFO     | all payload control threads have been joined
[2025-12-02 20:33:35] 2025-12-03 01:33:06,761 | INFO     | all job control threads have been joined
[2025-12-02 20:33:35] 2025-12-03 01:33:06,807 | INFO     | [payload] validate_post thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:06,910 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:07,191 | INFO     | [payload] failed_post thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:07,233 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:07,345 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:07,459 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:07,498 | INFO     | [job] validate thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:07,507 | INFO     | [data] copytool_in thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:07,518 | INFO     | [data] control thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:07,611 | INFO     | [payload] control thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:07,758 | INFO     | [monitor] cgroup control has ended
[2025-12-02 20:33:35] 2025-12-03 01:33:07,766 | INFO     | [job] control thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:07,943 | INFO     | [data] copytool_out thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:08,517 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 20:33:35] 2025-12-03 01:33:12,521 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 20:33:35] 2025-12-03 01:33:14,028 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139885560616768)>', '<ExcThread(monitor, started 139884459190016)>']
[2025-12-02 20:33:35] 2025-12-03 01:33:19,028 | INFO     | all workflow threads have been joined
[2025-12-02 20:33:35] 2025-12-03 01:33:19,029 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 20:33:35] 2025-12-03 01:33:19,029 | INFO     | traces error code: 0
[2025-12-02 20:33:35] 2025-12-03 01:33:19,029 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 20:33:35] 2025-12-03 01:33:35,203 | INFO     | PID=8357 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 20:33:35] 2025-12-03 01:33:35,204 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 20:33:35] 2025-12-03 01:33:35,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 20:33:35] 2025-12-03 01:33:35,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 20:33:35] 2025-12-03 01:33:35,204 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 20:33:35] 2025-12-03 01:33:35,204 | INFO     | [monitor] control thread has ended
[2025-12-02 20:33:35] 2025-12-03 01:33:35,303 [wrapper] ==== pilot stdout END ====
[2025-12-02 20:33:35] 2025-12-03 01:33:35,308 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 20:33:35] 2025-12-03 01:33:35,313 [wrapper] pilotpid: 8357
[2025-12-02 20:33:35] 2025-12-03 01:33:35,317 [wrapper] Pilot exit status: 0
[2025-12-02 20:33:35] 2025-12-03 01:33:35,334 [wrapper] pandaids: 6893852557
[2025-12-02 20:33:35] 2025-12-03 01:33:35,379 [wrapper] cleanup supervisor_pilot  6234 8358
[2025-12-02 20:33:35] 2025-12-03 01:33:35,384 [wrapper] Test setup, not cleaning
[2025-12-02 20:33:35] 2025-12-03 01:33:35,388 [wrapper] apfmon messages muted
[2025-12-02 20:33:35] 2025-12-03 01:33:35,393 [wrapper] ==== wrapper stdout END ====
[2025-12-02 20:33:35] 2025-12-03 01:33:35,398 [wrapper] ==== wrapper stderr END ====
[2025-12-02 20:33:35]  *** Error codes and diagnostics ***
[2025-12-02 20:33:35]     "exeErrorCode": 0,
[2025-12-02 20:33:35]     "exeErrorDiag": "",
[2025-12-02 20:33:35]     "pilotErrorCode": 0,
[2025-12-02 20:33:35]     "pilotErrorDiag": "",
[2025-12-02 20:33:35]  *** Listing of results directory ***
[2025-12-02 20:33:35] total 1331172
[2025-12-02 20:33:35] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 06:54 pilot3.tar.gz
[2025-12-02 20:33:35] -rwx------ 1 boincer umatlas     36292 Nov 20 07:05 runpilot2-wrapper.sh
[2025-12-02 20:33:35] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 07:06 queuedata.json
[2025-12-02 20:33:35] -rw-r--r-- 1 boincer umatlas       100 Dec  2 09:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 20:33:35] -rwxr-xr-x 1 boincer umatlas      7986 Dec  2 09:13 run_atlas
[2025-12-02 20:33:35] -rw-r--r-- 1 boincer umatlas       105 Dec  2 09:13 job.xml
[2025-12-02 20:33:35] -rw-r--r-- 2 boincer umatlas 410306396 Dec  2 09:13 EVNT.47493127._000392.pool.root.1
[2025-12-02 20:33:35] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 09:13 start_atlas.sh
[2025-12-02 20:33:35] drwxrwx--x 2 boincer umatlas      4096 Dec  2 09:13 shared
[2025-12-02 20:33:35] -rw-r--r-- 2 boincer umatlas    590100 Dec  2 09:13 input.tar.gz
[2025-12-02 20:33:35] -rw-r--r-- 1 boincer umatlas         0 Dec  2 09:13 boinc_lockfile
[2025-12-02 20:33:35] -rw-r--r-- 1 boincer umatlas      2785 Dec  2 09:13 pandaJob.out
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas        57 Dec  2 09:13 setup.sh.local
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas    987484 Dec  2 09:13 agis_schedconf.cvmfs.json
[2025-12-02 20:33:35] drwx------ 5 boincer umatlas      4096 Dec  2 09:14 pilot3
[2025-12-02 20:33:35] -rw-r--r-- 1 boincer umatlas       532 Dec  2 20:25 boinc_task_state.xml
[2025-12-02 20:33:35] -rw-r--r-- 1 boincer umatlas      5911 Dec  2 20:30 init_data.xml
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas 933822899 Dec  2 20:32 HITS.47523449._003916.pool.root.1
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas        95 Dec  2 20:32 pilot_heartbeat.json
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas      1060 Dec  2 20:32 memory_monitor_summary.json
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas   1516240 Dec  2 20:32 agis_ddmendpoints.agis.ALL.json
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas   1923486 Dec  2 20:32 log.47523449._003916.job.log.tgz.1
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas      8660 Dec  2 20:33 heartbeat.json
[2025-12-02 20:33:35] -rw-r--r-- 1 boincer umatlas      8192 Dec  2 20:33 boinc_mmap_file
[2025-12-02 20:33:35] -rw-r--r-- 1 boincer umatlas        29 Dec  2 20:33 wrapper_checkpoint.txt
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas       744 Dec  2 20:33 pilotlog.txt
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas   5618123 Dec  2 20:33 log.47523449._003916.job.log.1
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas       353 Dec  2 20:33 output.list
[2025-12-02 20:33:35] -rw-r--r-- 1 boincer umatlas       620 Dec  2 20:33 runtime_log
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas   7557120 Dec  2 20:33 result.tar.gz
[2025-12-02 20:33:35] -rw-r--r-- 1 boincer umatlas      9338 Dec  2 20:33 runtime_log.err
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas       667 Dec  2 20:33 OVRMDmPbIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKiHKDmMjqhLn.diag
[2025-12-02 20:33:35] -rw-r--r-- 1 boincer umatlas     21285 Dec  2 20:33 stderr.txt
[2025-12-02 20:33:35] HITS file was successfully produced:
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas 933822899 Dec  2 20:32 shared/HITS.pool.root.1
[2025-12-02 20:33:35]  *** Contents of shared directory: ***
[2025-12-02 20:33:35] total 1320612
[2025-12-02 20:33:35] -rw-r--r-- 2 boincer umatlas 410306396 Dec  2 09:13 ATLAS.root_0
[2025-12-02 20:33:35] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 09:13 start_atlas.sh
[2025-12-02 20:33:35] -rw-r--r-- 2 boincer umatlas    590100 Dec  2 09:13 input.tar.gz
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas 933822899 Dec  2 20:32 HITS.pool.root.1
[2025-12-02 20:33:35] -rw------- 1 boincer umatlas   7557120 Dec  2 20:33 result.tar.gz
20:33:37 (4620): run_atlas exited; CPU time 315234.678712
20:33:37 (4620): called boinc_finish(0)

</stderr_txt>
]]>

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