Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:47:21 (32326): wrapper (7.7.26015): starting
18:47:21 (32326): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 18:47:21] Arguments: --nthreads 8
[2025-12-02 18:47:21] Threads: 8
[2025-12-02 18:47:21] Checking for CVMFS
[2025-12-02 18:47:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:47:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:47:21] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:47:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:47:21] 2.11.0.0 3958 74770 96848 153564 0 78 3186462 4096000 1926 130560 2 7311842 99.525 6545572 620 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 18:47:21] CVMFS is ok
[2025-12-02 18:47:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 18:47:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 18:47:21] Further information can be found at the LHC@home message board.
[2025-12-02 18:47:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:47:21] Checking for apptainer binary...
[2025-12-02 18:47:21] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 18:47:21] apptainer is not installed, using version from CVMFS
[2025-12-02 18:47:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:47:22] WARNING: Environment variable TMPDIR already has value [/tmp/job_10944817/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node100
[2025-12-02 18:47:22] apptainer works
[2025-12-02 18:47:22] Set ATHENA_PROC_NUMBER=8
[2025-12-02 18:47:22] Set ATHENA_CORE_NUMBER=8
[2025-12-02 18:47:22] Starting ATLAS job with PandaID=6894266228
[2025-12-02 18:47:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10944817/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 23:19:59]  *** The last 200 lines of the pilot log: ***
[2025-12-02 23:19:59] 2025-12-02 22:19:20,468 | INFO     | number of running child processes to parent process 17082: 1
[2025-12-02 23:19:59] 2025-12-02 22:19:20,468 | INFO     | maximum number of monitored processes: 16
[2025-12-02 23:19:59] 2025-12-02 22:19:21,544 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 23:19:59] 2025-12-02 22:19:21,548 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2645.0816250000003
[2025-12-02 23:19:59] 2025-12-02 22:19:21,554 | INFO     | using path: /tmp/job_10944817/atlas/pilot/slots/0/PanDA_Pilot-6894266228/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 23:19:59] 2025-12-02 22:19:21,554 | INFO     | extracted standard info from prmon json
[2025-12-02 23:19:59] 2025-12-02 22:19:21,554 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 23:19:59] 2025-12-02 22:19:21,554 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 23:19:59] 2025-12-02 22:19:21,556 | INFO     | fitting pss+swap vs Time
[2025-12-02 23:19:59] 2025-12-02 22:19:21,557 | INFO     | sum of square deviations: 5902093918.0
[2025-12-02 23:19:59] 2025-12-02 22:19:21,558 | INFO     | sum of deviations: 147069339092.0
[2025-12-02 23:19:59] 2025-12-02 22:19:21,558 | INFO     | mean x: 1764705785.0
[2025-12-02 23:19:59] 2025-12-02 22:19:21,558 | INFO     | mean y: 2888432.033707865
[2025-12-02 23:19:59] 2025-12-02 22:19:21,558 | INFO     | intersect: -43970338205.42473
[2025-12-02 23:19:59] 2025-12-02 22:19:21,558 | INFO     | chi2: 3.7190992627716573
[2025-12-02 23:19:59] 2025-12-02 22:19:21,558 | INFO     | sum of square deviations: 5576683165.5
[2025-12-02 23:19:59] 2025-12-02 22:19:21,559 | INFO     | sum of deviations: 196076327616.50003
[2025-12-02 23:19:59] 2025-12-02 22:19:21,559 | INFO     | mean x: 1764705632.5
[2025-12-02 23:19:59] 2025-12-02 22:19:21,559 | INFO     | mean y: 2911211.1335877865
[2025-12-02 23:19:59] 2025-12-02 22:19:21,559 | INFO     | intersect: -62044185508.5398
[2025-12-02 23:19:59] 2025-12-02 22:19:21,559 | INFO     | chi2: 2.0905625359856326
[2025-12-02 23:19:59] 2025-12-02 22:19:21,559 | INFO     | current chi2=2.0905625359856326 (change=43.788471662688515 %)
[2025-12-02 23:19:59] 2025-12-02 22:19:21,560 | INFO     | sum of square deviations: 5263458688.0
[2025-12-02 23:19:59] 2025-12-02 22:19:21,561 | INFO     | sum of deviations: 188527854891.99997
[2025-12-02 23:19:59] 2025-12-02 22:19:21,561 | INFO     | mean x: 1764705480.0
[2025-12-02 23:19:59] 2025-12-02 22:19:21,561 | INFO     | mean y: 2907534.902723735
[2025-12-02 23:19:59] 2025-12-02 22:19:21,561 | INFO     | intersect: -63205746390.52107
[2025-12-02 23:19:59] 2025-12-02 22:19:21,561 | INFO     | chi2: 2.08985871363929
[2025-12-02 23:19:59] 2025-12-02 22:19:21,561 | INFO     | current chi2=2.08985871363929 (change=0.03366664877168422 %)
[2025-12-02 23:19:59] 2025-12-02 22:19:21,561 | INFO     | right removable region: 256
[2025-12-02 23:19:59] 2025-12-02 22:19:21,561 | INFO     | sum of square deviations: 5576683165.5
[2025-12-02 23:19:59] 2025-12-02 22:19:21,562 | INFO     | sum of deviations: 81276250275.5
[2025-12-02 23:19:59] 2025-12-02 22:19:21,562 | INFO     | mean x: 1764705937.5
[2025-12-02 23:19:59] 2025-12-02 22:19:21,562 | INFO     | mean y: 2919082.8740458013
[2025-12-02 23:19:59] 2025-12-02 22:19:21,562 | INFO     | intersect: -25716433654.65075
[2025-12-02 23:19:59] 2025-12-02 22:19:21,562 | INFO     | chi2: 1.7101133507540163
[2025-12-02 23:19:59] 2025-12-02 22:19:21,562 | INFO     | current chi2=1.7101133507540163 (change=54.01807722981948 %)
[2025-12-02 23:19:59] 2025-12-02 22:19:21,563 | INFO     | sum of square deviations: 5263458688.0
[2025-12-02 23:19:59] 2025-12-02 22:19:21,563 | INFO     | sum of deviations: 67758816530.99998
[2025-12-02 23:19:59] 2025-12-02 22:19:21,564 | INFO     | mean x: 1764706090.0
[2025-12-02 23:19:59] 2025-12-02 22:19:21,564 | INFO     | mean y: 2925655.5058365758
[2025-12-02 23:19:59] 2025-12-02 22:19:21,564 | INFO     | intersect: -22714911278.61172
[2025-12-02 23:19:59] 2025-12-02 22:19:21,564 | INFO     | chi2: 1.6848014071903066
[2025-12-02 23:19:59] 2025-12-02 22:19:21,564 | INFO     | current chi2=1.6848014071903066 (change=1.4801325042313278 %)
[2025-12-02 23:19:59] 2025-12-02 22:19:21,564 | INFO     | left removable region: 20
[2025-12-02 23:19:59] 2025-12-02 22:19:21,564 | INFO     | sum of square deviations: 4075741535.0
[2025-12-02 23:19:59] 2025-12-02 22:19:21,565 | INFO     | sum of deviations: 89894861981.99998
[2025-12-02 23:19:59] 2025-12-02 22:19:21,565 | INFO     | mean x: 1764706059.5
[2025-12-02 23:19:59] 2025-12-02 22:19:21,565 | INFO     | mean y: 2957475.1779661016
[2025-12-02 23:19:59] 2025-12-02 22:19:21,565 | INFO     | intersect: -38919532161.43526
[2025-12-02 23:19:59] 2025-12-02 22:19:21,565 | INFO     | chi2: 0.01345816245772343
[2025-12-02 23:19:59] 2025-12-02 22:19:21,565 | INFO     | current memory leak: 22.06 B/s (using 236 data points, chi2=0.01)
[2025-12-02 23:19:59] 2025-12-02 22:19:21,565 | INFO     | could have reported an average CPU frequency of 3004 MHz (12 samples)
[2025-12-02 23:19:59] 2025-12-02 22:19:21,565 | INFO     | ..............................
[2025-12-02 23:19:59] 2025-12-02 22:19:21,565 | INFO     | . Timing measurements:
[2025-12-02 23:19:59] 2025-12-02 22:19:21,565 | INFO     | . get job = 0 s
[2025-12-02 23:19:59] 2025-12-02 22:19:21,566 | INFO     | . initial setup = 1 s
[2025-12-02 23:19:59] 2025-12-02 22:19:21,566 | INFO     | . payload setup = 2 s
[2025-12-02 23:19:59] 2025-12-02 22:19:21,566 | INFO     | . stage-in = 0 s
[2025-12-02 23:19:59] 2025-12-02 22:19:21,566 | INFO     | . payload execution = 16284 s
[2025-12-02 23:19:59] 2025-12-02 22:19:21,566 | INFO     | . stage-out = 1 s
[2025-12-02 23:19:59] 2025-12-02 22:19:21,566 | INFO     | . log creation = 0 s
[2025-12-02 23:19:59] 2025-12-02 22:19:21,566 | INFO     | ..............................
[2025-12-02 23:19:59] 2025-12-02 22:19:21,614 | INFO     | 
[2025-12-02 23:19:59] 2025-12-02 22:19:21,614 | INFO     | job summary report
[2025-12-02 23:19:59] 2025-12-02 22:19:21,614 | INFO     | --------------------------------------------------
[2025-12-02 23:19:59] 2025-12-02 22:19:21,614 | INFO     | PanDA job id: 6894266228
[2025-12-02 23:19:59] 2025-12-02 22:19:21,614 | INFO     | task id: 47533967
[2025-12-02 23:19:59] 2025-12-02 22:19:21,614 | INFO     | errors: (none)
[2025-12-02 23:19:59] 2025-12-02 22:19:21,614 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 23:19:59] 2025-12-02 22:19:21,614 | INFO     | pilot state: finished 
[2025-12-02 23:19:59] 2025-12-02 22:19:21,614 | INFO     | transexitcode: 0
[2025-12-02 23:19:59] 2025-12-02 22:19:21,614 | INFO     | exeerrorcode: 0
[2025-12-02 23:19:59] 2025-12-02 22:19:21,614 | INFO     | exeerrordiag: 
[2025-12-02 23:19:59] 2025-12-02 22:19:21,614 | INFO     | exitcode: 0
[2025-12-02 23:19:59] 2025-12-02 22:19:21,615 | INFO     | exitmsg: OK
[2025-12-02 23:19:59] 2025-12-02 22:19:21,615 | INFO     | cpuconsumptiontime: 122129 s
[2025-12-02 23:19:59] 2025-12-02 22:19:21,615 | INFO     | nevents: 1000
[2025-12-02 23:19:59] 2025-12-02 22:19:21,615 | INFO     | neventsw: 0
[2025-12-02 23:19:59] 2025-12-02 22:19:21,615 | INFO     | pid: 17082
[2025-12-02 23:19:59] 2025-12-02 22:19:21,615 | INFO     | pgrp: 17082
[2025-12-02 23:19:59] 2025-12-02 22:19:21,615 | INFO     | corecount: 8
[2025-12-02 23:19:59] 2025-12-02 22:19:21,615 | INFO     | event service: False
[2025-12-02 23:19:59] 2025-12-02 22:19:21,615 | INFO     | sizes: {0: 2283487, 6: 2284103, 7: 2284497, 9: 2284759, 18: 2284787, 16290: 2317208, 16291: 2326288, 16294: 2326478}
[2025-12-02 23:19:59] 2025-12-02 22:19:21,615 | INFO     | --------------------------------------------------
[2025-12-02 23:19:59] 2025-12-02 22:19:21,615 | INFO     | 
[2025-12-02 23:19:59] 2025-12-02 22:19:21,615 | INFO     | executing command: ls -lF /tmp/job_10944817/atlas/pilot/slots/0
[2025-12-02 23:19:59] 2025-12-02 22:19:21,623 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,623 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,623 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,623 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | job 6894266228 has completed (purged errors)
[2025-12-02 23:19:59] 2025-12-02 22:19:21,624 | INFO     | overall cleanup function is called
[2025-12-02 23:19:59] 2025-12-02 22:19:22,631 | INFO     | --- collectZombieJob: --- 10, [17082]
[2025-12-02 23:19:59] 2025-12-02 22:19:22,632 | INFO     | zombie collector waiting for pid 17082
[2025-12-02 23:19:59] 2025-12-02 22:19:22,632 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 23:19:59] 2025-12-02 22:19:22,632 | INFO     | collected zombie processes
[2025-12-02 23:19:59] 2025-12-02 22:19:22,632 | INFO     | will attempt to kill all subprocesses of pid=17082
[2025-12-02 23:19:59] 2025-12-02 22:19:22,739 | INFO     | process IDs to be killed: [17082] (in reverse order)
[2025-12-02 23:19:59] 2025-12-02 22:19:22,778 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 23:19:59] 2025-12-02 22:19:22,778 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 23:19:59] 2025-12-02 22:19:22,782 | INFO     | did not find any defunct processes belonging to 17082
[2025-12-02 23:19:59] 2025-12-02 22:19:22,785 | INFO     | did not find any defunct processes belonging to 17082
[2025-12-02 23:19:59] 2025-12-02 22:19:22,785 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 23:19:59] 2025-12-02 22:19:22,785 | INFO     | ready for new job
[2025-12-02 23:19:59] 2025-12-02 22:19:22,785 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 23:19:59] 2025-12-02 22:19:22,786 | INFO     | ***************************************
[2025-12-02 23:19:59] 2025-12-02 22:19:22,786 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 23:19:59] 2025-12-02 22:19:22,786 | INFO     | ***************************************
[2025-12-02 23:19:59] 2025-12-02 22:19:22,786 | INFO     | 
[2025-12-02 23:19:59] 2025-12-02 22:19:22,801 | INFO     | architecture information:
[2025-12-02 23:19:59] 2025-12-02 22:19:22,801 | INFO     | executing command: cat /etc/os-release
[2025-12-02 23:19:59] 2025-12-02 22:19:22,807 | INFO     | cat /etc/os-release:
[2025-12-02 23:19:59] NAME="CentOS Linux"
[2025-12-02 23:19:59] VERSION="7 (Core)"
[2025-12-02 23:19:59] ID="centos"
[2025-12-02 23:19:59] ID_LIKE="rhel fedora"
[2025-12-02 23:19:59] VERSION_ID="7"
[2025-12-02 23:19:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 23:19:59] ANSI_COLOR="0;31"
[2025-12-02 23:19:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 23:19:59] HOME_URL="https://www.centos.org/"
[2025-12-02 23:19:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 23:19:59] 
[2025-12-02 23:19:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 23:19:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 23:19:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 23:19:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 23:19:59] 
[2025-12-02 23:19:59] 2025-12-02 22:19:22,807 | INFO     | ***************************************
[2025-12-02 23:19:59] 2025-12-02 22:19:23,310 | INFO     | executing command: df -mP /tmp/job_10944817/atlas/pilot/slots/0
[2025-12-02 23:19:59] 2025-12-02 22:19:23,316 | INFO     | sufficient remaining disk space (219335884800 B)
[2025-12-02 23:19:59] 2025-12-02 22:19:23,317 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 23:19:59] 2025-12-02 22:19:23,317 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 23:19:59] 2025-12-02 22:19:23,317 | INFO     | update_server=False
[2025-12-02 23:19:59] 2025-12-02 22:19:23,317 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 23:19:59] 2025-12-02 22:19:23,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:19:59] 2025-12-02 22:19:23,391 | INFO     | job.realtimelogging is not enabled
[2025-12-02 23:19:59] 2025-12-02 22:19:23,921 | INFO     | all data control threads have been joined
[2025-12-02 23:19:59] 2025-12-02 22:19:23,976 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:19:59] 2025-12-02 22:19:23,976 | INFO     | aborting loop
[2025-12-02 23:19:59] 2025-12-02 22:19:24,114 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 23:19:59] 2025-12-02 22:19:24,321 | INFO     | [job] retrieve thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:24,321 | INFO     | [job] queue monitor thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:24,327 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:24,396 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:24,589 | INFO     | all payload control threads have been joined
[2025-12-02 23:19:59] 2025-12-02 22:19:24,736 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 23:19:59] 2025-12-02 22:19:24,747 | INFO     | [payload] validate_post thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:24,823 | INFO     | all job control threads have been joined
[2025-12-02 23:19:59] 2025-12-02 22:19:24,926 | INFO     | [data] control thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:24,927 | INFO     | [payload] failed_post thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:24,968 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:24,981 | INFO     | [job] job monitor thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:25,021 | INFO     | [job] validate thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:25,594 | INFO     | [payload] control thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:25,732 | INFO     | [data] copytool_in thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:25,801 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:25,823 | INFO     | [job] control thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:26,119 | INFO     | [data] copytool_out thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:28,742 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 23:19:59] 2025-12-02 22:19:52,940 | INFO     | PID=10687 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 23:19:59] 2025-12-02 22:19:52,940 | INFO     | .. there are 5 such processes running
[2025-12-02 23:19:59] 2025-12-02 22:19:52,940 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 23:19:59] 2025-12-02 22:19:52,940 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 23:19:59] 2025-12-02 22:19:52,940 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 23:19:59] 2025-12-02 22:19:53,850 | INFO     | [monitor] cgroup control has ended
[2025-12-02 23:19:59] 2025-12-02 22:19:54,751 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-02 23:19:59] 2025-12-02 22:19:54,950 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 23:19:59] 2025-12-02 22:19:54,950 | INFO     | [monitor] control thread has ended
[2025-12-02 23:19:59] 2025-12-02 22:19:59,777 | INFO     | all workflow threads have been joined
[2025-12-02 23:19:59] 2025-12-02 22:19:59,777 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 23:19:59] 2025-12-02 22:19:59,777 | INFO     | traces error code: 0
[2025-12-02 23:19:59] 2025-12-02 22:19:59,777 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 23:19:59] 2025-12-02 22:19:59,830 [wrapper] ==== pilot stdout END ====
[2025-12-02 23:19:59] 2025-12-02 22:19:59,831 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 23:19:59] 2025-12-02 22:19:59,832 [wrapper] pilotpid: 10687
[2025-12-02 23:19:59] 2025-12-02 22:19:59,834 [wrapper] Pilot exit status: 0
[2025-12-02 23:19:59] 2025-12-02 22:19:59,838 [wrapper] pandaids: 6894266228
[2025-12-02 23:19:59] 2025-12-02 22:19:59,863 [wrapper] cleanup supervisor_pilot  7574 10688
[2025-12-02 23:19:59] 2025-12-02 22:19:59,865 [wrapper] Test setup, not cleaning
[2025-12-02 23:19:59] 2025-12-02 22:19:59,866 [wrapper] apfmon messages muted
[2025-12-02 23:19:59] 2025-12-02 22:19:59,867 [wrapper] ==== wrapper stdout END ====
[2025-12-02 23:19:59] 2025-12-02 22:19:59,868 [wrapper] ==== wrapper stderr END ====
[2025-12-02 23:19:59]  *** Error codes and diagnostics ***
[2025-12-02 23:19:59]     "exeErrorCode": 0,
[2025-12-02 23:19:59]     "exeErrorDiag": "",
[2025-12-02 23:19:59]     "pilotErrorCode": 0,
[2025-12-02 23:19:59]     "pilotErrorDiag": "",
[2025-12-02 23:19:59]  *** Listing of results directory ***
[2025-12-02 23:20:00] total 1309312
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user    576529 Nov 21 06:09 pilot3.tar.gz
[2025-12-02 23:20:00] -rwx------ 1 mf493845 unix-user     36292 Nov 21 06:13 runpilot2-wrapper.sh
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user      5112 Nov 21 06:13 queuedata.json
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user       100 Dec  2 17:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 23:20:00] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 17:03 run_atlas
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user       105 Dec  2 17:03 job.xml
[2025-12-02 23:20:00] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:47 start_atlas.sh
[2025-12-02 23:20:00] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 18:47 shared
[2025-12-02 23:20:00] -rw-r--r-- 2 mf493845 unix-user    590108 Dec  2 18:47 input.tar.gz
[2025-12-02 23:20:00] -rw-r--r-- 2 mf493845 unix-user 409149108 Dec  2 18:47 EVNT.47493127._002227.pool.root.1
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user         0 Dec  2 18:47 boinc_setup_complete
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user      6392 Dec  2 18:47 init_data.xml
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user      8192 Dec  2 18:47 boinc_mmap_file
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user         0 Dec  2 18:47 boinc_lockfile
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user      2786 Dec  2 18:47 pandaJob.out
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user    988858 Dec  2 18:47 agis_schedconf.cvmfs.json
[2025-12-02 23:20:00] drwx------ 5 mf493845 unix-user       440 Dec  2 18:47 pilot3
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user 919854067 Dec  2 23:18 HITS.47533967._001987.pool.root.1
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user      1031 Dec  2 23:19 memory_monitor_summary.json
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user   1516240 Dec  2 23:19 agis_ddmendpoints.agis.ALL.json
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user   1569924 Dec  2 23:19 log.47533967._001987.job.log.tgz.1
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user      8585 Dec  2 23:19 heartbeat.json
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user        95 Dec  2 23:19 pilot_heartbeat.json
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user      4907 Dec  2 23:19 pilotlog.txt
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user   2354290 Dec  2 23:19 log.47533967._001987.job.log.1
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user       353 Dec  2 23:19 output.list
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user       620 Dec  2 23:19 runtime_log
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user   3942400 Dec  2 23:19 result.tar.gz
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user      9221 Dec  2 23:19 runtime_log.err
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user       651 Dec  2 23:19 gqVKDmadYg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcLHKDmSsVCwm.diag
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user     21655 Dec  2 23:19 stderr.txt
[2025-12-02 23:20:00] HITS file was successfully produced:
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user 919854067 Dec  2 23:18 shared/HITS.pool.root.1
[2025-12-02 23:20:00]  *** Contents of shared directory: ***
[2025-12-02 23:20:00] total 1302304
[2025-12-02 23:20:00] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:47 start_atlas.sh
[2025-12-02 23:20:00] -rw-r--r-- 2 mf493845 unix-user    590108 Dec  2 18:47 input.tar.gz
[2025-12-02 23:20:00] -rw-r--r-- 2 mf493845 unix-user 409149108 Dec  2 18:47 ATLAS.root_0
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user 919854067 Dec  2 23:18 HITS.pool.root.1
[2025-12-02 23:20:00] -rw------- 1 mf493845 unix-user   3942400 Dec  2 23:19 result.tar.gz
23:20:01 (32326): run_atlas exited; CPU time 122309.944729
23:20:01 (32326): called boinc_finish(0)

</stderr_txt>
]]>

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