Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:31:12 (15177): wrapper (7.7.26015): starting
17:31:12 (15177): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 17:31:12] Arguments: --nthreads 8
[2025-12-02 17:31:12] Threads: 8
[2025-12-02 17:31:12] Checking for CVMFS
[2025-12-02 17:31:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 17:31:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 17:31:12] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 17:31:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 17:31:12] 2.11.0.0 4656 75035 80060 153562 3 62 4068455 4096001 1864 130560 1 5469028 99.440 4926368 498 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 17:31:12] CVMFS is ok
[2025-12-02 17:31:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 17:31:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 17:31:12] Further information can be found at the LHC@home message board.
[2025-12-02 17:31:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 17:31:12] Checking for apptainer binary...
[2025-12-02 17:31:12] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 17:31:12] apptainer is not installed, using version from CVMFS
[2025-12-02 17:31:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 17:31:12] WARNING: Environment variable TMPDIR already has value [/tmp/job_10943988/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node122
[2025-12-02 17:31:12] apptainer works
[2025-12-02 17:31:12] Set ATHENA_PROC_NUMBER=8
[2025-12-02 17:31:12] Set ATHENA_CORE_NUMBER=8
[2025-12-02 17:31:12] Starting ATLAS job with PandaID=6897017205
[2025-12-02 17:31:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10943988/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 21:26:47]  *** The last 200 lines of the pilot log: ***
[2025-12-02 21:26:47] 2025-12-02 20:25:55,995 | INFO     | PID=22399 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 21:26:47] 2025-12-02 20:25:55,995 | INFO     | .. there are 5 such processes running
[2025-12-02 21:26:47] 2025-12-02 20:25:56,086 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 21:26:47] 2025-12-02 20:25:56,094 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2511.5030078125
[2025-12-02 21:26:47] 2025-12-02 20:25:56,105 | INFO     | using path: /tmp/job_10943988/atlas/pilot/slots/0/PanDA_Pilot-6897017205/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 21:26:47] 2025-12-02 20:25:56,105 | INFO     | extracted standard info from prmon json
[2025-12-02 21:26:47] 2025-12-02 20:25:56,105 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 21:26:47] 2025-12-02 20:25:56,105 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 21:26:47] 2025-12-02 20:25:56,107 | INFO     | fitting pss+swap vs Time
[2025-12-02 21:26:47] 2025-12-02 20:25:56,108 | INFO     | sum of square deviations: 3822136780.0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,109 | INFO     | sum of deviations: 1454715519705.0017
[2025-12-02 21:26:47] 2025-12-02 20:25:56,109 | INFO     | mean x: 1764700115.0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,109 | INFO     | mean y: 5085296.372294372
[2025-12-02 21:26:47] 2025-12-02 20:25:56,109 | INFO     | intersect: -671644516138.2737
[2025-12-02 21:26:47] 2025-12-02 20:25:56,109 | INFO     | chi2: 5.823200008308761
[2025-12-02 21:26:47] 2025-12-02 20:25:56,109 | INFO     | sum of square deviations: 3579276412.5
[2025-12-02 21:26:47] 2025-12-02 20:25:56,110 | INFO     | sum of deviations: 1544590283986.5
[2025-12-02 21:26:47] 2025-12-02 20:25:56,110 | INFO     | mean x: 1764699962.5
[2025-12-02 21:26:47] 2025-12-02 20:25:56,110 | INFO     | mean y: 5141303.234513274
[2025-12-02 21:26:47] 2025-12-02 20:25:56,110 | INFO     | intersect: -761528225248.0812
[2025-12-02 21:26:47] 2025-12-02 20:25:56,110 | INFO     | chi2: 4.154659878745872
[2025-12-02 21:26:47] 2025-12-02 20:25:56,110 | INFO     | current chi2=4.154659878745872 (change=28.65331994748854 %)
[2025-12-02 21:26:47] 2025-12-02 20:25:56,111 | INFO     | sum of square deviations: 3346927870.0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,111 | INFO     | sum of deviations: 1436248396480.0002
[2025-12-02 21:26:47] 2025-12-02 20:25:56,111 | INFO     | mean x: 1764699810.0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,111 | INFO     | mean y: 5070189.918552036
[2025-12-02 21:26:47] 2025-12-02 20:25:56,112 | INFO     | intersect: -757270667688.789
[2025-12-02 21:26:47] 2025-12-02 20:25:56,112 | INFO     | chi2: 4.084774438835209
[2025-12-02 21:26:47] 2025-12-02 20:25:56,112 | INFO     | current chi2=4.084774438835209 (change=1.6820977396532015 %)
[2025-12-02 21:26:47] 2025-12-02 20:25:56,112 | INFO     | right removable region: 220
[2025-12-02 21:26:47] 2025-12-02 20:25:56,112 | INFO     | sum of square deviations: 3579276412.5
[2025-12-02 21:26:47] 2025-12-02 20:25:56,113 | INFO     | sum of deviations: 1344236731896.0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,113 | INFO     | mean x: 1764700267.5
[2025-12-02 21:26:47] 2025-12-02 20:25:56,113 | INFO     | mean y: 5154369.07079646
[2025-12-02 21:26:47] 2025-12-02 20:25:56,113 | INFO     | intersect: -662747493645.4242
[2025-12-02 21:26:47] 2025-12-02 20:25:56,113 | INFO     | chi2: 4.259850734246996
[2025-12-02 21:26:47] 2025-12-02 20:25:56,113 | INFO     | current chi2=4.259850734246996 (change=26.846910149593338 %)
[2025-12-02 21:26:47] 2025-12-02 20:25:56,113 | INFO     | sum of square deviations: 3346927870.0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,114 | INFO     | sum of deviations: 1276532016813.9998
[2025-12-02 21:26:47] 2025-12-02 20:25:56,114 | INFO     | mean x: 1764700420.0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,114 | INFO     | mean y: 5198803.923076923
[2025-12-02 21:26:47] 2025-12-02 20:25:56,114 | INFO     | intersect: -673058779182.2869
[2025-12-02 21:26:47] 2025-12-02 20:25:56,114 | INFO     | chi2: 4.070644661607682
[2025-12-02 21:26:47] 2025-12-02 20:25:56,114 | INFO     | current chi2=4.070644661607682 (change=4.441612733474315 %)
[2025-12-02 21:26:47] 2025-12-02 20:25:56,114 | INFO     | left removable region: 20
[2025-12-02 21:26:47] 2025-12-02 20:25:56,115 | INFO     | sum of square deviations: 2480604650.0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,115 | INFO     | sum of deviations: 1126629612693.0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,115 | INFO     | mean x: 1764700389.5
[2025-12-02 21:26:47] 2025-12-02 20:25:56,115 | INFO     | mean y: 5267951.82
[2025-12-02 21:26:47] 2025-12-02 20:25:56,115 | INFO     | intersect: -801478239845.9951
[2025-12-02 21:26:47] 2025-12-02 20:25:56,115 | INFO     | chi2: 1.426419683640254
[2025-12-02 21:26:47] 2025-12-02 20:25:56,116 | INFO     | current memory leak: 454.18 B/s (using 200 data points, chi2=1.43)
[2025-12-02 21:26:47] 2025-12-02 20:25:56,116 | INFO     | could have reported an average CPU frequency of 2530 MHz (11 samples)
[2025-12-02 21:26:47] 2025-12-02 20:25:56,116 | INFO     | ..............................
[2025-12-02 21:26:47] 2025-12-02 20:25:56,116 | INFO     | . Timing measurements:
[2025-12-02 21:26:47] 2025-12-02 20:25:56,116 | INFO     | . get job = 0 s
[2025-12-02 21:26:47] 2025-12-02 20:25:56,116 | INFO     | . initial setup = 1 s
[2025-12-02 21:26:47] 2025-12-02 20:25:56,116 | INFO     | . payload setup = 5 s
[2025-12-02 21:26:47] 2025-12-02 20:25:56,116 | INFO     | . stage-in = 0 s
[2025-12-02 21:26:47] 2025-12-02 20:25:56,116 | INFO     | . payload execution = 14052 s
[2025-12-02 21:26:47] 2025-12-02 20:25:56,116 | INFO     | . stage-out = 1 s
[2025-12-02 21:26:47] 2025-12-02 20:25:56,116 | INFO     | . log creation = 0 s
[2025-12-02 21:26:47] 2025-12-02 20:25:56,116 | INFO     | ..............................
[2025-12-02 21:26:47] 2025-12-02 20:25:56,168 | INFO     | 
[2025-12-02 21:26:47] 2025-12-02 20:25:56,168 | INFO     | job summary report
[2025-12-02 21:26:47] 2025-12-02 20:25:56,168 | INFO     | --------------------------------------------------
[2025-12-02 21:26:47] 2025-12-02 20:25:56,168 | INFO     | PanDA job id: 6897017205
[2025-12-02 21:26:47] 2025-12-02 20:25:56,168 | INFO     | task id: 47531058
[2025-12-02 21:26:47] 2025-12-02 20:25:56,168 | INFO     | errors: (none)
[2025-12-02 21:26:47] 2025-12-02 20:25:56,168 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 21:26:47] 2025-12-02 20:25:56,168 | INFO     | pilot state: finished 
[2025-12-02 21:26:47] 2025-12-02 20:25:56,168 | INFO     | transexitcode: 0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,168 | INFO     | exeerrorcode: 0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,168 | INFO     | exeerrordiag: 
[2025-12-02 21:26:47] 2025-12-02 20:25:56,168 | INFO     | exitcode: 0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,168 | INFO     | exitmsg: OK
[2025-12-02 21:26:47] 2025-12-02 20:25:56,169 | INFO     | cpuconsumptiontime: 108033 s
[2025-12-02 21:26:47] 2025-12-02 20:25:56,169 | INFO     | nevents: 1000
[2025-12-02 21:26:47] 2025-12-02 20:25:56,169 | INFO     | neventsw: 0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,169 | INFO     | pid: 14957
[2025-12-02 21:26:47] 2025-12-02 20:25:56,169 | INFO     | pgrp: 14957
[2025-12-02 21:26:47] 2025-12-02 20:25:56,169 | INFO     | corecount: 8
[2025-12-02 21:26:47] 2025-12-02 20:25:56,169 | INFO     | event service: False
[2025-12-02 21:26:47] 2025-12-02 20:25:56,169 | INFO     | sizes: {0: 2284575, 2: 2284837, 11: 2284865, 14061: 2334906, 14062: 2343986, 14064: 2344176}
[2025-12-02 21:26:47] 2025-12-02 20:25:56,169 | INFO     | --------------------------------------------------
[2025-12-02 21:26:47] 2025-12-02 20:25:56,169 | INFO     | 
[2025-12-02 21:26:47] 2025-12-02 20:25:56,169 | INFO     | executing command: ls -lF /tmp/job_10943988/atlas/pilot/slots/0
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,181 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 21:26:47] 2025-12-02 20:25:56,182 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,182 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 21:26:47] 2025-12-02 20:25:56,182 | INFO     | job 6897017205 has completed (purged errors)
[2025-12-02 21:26:47] 2025-12-02 20:25:56,182 | INFO     | overall cleanup function is called
[2025-12-02 21:26:47] 2025-12-02 20:25:57,189 | INFO     | --- collectZombieJob: --- 10, [14957]
[2025-12-02 21:26:47] 2025-12-02 20:25:57,189 | INFO     | zombie collector waiting for pid 14957
[2025-12-02 21:26:47] 2025-12-02 20:25:57,189 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 21:26:47] 2025-12-02 20:25:57,189 | INFO     | collected zombie processes
[2025-12-02 21:26:47] 2025-12-02 20:25:57,189 | INFO     | will attempt to kill all subprocesses of pid=14957
[2025-12-02 21:26:47] 2025-12-02 20:25:57,368 | INFO     | process IDs to be killed: [14957] (in reverse order)
[2025-12-02 21:26:47] 2025-12-02 20:25:57,430 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 21:26:47] 2025-12-02 20:25:57,430 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 21:26:47] 2025-12-02 20:25:57,437 | INFO     | did not find any defunct processes belonging to 14957
[2025-12-02 21:26:47] 2025-12-02 20:25:57,442 | INFO     | did not find any defunct processes belonging to 14957
[2025-12-02 21:26:47] 2025-12-02 20:25:57,443 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 21:26:47] 2025-12-02 20:25:57,443 | INFO     | ready for new job
[2025-12-02 21:26:47] 2025-12-02 20:25:57,443 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 21:26:47] 2025-12-02 20:25:57,444 | INFO     | ***************************************
[2025-12-02 21:26:47] 2025-12-02 20:25:57,444 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 21:26:47] 2025-12-02 20:25:57,444 | INFO     | ***************************************
[2025-12-02 21:26:47] 2025-12-02 20:25:57,444 | INFO     | 
[2025-12-02 21:26:47] 2025-12-02 20:25:57,460 | INFO     | architecture information:
[2025-12-02 21:26:47] 2025-12-02 20:25:57,461 | INFO     | executing command: cat /etc/os-release
[2025-12-02 21:26:47] 2025-12-02 20:25:57,469 | INFO     | cat /etc/os-release:
[2025-12-02 21:26:47] NAME="CentOS Linux"
[2025-12-02 21:26:47] VERSION="7 (Core)"
[2025-12-02 21:26:47] ID="centos"
[2025-12-02 21:26:47] ID_LIKE="rhel fedora"
[2025-12-02 21:26:47] VERSION_ID="7"
[2025-12-02 21:26:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 21:26:47] ANSI_COLOR="0;31"
[2025-12-02 21:26:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 21:26:47] HOME_URL="https://www.centos.org/"
[2025-12-02 21:26:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 21:26:47] 
[2025-12-02 21:26:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 21:26:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 21:26:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 21:26:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 21:26:47] 
[2025-12-02 21:26:47] 2025-12-02 20:25:57,469 | INFO     | ***************************************
[2025-12-02 21:26:47] 2025-12-02 20:25:57,972 | INFO     | executing command: df -mP /tmp/job_10943988/atlas/pilot/slots/0
[2025-12-02 21:26:47] 2025-12-02 20:25:57,979 | INFO     | sufficient remaining disk space (218939523072 B)
[2025-12-02 21:26:47] 2025-12-02 20:25:57,979 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 21:26:47] 2025-12-02 20:25:57,979 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 21:26:47] 2025-12-02 20:25:57,979 | INFO     | update_server=False
[2025-12-02 21:26:47] 2025-12-02 20:25:57,979 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 21:26:47] 2025-12-02 20:25:57,980 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 21:26:47] 2025-12-02 20:25:58,128 | INFO     | all job control threads have been joined
[2025-12-02 21:26:47] 2025-12-02 20:25:58,271 | INFO     | all data control threads have been joined
[2025-12-02 21:26:47] 2025-12-02 20:25:58,715 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 21:26:47] 2025-12-02 20:25:58,715 | INFO     | aborting loop
[2025-12-02 21:26:47] 2025-12-02 20:25:58,983 | INFO     | [job] retrieve thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:25:58,985 | INFO     | [job] queue monitor thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:25:59,022 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:25:59,133 | INFO     | [job] control thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:25:59,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 21:26:47] 2025-12-02 20:25:59,276 | INFO     | [data] control thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:25:59,301 | INFO     | all payload control threads have been joined
[2025-12-02 21:26:47] 2025-12-02 20:25:59,383 | INFO     | job.realtimelogging is not enabled
[2025-12-02 21:26:47] 2025-12-02 20:25:59,506 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:25:59,662 | INFO     | [data] copytool_in thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:25:59,720 | INFO     | [job] job monitor thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:25:59,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 21:26:47] 2025-12-02 20:25:59,961 | INFO     | [payload] validate_post thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:26:00,082 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:26:00,142 | INFO     | [job] validate thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:26:00,259 | INFO     | [payload] failed_post thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:26:00,306 | INFO     | [payload] control thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:26:00,388 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:26:01,165 | INFO     | [data] copytool_out thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:26:03,731 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 21:26:47] 2025-12-02 20:26:28,285 | INFO     | PID=22399 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 21:26:47] 2025-12-02 20:26:28,285 | INFO     | .. there are 5 such processes running
[2025-12-02 21:26:47] 2025-12-02 20:26:28,285 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 21:26:47] 2025-12-02 20:26:28,285 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 21:26:47] 2025-12-02 20:26:28,285 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 21:26:47] 2025-12-02 20:26:41,483 | INFO     | [monitor] cgroup control has ended
[2025-12-02 21:26:47] 2025-12-02 20:26:42,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456048211712)>']
[2025-12-02 21:26:47] 2025-12-02 20:26:43,361 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 21:26:47] 2025-12-02 20:26:43,361 | INFO     | [monitor] control thread has ended
[2025-12-02 21:26:47] 2025-12-02 20:26:47,513 | INFO     | all workflow threads have been joined
[2025-12-02 21:26:47] 2025-12-02 20:26:47,513 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 21:26:47] 2025-12-02 20:26:47,513 | INFO     | traces error code: 0
[2025-12-02 21:26:47] 2025-12-02 20:26:47,513 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 21:26:47] 2025-12-02 20:26:47,575 [wrapper] ==== pilot stdout END ====
[2025-12-02 21:26:47] 2025-12-02 20:26:47,577 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 21:26:47] 2025-12-02 20:26:47,579 [wrapper] pilotpid: 22399
[2025-12-02 21:26:47] 2025-12-02 20:26:47,580 [wrapper] Pilot exit status: 0
[2025-12-02 21:26:47] 2025-12-02 20:26:47,585 [wrapper] pandaids: 6897017205
[2025-12-02 21:26:47] 2025-12-02 20:26:47,624 [wrapper] cleanup supervisor_pilot  9389 22400
[2025-12-02 21:26:47] 2025-12-02 20:26:47,625 [wrapper] Test setup, not cleaning
[2025-12-02 21:26:47] 2025-12-02 20:26:47,627 [wrapper] apfmon messages muted
[2025-12-02 21:26:47] 2025-12-02 20:26:47,628 [wrapper] ==== wrapper stdout END ====
[2025-12-02 21:26:47] 2025-12-02 20:26:47,630 [wrapper] ==== wrapper stderr END ====
[2025-12-02 21:26:47]  *** Error codes and diagnostics ***
[2025-12-02 21:26:47]     "exeErrorCode": 0,
[2025-12-02 21:26:47]     "exeErrorDiag": "",
[2025-12-02 21:26:47]     "pilotErrorCode": 0,
[2025-12-02 21:26:47]     "pilotErrorDiag": "",
[2025-12-02 21:26:47]  *** Listing of results directory ***
[2025-12-02 21:26:47] total 1051552
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user    576529 Nov 28 11:28 pilot3.tar.gz
[2025-12-02 21:26:47] -rwx------ 1 mf493845 unix-user     36292 Nov 28 11:28 runpilot2-wrapper.sh
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user      5112 Nov 28 11:30 queuedata.json
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user       100 Dec  2 15:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 21:26:47] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 15:55 run_atlas
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user       105 Dec  2 15:55 job.xml
[2025-12-02 21:26:47] -rw-r--r-- 2 mf493845 unix-user 375476182 Dec  2 17:31 EVNT.47531050._000456.pool.root.1
[2025-12-02 21:26:47] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 17:31 start_atlas.sh
[2025-12-02 21:26:47] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 17:31 shared
[2025-12-02 21:26:47] -rw-r--r-- 2 mf493845 unix-user    590126 Dec  2 17:31 input.tar.gz
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user      6391 Dec  2 17:31 init_data.xml
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user         0 Dec  2 17:31 boinc_setup_complete
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user      8192 Dec  2 17:31 boinc_mmap_file
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user         0 Dec  2 17:31 boinc_lockfile
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user      2878 Dec  2 17:31 pandaJob.out
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user    988852 Dec  2 17:31 agis_schedconf.cvmfs.json
[2025-12-02 21:26:47] drwx------ 5 mf493845 unix-user       440 Dec  2 17:31 pilot3
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user 690135519 Dec  2 21:25 HITS.47531058._000715.pool.root.1
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user        95 Dec  2 21:25 pilot_heartbeat.json
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user      1034 Dec  2 21:25 memory_monitor_summary.json
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user   1516240 Dec  2 21:25 agis_ddmendpoints.agis.ALL.json
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user   1637822 Dec  2 21:25 log.47531058._000715.job.log.tgz.1
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user     27490 Dec  2 21:25 heartbeat.json
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user      4907 Dec  2 21:26 pilotlog.txt
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user   1990988 Dec  2 21:26 log.47531058._000715.job.log.1
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user       353 Dec  2 21:26 output.list
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user       620 Dec  2 21:26 runtime_log
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user   3665920 Dec  2 21:26 result.tar.gz
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user      9221 Dec  2 21:26 runtime_log.err
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user       651 Dec  2 21:26 aVAMDmXtAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVTOKDmmTle1m.diag
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user     21711 Dec  2 21:26 stderr.txt
[2025-12-02 21:26:47] HITS file was successfully produced:
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user 690135519 Dec  2 21:25 shared/HITS.pool.root.1
[2025-12-02 21:26:47]  *** Contents of shared directory: ***
[2025-12-02 21:26:47] total 1044816
[2025-12-02 21:26:47] -rw-r--r-- 2 mf493845 unix-user 375476182 Dec  2 17:31 ATLAS.root_0
[2025-12-02 21:26:47] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 17:31 start_atlas.sh
[2025-12-02 21:26:47] -rw-r--r-- 2 mf493845 unix-user    590126 Dec  2 17:31 input.tar.gz
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user 690135519 Dec  2 21:25 HITS.pool.root.1
[2025-12-02 21:26:47] -rw------- 1 mf493845 unix-user   3665920 Dec  2 21:26 result.tar.gz
21:26:49 (15177): run_atlas exited; CPU time 108319.087275
21:26:49 (15177): called boinc_finish(0)

</stderr_txt>
]]>

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