Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:04:32 (12879): wrapper (7.7.26015): starting
18:04:32 (12879): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 18:04:32] Arguments: --nthreads 8
[2025-12-02 18:04:32] Threads: 8
[2025-12-02 18:04:32] Checking for CVMFS
[2025-12-02 18:04:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:04:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:04:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:04:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:04:32] 2.11.0.0 3956 74231 98744 153562 3 75 3822411 4096001 1782 130560 1 6147347 99.561 4879860 514 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 18:04:32] CVMFS is ok
[2025-12-02 18:04:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 18:04:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 18:04:32] Further information can be found at the LHC@home message board.
[2025-12-02 18:04:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:04:32] Checking for apptainer binary...
[2025-12-02 18:04:32] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 18:04:32] apptainer is not installed, using version from CVMFS
[2025-12-02 18:04:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:04:32] WARNING: Environment variable TMPDIR already has value [/tmp/job_10944695/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node067
[2025-12-02 18:04:32] apptainer works
[2025-12-02 18:04:32] Set ATHENA_PROC_NUMBER=8
[2025-12-02 18:04:32] Set ATHENA_CORE_NUMBER=8
[2025-12-02 18:04:32] Starting ATLAS job with PandaID=6897309780
[2025-12-02 18:04:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10944695/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 22:02:13]  *** The last 200 lines of the pilot log: ***
[2025-12-02 22:02:13] 2025-12-02 21:01:39,021 | INFO     | number of running child processes to parent process 24047: 1
[2025-12-02 22:02:13] 2025-12-02 21:01:39,021 | INFO     | maximum number of monitored processes: 16
[2025-12-02 22:02:13] 2025-12-02 21:01:39,691 | INFO     | time since job start (14222s) is within the limit (172800.0s)
[2025-12-02 22:02:13] 2025-12-02 21:01:40,420 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 22:02:13] 2025-12-02 21:01:40,424 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2934.4072187500005
[2025-12-02 22:02:13] 2025-12-02 21:01:40,430 | INFO     | using path: /tmp/job_10944695/atlas/pilot/slots/0/PanDA_Pilot-6897309780/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 22:02:13] 2025-12-02 21:01:40,430 | INFO     | extracted standard info from prmon json
[2025-12-02 22:02:13] 2025-12-02 21:01:40,430 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 22:02:13] 2025-12-02 21:01:40,430 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 22:02:13] 2025-12-02 21:01:40,432 | INFO     | fitting pss+swap vs Time
[2025-12-02 22:02:13] 2025-12-02 21:01:40,432 | INFO     | sum of square deviations: 3922276332.0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,433 | INFO     | sum of deviations: 379849663748.0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,433 | INFO     | mean x: 1764702173.0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,433 | INFO     | mean y: 3584150.6738197426
[2025-12-02 22:02:13] 2025-12-02 21:01:40,433 | INFO     | intersect: -170897563624.30017
[2025-12-02 22:02:13] 2025-12-02 21:01:40,433 | INFO     | chi2: 3.8547795069135193
[2025-12-02 22:02:13] 2025-12-02 21:01:40,434 | INFO     | sum of square deviations: 3675146117.0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,434 | INFO     | sum of deviations: 407808385173.5
[2025-12-02 22:02:13] 2025-12-02 21:01:40,434 | INFO     | mean x: 1764702020.5
[2025-12-02 22:02:13] 2025-12-02 21:01:40,435 | INFO     | mean y: 3600947.9342105263
[2025-12-02 22:02:13] 2025-12-02 21:01:40,435 | INFO     | intersect: -195814540258.37302
[2025-12-02 22:02:13] 2025-12-02 21:01:40,435 | INFO     | chi2: 2.3205445213562967
[2025-12-02 22:02:13] 2025-12-02 21:01:40,435 | INFO     | current chi2=2.3205445213562967 (change=39.80084938206149 %)
[2025-12-02 22:02:13] 2025-12-02 21:01:40,435 | INFO     | sum of square deviations: 3438620752.0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,436 | INFO     | sum of deviations: 365797106924.0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,436 | INFO     | mean x: 1764701868.0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,436 | INFO     | mean y: 3573858.7488789237
[2025-12-02 22:02:13] 2025-12-02 21:01:40,436 | INFO     | intersect: -187723682054.05396
[2025-12-02 22:02:13] 2025-12-02 21:01:40,436 | INFO     | chi2: 2.23407291860152
[2025-12-02 22:02:13] 2025-12-02 21:01:40,436 | INFO     | current chi2=2.23407291860152 (change=3.726349654530065 %)
[2025-12-02 22:02:13] 2025-12-02 21:01:40,436 | INFO     | right removable region: 222
[2025-12-02 22:02:13] 2025-12-02 21:01:40,436 | INFO     | sum of square deviations: 3675146117.0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,437 | INFO     | sum of deviations: 311408682570.0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,437 | INFO     | mean x: 1764702325.5
[2025-12-02 22:02:13] 2025-12-02 21:01:40,437 | INFO     | mean y: 3626100.5877192984
[2025-12-02 22:02:13] 2025-12-02 21:01:40,437 | INFO     | intersect: -149526109266.98444
[2025-12-02 22:02:13] 2025-12-02 21:01:40,437 | INFO     | chi2: 2.168699315703234
[2025-12-02 22:02:13] 2025-12-02 21:01:40,437 | INFO     | current chi2=2.168699315703234 (change=43.73999052828606 %)
[2025-12-02 22:02:13] 2025-12-02 21:01:40,437 | INFO     | sum of square deviations: 3438620752.0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,438 | INFO     | sum of deviations: 292639883783.9999
[2025-12-02 22:02:13] 2025-12-02 21:01:40,438 | INFO     | mean x: 1764702478.0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,438 | INFO     | mean y: 3638197.9192825113
[2025-12-02 22:02:13] 2025-12-02 21:01:40,438 | INFO     | intersect: -150179346585.99173
[2025-12-02 22:02:13] 2025-12-02 21:01:40,439 | INFO     | chi2: 2.1669032951825415
[2025-12-02 22:02:13] 2025-12-02 21:01:40,439 | INFO     | current chi2=2.1669032951825415 (change=0.08281556173728953 %)
[2025-12-02 22:02:13] 2025-12-02 21:01:40,439 | INFO     | left removable region: 20
[2025-12-02 22:02:13] 2025-12-02 21:01:40,439 | INFO     | sum of square deviations: 2555770710.5
[2025-12-02 22:02:13] 2025-12-02 21:01:40,439 | INFO     | sum of deviations: 245842796488.50006
[2025-12-02 22:02:13] 2025-12-02 21:01:40,439 | INFO     | mean x: 1764702447.5
[2025-12-02 22:02:13] 2025-12-02 21:01:40,439 | INFO     | mean y: 3647310.5594059406
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | intersect: -169745298821.86807
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | chi2: 0.4683032428153472
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | current memory leak: 96.19 B/s (using 202 data points, chi2=0.47)
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | could have reported an average CPU frequency of 2922 MHz (11 samples)
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | ..............................
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | . Timing measurements:
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | . get job = 0 s
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | . initial setup = 1 s
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | . payload setup = 4 s
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | . stage-in = 0 s
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | . payload execution = 14198 s
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | . stage-out = 1 s
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | . log creation = 0 s
[2025-12-02 22:02:13] 2025-12-02 21:01:40,440 | INFO     | ..............................
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | 
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | job summary report
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | --------------------------------------------------
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | PanDA job id: 6897309780
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | task id: 47531058
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | errors: (none)
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | pilot state: finished 
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | transexitcode: 0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | exeerrorcode: 0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | exeerrordiag: 
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | exitcode: 0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | exitmsg: OK
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | cpuconsumptiontime: 107198 s
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | nevents: 1000
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | neventsw: 0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | pid: 24047
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | pgrp: 24047
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | corecount: 8
[2025-12-02 22:02:13] 2025-12-02 21:01:40,698 | INFO     | event service: False
[2025-12-02 22:02:13] 2025-12-02 21:01:40,699 | INFO     | sizes: {0: 2284237, 1: 2284603, 3: 2284865, 11: 2284893, 14206: 2335765, 14207: 2344789, 14208: 2344973, 14210: 2345219}
[2025-12-02 22:02:13] 2025-12-02 21:01:40,699 | INFO     | --------------------------------------------------
[2025-12-02 22:02:13] 2025-12-02 21:01:40,699 | INFO     | 
[2025-12-02 22:02:13] 2025-12-02 21:01:40,699 | INFO     | executing command: ls -lF /tmp/job_10944695/atlas/pilot/slots/0
[2025-12-02 22:02:13] 2025-12-02 21:01:40,708 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,708 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,708 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,708 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,708 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,708 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | job 6897309780 has completed (purged errors)
[2025-12-02 22:02:13] 2025-12-02 21:01:40,709 | INFO     | overall cleanup function is called
[2025-12-02 22:02:13] 2025-12-02 21:01:41,717 | INFO     | --- collectZombieJob: --- 10, [24047]
[2025-12-02 22:02:13] 2025-12-02 21:01:41,717 | INFO     | zombie collector waiting for pid 24047
[2025-12-02 22:02:13] 2025-12-02 21:01:41,717 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 22:02:13] 2025-12-02 21:01:41,717 | INFO     | collected zombie processes
[2025-12-02 22:02:13] 2025-12-02 21:01:41,717 | INFO     | will attempt to kill all subprocesses of pid=24047
[2025-12-02 22:02:13] 2025-12-02 21:01:41,836 | INFO     | process IDs to be killed: [24047] (in reverse order)
[2025-12-02 22:02:13] 2025-12-02 21:01:41,881 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 22:02:13] 2025-12-02 21:01:41,881 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 22:02:13] 2025-12-02 21:01:41,885 | INFO     | did not find any defunct processes belonging to 24047
[2025-12-02 22:02:13] 2025-12-02 21:01:41,889 | INFO     | did not find any defunct processes belonging to 24047
[2025-12-02 22:02:13] 2025-12-02 21:01:41,889 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 22:02:13] 2025-12-02 21:01:41,889 | INFO     | ready for new job
[2025-12-02 22:02:13] 2025-12-02 21:01:41,889 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 22:02:13] 2025-12-02 21:01:41,890 | INFO     | ***************************************
[2025-12-02 22:02:13] 2025-12-02 21:01:41,890 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 22:02:13] 2025-12-02 21:01:41,890 | INFO     | ***************************************
[2025-12-02 22:02:13] 2025-12-02 21:01:41,890 | INFO     | 
[2025-12-02 22:02:13] 2025-12-02 21:01:41,905 | INFO     | architecture information:
[2025-12-02 22:02:13] 2025-12-02 21:01:41,905 | INFO     | executing command: cat /etc/os-release
[2025-12-02 22:02:13] 2025-12-02 21:01:41,910 | INFO     | cat /etc/os-release:
[2025-12-02 22:02:13] NAME="CentOS Linux"
[2025-12-02 22:02:13] VERSION="7 (Core)"
[2025-12-02 22:02:13] ID="centos"
[2025-12-02 22:02:13] ID_LIKE="rhel fedora"
[2025-12-02 22:02:13] VERSION_ID="7"
[2025-12-02 22:02:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 22:02:13] ANSI_COLOR="0;31"
[2025-12-02 22:02:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 22:02:13] HOME_URL="https://www.centos.org/"
[2025-12-02 22:02:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 22:02:13] 
[2025-12-02 22:02:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 22:02:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 22:02:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 22:02:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 22:02:13] 
[2025-12-02 22:02:13] 2025-12-02 21:01:41,910 | INFO     | ***************************************
[2025-12-02 22:02:13] 2025-12-02 21:01:42,413 | INFO     | executing command: df -mP /tmp/job_10944695/atlas/pilot/slots/0
[2025-12-02 22:02:13] 2025-12-02 21:01:42,419 | INFO     | sufficient remaining disk space (218341834752 B)
[2025-12-02 22:02:13] 2025-12-02 21:01:42,419 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 22:02:13] 2025-12-02 21:01:42,419 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 22:02:13] 2025-12-02 21:01:42,419 | INFO     | update_server=False
[2025-12-02 22:02:13] 2025-12-02 21:01:42,419 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 22:02:13] 2025-12-02 21:01:42,419 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 22:02:13] 2025-12-02 21:01:42,505 | INFO     | all job control threads have been joined
[2025-12-02 22:02:13] 2025-12-02 21:01:42,529 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 22:02:13] 2025-12-02 21:01:42,529 | INFO     | aborting loop
[2025-12-02 22:02:13] 2025-12-02 21:01:42,723 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 22:02:13] 2025-12-02 21:01:42,844 | INFO     | all data control threads have been joined
[2025-12-02 22:02:13] 2025-12-02 21:01:43,424 | INFO     | [job] retrieve thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:43,424 | INFO     | [job] queue monitor thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:43,465 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:43,498 | INFO     | [payload] validate_post thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:43,510 | INFO     | [job] control thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:43,534 | INFO     | [job] job monitor thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:43,806 | INFO     | all payload control threads have been joined
[2025-12-02 22:02:13] 2025-12-02 21:01:43,849 | INFO     | [data] control thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:43,982 | INFO     | [data] copytool_in thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:44,198 | INFO     | [job] validate thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:44,428 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:44,485 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 22:02:13] 2025-12-02 21:01:44,551 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:44,723 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:44,728 | INFO     | [data] copytool_out thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:44,731 | INFO     | [payload] failed_post thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:44,811 | INFO     | [payload] control thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:01:48,490 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 22:02:13] 2025-12-02 21:02:00,745 | INFO     | [monitor] cgroup control has ended
[2025-12-02 22:02:13] 2025-12-02 21:02:00,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-02 22:02:13] 2025-12-02 21:02:05,983 | INFO     | all workflow threads have been joined
[2025-12-02 22:02:13] 2025-12-02 21:02:05,983 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 22:02:13] 2025-12-02 21:02:05,983 | INFO     | traces error code: 0
[2025-12-02 22:02:13] 2025-12-02 21:02:05,983 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 22:02:13] 2025-12-02 21:02:12,900 | INFO     | PID=16732 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 22:02:13] 2025-12-02 21:02:12,900 | INFO     | .. there are 6 such processes running
[2025-12-02 22:02:13] 2025-12-02 21:02:12,900 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 22:02:13] 2025-12-02 21:02:12,900 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 22:02:13] 2025-12-02 21:02:12,900 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 22:02:13] 2025-12-02 21:02:12,900 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 22:02:13] 2025-12-02 21:02:12,900 | INFO     | [monitor] control thread has ended
[2025-12-02 22:02:13] 2025-12-02 21:02:12,955 [wrapper] ==== pilot stdout END ====
[2025-12-02 22:02:13] 2025-12-02 21:02:12,956 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 22:02:13] 2025-12-02 21:02:12,958 [wrapper] pilotpid: 16732
[2025-12-02 22:02:13] 2025-12-02 21:02:12,959 [wrapper] Pilot exit status: 0
[2025-12-02 22:02:13] 2025-12-02 21:02:12,963 [wrapper] pandaids: 6897309780
[2025-12-02 22:02:13] 2025-12-02 21:02:12,989 [wrapper] cleanup supervisor_pilot 14546 16733
[2025-12-02 22:02:13] 2025-12-02 21:02:12,990 [wrapper] Test setup, not cleaning
[2025-12-02 22:02:13] 2025-12-02 21:02:12,991 [wrapper] apfmon messages muted
[2025-12-02 22:02:13] 2025-12-02 21:02:12,992 [wrapper] ==== wrapper stdout END ====
[2025-12-02 22:02:13] 2025-12-02 21:02:12,993 [wrapper] ==== wrapper stderr END ====
[2025-12-02 22:02:13]  *** Error codes and diagnostics ***
[2025-12-02 22:02:13]     "exeErrorCode": 0,
[2025-12-02 22:02:13]     "exeErrorDiag": "",
[2025-12-02 22:02:13]     "pilotErrorCode": 0,
[2025-12-02 22:02:13]     "pilotErrorDiag": "",
[2025-12-02 22:02:13]  *** Listing of results directory ***
[2025-12-02 22:02:13] total 1062348
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user    576529 Nov 28 11:28 pilot3.tar.gz
[2025-12-02 22:02:13] -rwx------ 1 mf493845 unix-user     36292 Nov 28 11:29 runpilot2-wrapper.sh
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user      5112 Nov 28 11:33 queuedata.json
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user       100 Dec  2 16:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 22:02:13] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 16:28 run_atlas
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user       105 Dec  2 16:28 job.xml
[2025-12-02 22:02:13] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:04 start_atlas.sh
[2025-12-02 22:02:13] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 18:04 shared
[2025-12-02 22:02:13] -rw-r--r-- 2 mf493845 unix-user    590125 Dec  2 18:04 input.tar.gz
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user      6391 Dec  2 18:04 init_data.xml
[2025-12-02 22:02:13] -rw-r--r-- 2 mf493845 unix-user 377150614 Dec  2 18:04 EVNT.47531050._000477.pool.root.1
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user         0 Dec  2 18:04 boinc_setup_complete
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user      8192 Dec  2 18:04 boinc_mmap_file
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user         0 Dec  2 18:04 boinc_lockfile
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user      2878 Dec  2 18:04 pandaJob.out
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user    988852 Dec  2 18:04 agis_schedconf.cvmfs.json
[2025-12-02 22:02:13] drwx------ 5 mf493845 unix-user       440 Dec  2 18:04 pilot3
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user        95 Dec  2 22:01 pilot_heartbeat.json
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user 699399965 Dec  2 22:01 HITS.47531058._000930.pool.root.1
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user      1027 Dec  2 22:01 memory_monitor_summary.json
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user   1516240 Dec  2 22:01 agis_ddmendpoints.agis.ALL.json
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user   1629577 Dec  2 22:01 log.47531058._000930.job.log.tgz.1
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user     27991 Dec  2 22:01 heartbeat.json
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user       820 Dec  2 22:02 pilotlog.txt
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user   2061855 Dec  2 22:02 log.47531058._000930.job.log.1
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user       353 Dec  2 22:02 output.list
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user       620 Dec  2 22:02 runtime_log
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user   3727360 Dec  2 22:02 result.tar.gz
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user      9221 Dec  2 22:02 runtime_log.err
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user       650 Dec  2 22:02 gTrMDmEuAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgKLKDmhyPnEo.diag
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user     21684 Dec  2 22:02 stderr.txt
[2025-12-02 22:02:13] HITS file was successfully produced:
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user 699399965 Dec  2 22:01 shared/HITS.pool.root.1
[2025-12-02 22:02:13]  *** Contents of shared directory: ***
[2025-12-02 22:02:13] total 1055556
[2025-12-02 22:02:13] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:04 start_atlas.sh
[2025-12-02 22:02:13] -rw-r--r-- 2 mf493845 unix-user    590125 Dec  2 18:04 input.tar.gz
[2025-12-02 22:02:13] -rw-r--r-- 2 mf493845 unix-user 377150614 Dec  2 18:04 ATLAS.root_0
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user 699399965 Dec  2 22:01 HITS.pool.root.1
[2025-12-02 22:02:13] -rw------- 1 mf493845 unix-user   3727360 Dec  2 22:02 result.tar.gz
22:02:14 (12879): run_atlas exited; CPU time 107392.653482
22:02:14 (12879): called boinc_finish(0)

</stderr_txt>
]]>

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