Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-03 09:20:20 (5820): vboxwrapper version 26210
2025-12-03 09:20:20 (5820): BOINC client version: 8.2.8
2025-12-03 09:20:21 (5820): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-12-03 09:20:21 (5820): Successfully copied 'init_data.xml' to the shared directory.
2025-12-03 09:20:21 (5820): Create VM. (boinc_47041120253ebe1e, slot#1)
2025-12-03 09:20:22 (5820): Setting Memory Size for VM. (4800MB)
2025-12-03 09:20:22 (5820): Setting CPU Count for VM. (8)
2025-12-03 09:20:22 (5820): Setting Chipset Options for VM.
2025-12-03 09:20:23 (5820): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-03 09:20:23 (5820): Setting Boot Options for VM.
2025-12-03 09:20:23 (5820): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-03 09:20:24 (5820): Enabling VM Network Access.
2025-12-03 09:20:24 (5820): Disabling USB Support for VM.
2025-12-03 09:20:24 (5820): Disabling COM Port Support for VM.
2025-12-03 09:20:24 (5820): Disabling LPT Port Support for VM.
2025-12-03 09:20:25 (5820): Disabling Audio Support for VM.
2025-12-03 09:20:25 (5820): Disabling Clipboard Support for VM.
2025-12-03 09:20:25 (5820): Disabling Drag and Drop Support for VM.
2025-12-03 09:20:26 (5820): Adding storage controller(s) to VM.
2025-12-03 09:20:26 (5820): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-03 09:20:31 (5820): Adding VirtualBox Guest Additions to VM.
2025-12-03 09:20:31 (5820): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-03 09:20:32 (5820): forwarding host port 52600 to guest port 80
2025-12-03 09:20:32 (5820): Enabling remote desktop for VM.
2025-12-03 09:20:32 (5820): Required extension pack not installed, remote desktop not enabled.
2025-12-03 09:20:32 (5820): Enabling shared directory for VM.
2025-12-03 09:20:33 (5820): Starting VM using VBoxManage interface. (boinc_47041120253ebe1e, slot#1)
2025-12-03 09:20:40 (5820): Successfully started VM. (PID = '5656')
2025-12-03 09:20:40 (5820): Reporting VM Process ID to BOINC.
2025-12-03 09:20:40 (5820): Guest Log: BIOS: VirtualBox 7.1.10
2025-12-03 09:20:40 (5820): Guest Log: CPUID EDX: 0x178bfbff
2025-12-03 09:20:40 (5820): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-03 09:20:40 (5820): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-03 09:20:40 (5820): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-03 09:20:40 (5820): Detected: Web Application Enabled (http://localhost:52600)
2025-12-03 09:20:40 (5820): Preference change detected
2025-12-03 09:20:40 (5820): Setting CPU throttle for VM. (100%)
2025-12-03 09:20:40 (5820): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-03 09:20:42 (5820): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-03 09:20:42 (5820): Guest Log: BIOS: Booting from Hard Disk...
2025-12-03 09:20:46 (5820): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-03 09:20:46 (5820): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-03 09:20:46 (5820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-03 09:20:57 (5820): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-03 09:20:57 (5820): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-03 09:21:11 (5820): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-03 09:21:11 (5820): Guest Log: 00:00:00.000173 main     Log opened 2025-12-03T09:21:09.229331000Z
2025-12-03 09:21:11 (5820): Guest Log: 00:00:00.000311 main     OS Product: Linux
2025-12-03 09:21:11 (5820): Guest Log: 00:00:00.000353 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-03 09:21:11 (5820): Guest Log: 00:00:00.000390 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-03 09:21:11 (5820): Guest Log: 00:00:00.000427 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-03 09:21:11 (5820): Guest Log: 00:00:00.000428 main     Process ID: 1399
2025-12-03 09:21:11 (5820): Guest Log: 00:00:00.000429 main     Package type: LINUX_64BITS_GENERIC
2025-12-03 09:21:11 (5820): Guest Log: 00:00:00.001714 main     5.2.32 r132073 started. Verbose level = 0
2025-12-03 09:21:11 (5820): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-03 09:21:11 (5820): Guest Log: [INFO] Mounting shared directory
2025-12-03 09:21:11 (5820): Guest Log: [INFO] Checking for init_data.xml
2025-12-03 09:21:15 (5820): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-03 09:21:15 (5820): Guest Log: [INFO] Detected branch: prod
2025-12-03 09:21:15 (5820): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-03 09:21:15 (5820): Guest Log: Copying input files
2025-12-03 09:21:17 (5820): Guest Log: Copied input files into RunAtlas.
2025-12-03 09:21:17 (5820): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-03 09:21:17 (5820): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-03 09:21:17 (5820): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-03 09:21:17 (5820): Guest Log: Further information can be found at the LHC@home message board.
2025-12-03 09:21:21 (5820): Guest Log: 00:00:10.004291 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 493 443 000ns (GuestNow=1 764 750 080 738 987 000 ns GuestLast=1 764 753 669 232 430 000 ns fSetTimeLastLoop=true )
2025-12-03 09:21:43 (5820): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-03 09:21:45 (5820): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-03 09:21:45 (5820): Guest Log: 2.6.3.0 1676 0 30172 153586 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-12-03 09:21:49 (5820): Guest Log: copied the webapp to /var/www
2025-12-03 09:21:49 (5820): Guest Log: ATHENA_PROC_NUMBER=8
2025-12-03 09:21:49 (5820): Guest Log: ATHENA_CORE_NUMBER=8
2025-12-03 09:21:52 (5820): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-03 09:21:52 (5820): Guest Log:  *** Starting ATLAS job. (PandaID=6895338347 taskID=47556137) ***
2025-12-03 11:00:45 (5820): Status Report: Elapsed Time: '6000.000000'
2025-12-03 11:00:45 (5820): Status Report: CPU Time: '30982.718750'
2025-12-03 12:40:51 (5820): Status Report: Elapsed Time: '12000.000000'
2025-12-03 12:40:51 (5820): Status Report: CPU Time: '78826.046875'
2025-12-03 14:20:56 (5820): Status Report: Elapsed Time: '18000.000000'
2025-12-03 14:20:56 (5820): Status Report: CPU Time: '126718.046875'
2025-12-03 16:01:01 (5820): Status Report: Elapsed Time: '24000.000000'
2025-12-03 16:01:01 (5820): Status Report: CPU Time: '174649.171875'
2025-12-03 17:41:06 (5820): Status Report: Elapsed Time: '30000.000000'
2025-12-03 17:41:06 (5820): Status Report: CPU Time: '222565.375000'
2025-12-03 19:21:12 (5820): Status Report: Elapsed Time: '36000.000000'
2025-12-03 19:21:12 (5820): Status Report: CPU Time: '270494.765625'
2025-12-03 21:01:17 (5820): Status Report: Elapsed Time: '42000.000000'
2025-12-03 21:01:17 (5820): Status Report: CPU Time: '318417.843750'
2025-12-03 21:40:00 (5820): Guest Log:  *** Job finished ***
2025-12-03 21:40:00 (5820): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:30,737 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:30,737 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:53,586 | INFO     | [monitor] cgroup control has ended
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:54,588 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140328211912512)>', '<ExcThread(monitor, started 140327620949760)>']
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:55,165 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:55,166 | INFO     | [monitor] control thread has ended
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,589 | INFO     | all workflow threads have been joined
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,589 | INFO     | end of generic workflow (traces error code: 0)
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,589 | INFO     | traces error code: 0
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,589 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,719 [wrapper] ==== pilot stdout END ====
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,725 [wrapper] ==== wrapper stdout RESUME ====
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,730 [wrapper] pilotpid: 6143
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,735 [wrapper] Pilot exit status: 0
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,756 [wrapper] pandaids: 6895338347
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,794 [wrapper] cleanup supervisor_pilot 29378 6144
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,801 [wrapper] Test setup, not cleaning
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,807 [wrapper] apfmon messages muted
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,812 [wrapper] ==== wrapper stdout END ====
2025-12-03 21:40:00 (5820): Guest Log: 2025-12-03 20:39:59,817 [wrapper] ==== wrapper stderr END ====
2025-12-03 21:40:00 (5820): Guest Log:  *** Error codes and diagnostics ***
2025-12-03 21:40:00 (5820): Guest Log:     "exeErrorCode": 0,
2025-12-03 21:40:00 (5820): Guest Log:     "exeErrorDiag": "",
2025-12-03 21:40:00 (5820): Guest Log:     "pilotErrorCode": 0,
2025-12-03 21:40:00 (5820): Guest Log:     "pilotErrorDiag": "",
2025-12-03 21:40:00 (5820): Guest Log:  *** Listing of results directory ***
2025-12-03 21:40:00 (5820): Guest Log: total 910224
2025-12-03 21:40:00 (5820): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 08:40 queuedata.json
2025-12-03 21:40:00 (5820): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 08:40 pilot3.tar.gz
2025-12-03 21:40:00 (5820): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 08:42 runpilot2-wrapper.sh
2025-12-03 21:40:00 (5820): Guest Log: -rwxr-xr-x. 1 atlas atlas      8758 Dec  3 08:21 init_data.xml
2025-12-03 21:40:00 (5820): Guest Log: -rwxr-xr-x. 1 atlas atlas    590105 Dec  3 08:21 input.tar.gz
2025-12-03 21:40:00 (5820): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Dec  3 08:21 start_atlas.sh
2025-12-03 21:40:00 (5820): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec  3 08:21 EVNT.47483658._000319.pool.root.1 -> /data/./ATLAS.root_0
2025-12-03 21:40:00 (5820): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Dec  3 08:21 pandaJob.out
2025-12-03 21:40:00 (5820): Guest Log: -rw-------. 1 atlas atlas    985766 Dec  3 08:27 agis_schedconf.cvmfs.json
2025-12-03 21:40:00 (5820): Guest Log: drwx------. 5 atlas atlas      4096 Dec  3 08:28 pilot3
2025-12-03 21:40:00 (5820): Guest Log: -rw-------. 1 atlas atlas 912887100 Dec  3 20:38 HITS.47556137._003152.pool.root.1
2025-12-03 21:40:00 (5820): Guest Log: -rw-------. 1 atlas atlas      1058 Dec  3 20:38 memory_monitor_summary.json
2025-12-03 21:40:00 (5820): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec  3 20:38 agis_ddmendpoints.agis.ALL.json
2025-12-03 21:40:00 (5820): Guest Log: -rw-------. 1 atlas atlas   1960426 Dec  3 20:38 log.47556137._003152.job.log.tgz.1
2025-12-03 21:40:00 (5820): Guest Log: -rw-------. 1 atlas atlas        96 Dec  3 20:38 pilot_heartbeat.json
2025-12-03 21:40:00 (5820): Guest Log: -rw-------. 1 atlas atlas      8668 Dec  3 20:38 heartbeat.json
2025-12-03 21:40:00 (5820): Guest Log: -rw-------. 1 atlas atlas      4805 Dec  3 20:39 pilotlog.txt
2025-12-03 21:40:00 (5820): Guest Log: -rw-------. 1 atlas atlas   5708220 Dec  3 20:39 log.47556137._003152.job.log.1
2025-12-03 21:40:00 (5820): Guest Log: -rw-------. 1 atlas atlas       353 Dec  3 20:39 output.list
2025-12-03 21:40:00 (5820): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec  3 20:39 runtime_log
2025-12-03 21:40:00 (5820): Guest Log: -rw-------. 1 atlas atlas   7690240 Dec  3 20:39 result.tar.gz
2025-12-03 21:40:00 (5820): Guest Log: -rw-r--r--. 1 atlas atlas      8777 Dec  3 20:39 runtime_log.err
2025-12-03 21:40:00 (5820): Guest Log: -rw-------. 1 atlas atlas       658 Dec  3 20:39 NYZMDmINyg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmD2HKDmqFGBTo.diag
2025-12-03 21:40:00 (5820): Guest Log: Looking for outputfile HITS.47556137._003152.pool.root.1
2025-12-03 21:40:00 (5820): Guest Log: HITS file was successfully produced
2025-12-03 21:40:00 (5820): Guest Log: -rw-------. 1 atlas atlas 912887100 Dec  3 20:38 /home/atlas/RunAtlas/HITS.47556137._003152.pool.root.1
2025-12-03 21:40:04 (5820): Guest Log: Successfully finished the ATLAS job!
2025-12-03 21:40:04 (5820): Guest Log: Copying the results back to the shared directory!
2025-12-03 21:40:05 (5820): Guest Log:  *** Contents of shared directory: ***
2025-12-03 21:40:05 (5820): Guest Log: total 1299028
2025-12-03 21:40:05 (5820): Guest Log: -rwxrwxrwx. 1 root root 408998784 Dec  3 08:20 ATLAS.root_0
2025-12-03 21:40:05 (5820): Guest Log: -rwxrwxrwx. 1 root root 912887100 Dec  3 20:40 HITS.pool.root.1
2025-12-03 21:40:05 (5820): Guest Log: -rwxrwxrwx. 1 root root      8758 Dec  3 08:20 init_data.xml
2025-12-03 21:40:05 (5820): Guest Log: -rwxrwxrwx. 1 root root    590105 Dec  2 14:21 input.tar.gz
2025-12-03 21:40:05 (5820): Guest Log: -rwxrwxrwx. 1 root root   7690240 Dec  3 20:40 result.tar.gz
2025-12-03 21:40:05 (5820): Guest Log: -rwxrwxrwx. 1 root root     15847 Dec  2 14:21 start_atlas.sh
2025-12-03 21:40:05 (5820): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-03 21:40:05 (5820): VM Completion File Detected.
2025-12-03 21:40:05 (5820): Powering off VM.
2025-12-03 21:40:05 (5820): Successfully stopped VM.
2025-12-03 21:40:05 (5820): Deregistering VM. (boinc_47041120253ebe1e, slot#1)
2025-12-03 21:40:05 (5820): Removing network bandwidth throttle group from VM.
2025-12-03 21:40:06 (5820): Removing VM from VirtualBox.
2025-12-03 21:40:11 (5820): called boinc_finish(0)

</stderr_txt>
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