Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:48:51 (25371): wrapper (7.7.26015): starting
18:48:51 (25371): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 18:48:51] Arguments: --nthreads 8
[2025-12-02 18:48:51] Threads: 8
[2025-12-02 18:48:51] Checking for CVMFS
[2025-12-02 18:48:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:48:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:48:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:48:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:48:51] 2.11.0.0 3958 74772 103924 153564 3 110 3412704 4096001 4478 130560 2 7546428 99.535 6622578 625 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 18:48:51] CVMFS is ok
[2025-12-02 18:48:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 18:48:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 18:48:51] Further information can be found at the LHC@home message board.
[2025-12-02 18:48:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:48:51] Checking for apptainer binary...
[2025-12-02 18:48:51] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 18:48:51] apptainer is not installed, using version from CVMFS
[2025-12-02 18:48:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:48:51] WARNING: Environment variable TMPDIR already has value [/tmp/job_10944821/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node100
[2025-12-02 18:48:51] apptainer works
[2025-12-02 18:48:51] Set ATHENA_PROC_NUMBER=8
[2025-12-02 18:48:51] Set ATHENA_CORE_NUMBER=8
[2025-12-02 18:48:51] Starting ATLAS job with PandaID=6898686581
[2025-12-02 18:48:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10944821/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 23:24:30]  *** The last 200 lines of the pilot log: ***
[2025-12-02 23:24:30] 2025-12-02 22:23:31,617 | INFO     | monitor loop #1200: job 0:6898686581 is in state 'finished'
[2025-12-02 23:24:30] 2025-12-02 22:23:31,618 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 23:24:30] 2025-12-02 22:23:32,115 | INFO     | time since job start (16476s) is within the limit (172800.0s)
[2025-12-02 23:24:30] 2025-12-02 22:23:32,875 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 23:24:30] 2025-12-02 22:23:32,879 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2490.157921875
[2025-12-02 23:24:30] 2025-12-02 22:23:32,884 | INFO     | using path: /tmp/job_10944821/atlas/pilot/slots/0/PanDA_Pilot-6898686581/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 23:24:30] 2025-12-02 22:23:32,884 | INFO     | extracted standard info from prmon json
[2025-12-02 23:24:30] 2025-12-02 22:23:32,884 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 23:24:30] 2025-12-02 22:23:32,885 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 23:24:30] 2025-12-02 22:23:32,887 | INFO     | fitting pss+swap vs Time
[2025-12-02 23:24:30] 2025-12-02 22:23:32,887 | INFO     | sum of square deviations: 6103286527.5
[2025-12-02 23:24:30] 2025-12-02 22:23:32,888 | INFO     | sum of deviations: 130426485984.49995
[2025-12-02 23:24:30] 2025-12-02 22:23:32,888 | INFO     | mean x: 1764705958.5
[2025-12-02 23:24:30] 2025-12-02 22:23:32,888 | INFO     | mean y: 2901352.855555556
[2025-12-02 23:24:30] 2025-12-02 22:23:32,888 | INFO     | intersect: -37708648961.2246
[2025-12-02 23:24:30] 2025-12-02 22:23:32,889 | INFO     | chi2: 2.720718764835212
[2025-12-02 23:24:30] 2025-12-02 22:23:32,889 | INFO     | sum of square deviations: 5770452380.0
[2025-12-02 23:24:30] 2025-12-02 22:23:32,890 | INFO     | sum of deviations: 170582069631.00006
[2025-12-02 23:24:30] 2025-12-02 22:23:32,890 | INFO     | mean x: 1764705806.0
[2025-12-02 23:24:30] 2025-12-02 22:23:32,890 | INFO     | mean y: 2919569.7698113206
[2025-12-02 23:24:30] 2025-12-02 22:23:32,890 | INFO     | intersect: -52164076855.096634
[2025-12-02 23:24:30] 2025-12-02 22:23:32,890 | INFO     | chi2: 1.4526829383233129
[2025-12-02 23:24:30] 2025-12-02 22:23:32,890 | INFO     | current chi2=1.4526829383233129 (change=46.60664832032727 %)
[2025-12-02 23:24:30] 2025-12-02 22:23:32,890 | INFO     | sum of square deviations: 5449944045.0
[2025-12-02 23:24:30] 2025-12-02 22:23:32,891 | INFO     | sum of deviations: 163731136573.0
[2025-12-02 23:24:30] 2025-12-02 22:23:32,891 | INFO     | mean x: 1764705653.5
[2025-12-02 23:24:30] 2025-12-02 22:23:32,891 | INFO     | mean y: 2916312.1923076925
[2025-12-02 23:24:30] 2025-12-02 22:23:32,891 | INFO     | intersect: -53013639450.32722
[2025-12-02 23:24:30] 2025-12-02 22:23:32,892 | INFO     | chi2: 1.4519434251095586
[2025-12-02 23:24:30] 2025-12-02 22:23:32,892 | INFO     | current chi2=1.4519434251095586 (change=0.05090671847552312 %)
[2025-12-02 23:24:30] 2025-12-02 22:23:32,892 | INFO     | right removable region: 259
[2025-12-02 23:24:30] 2025-12-02 22:23:32,892 | INFO     | sum of square deviations: 5770452380.0
[2025-12-02 23:24:30] 2025-12-02 22:23:32,893 | INFO     | sum of deviations: 79708733245.0
[2025-12-02 23:24:30] 2025-12-02 22:23:32,893 | INFO     | mean x: 1764706111.0
[2025-12-02 23:24:30] 2025-12-02 22:23:32,893 | INFO     | mean y: 2924417.686792453
[2025-12-02 23:24:30] 2025-12-02 22:23:32,893 | INFO     | intersect: -24373412027.796593
[2025-12-02 23:24:30] 2025-12-02 22:23:32,893 | INFO     | chi2: 1.3339301001330837
[2025-12-02 23:24:30] 2025-12-02 22:23:32,893 | INFO     | current chi2=1.3339301001330837 (change=50.97140809355659 %)
[2025-12-02 23:24:30] 2025-12-02 22:23:32,893 | INFO     | sum of square deviations: 5449944045.0
[2025-12-02 23:24:30] 2025-12-02 22:23:32,894 | INFO     | sum of deviations: 67367937223.50003
[2025-12-02 23:24:30] 2025-12-02 22:23:32,894 | INFO     | mean x: 1764706263.5
[2025-12-02 23:24:30] 2025-12-02 22:23:32,894 | INFO     | mean y: 2930283.726923077
[2025-12-02 23:24:30] 2025-12-02 22:23:32,894 | INFO     | intersect: -21810985564.905483
[2025-12-02 23:24:30] 2025-12-02 22:23:32,895 | INFO     | chi2: 1.314261723106276
[2025-12-02 23:24:30] 2025-12-02 22:23:32,895 | INFO     | current chi2=1.314261723106276 (change=1.4744683416953628 %)
[2025-12-02 23:24:30] 2025-12-02 22:23:32,895 | INFO     | left removable region: 20
[2025-12-02 23:24:30] 2025-12-02 22:23:32,895 | INFO     | sum of square deviations: 4233158440.0
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | sum of deviations: 82295852679.0
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | mean x: 1764706233.0
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | mean y: 2956661.8368200837
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | intersect: -34304288443.94312
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | chi2: 0.021627143785237318
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | current memory leak: 19.44 B/s (using 239 data points, chi2=0.02)
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | could have reported an average CPU frequency of 2973 MHz (12 samples)
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | ..............................
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | . Timing measurements:
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | . get job = 0 s
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | . initial setup = 1 s
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | . payload setup = 2 s
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | . stage-in = 0 s
[2025-12-02 23:24:30] 2025-12-02 22:23:32,896 | INFO     | . payload execution = 16451 s
[2025-12-02 23:24:30] 2025-12-02 22:23:32,897 | INFO     | . stage-out = 1 s
[2025-12-02 23:24:30] 2025-12-02 22:23:32,897 | INFO     | . log creation = 0 s
[2025-12-02 23:24:30] 2025-12-02 22:23:32,897 | INFO     | ..............................
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | 
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | job summary report
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | --------------------------------------------------
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | PanDA job id: 6898686581
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | task id: 47556185
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | errors: (none)
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | pilot state: finished 
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | transexitcode: 0
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | exeerrorcode: 0
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | exeerrordiag: 
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | exitcode: 0
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | exitmsg: OK
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | cpuconsumptiontime: 125047 s
[2025-12-02 23:24:30] 2025-12-02 22:23:33,115 | INFO     | nevents: 1000
[2025-12-02 23:24:30] 2025-12-02 22:23:33,116 | INFO     | neventsw: 0
[2025-12-02 23:24:30] 2025-12-02 22:23:33,116 | INFO     | pid: 6356
[2025-12-02 23:24:30] 2025-12-02 22:23:33,116 | INFO     | pgrp: 6356
[2025-12-02 23:24:30] 2025-12-02 22:23:33,116 | INFO     | corecount: 8
[2025-12-02 23:24:30] 2025-12-02 22:23:33,116 | INFO     | event service: False
[2025-12-02 23:24:30] 2025-12-02 22:23:33,116 | INFO     | sizes: {0: 2283486, 1: 2284468, 3: 2284730, 11: 2284758, 16457: 2317486, 16458: 2317485, 16459: 2326693, 16461: 2326749, 16463: 2326995}
[2025-12-02 23:24:30] 2025-12-02 22:23:33,116 | INFO     | --------------------------------------------------
[2025-12-02 23:24:30] 2025-12-02 22:23:33,116 | INFO     | 
[2025-12-02 23:24:30] 2025-12-02 22:23:33,116 | INFO     | executing command: ls -lF /tmp/job_10944821/atlas/pilot/slots/0
[2025-12-02 23:24:30] 2025-12-02 22:23:33,124 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | job 6898686581 has completed (purged errors)
[2025-12-02 23:24:30] 2025-12-02 22:23:33,125 | INFO     | overall cleanup function is called
[2025-12-02 23:24:30] 2025-12-02 22:23:34,133 | INFO     | --- collectZombieJob: --- 10, [6356]
[2025-12-02 23:24:30] 2025-12-02 22:23:34,133 | INFO     | zombie collector waiting for pid 6356
[2025-12-02 23:24:30] 2025-12-02 22:23:34,133 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 23:24:30] 2025-12-02 22:23:34,133 | INFO     | collected zombie processes
[2025-12-02 23:24:30] 2025-12-02 22:23:34,133 | INFO     | will attempt to kill all subprocesses of pid=6356
[2025-12-02 23:24:30] 2025-12-02 22:23:34,229 | INFO     | process IDs to be killed: [6356] (in reverse order)
[2025-12-02 23:24:30] 2025-12-02 22:23:34,263 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 23:24:30] 2025-12-02 22:23:34,264 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 23:24:30] 2025-12-02 22:23:34,267 | INFO     | did not find any defunct processes belonging to 6356
[2025-12-02 23:24:30] 2025-12-02 22:23:34,270 | INFO     | did not find any defunct processes belonging to 6356
[2025-12-02 23:24:30] 2025-12-02 22:23:34,270 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 23:24:30] 2025-12-02 22:23:34,270 | INFO     | ready for new job
[2025-12-02 23:24:30] 2025-12-02 22:23:34,271 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 23:24:30] 2025-12-02 22:23:34,272 | INFO     | ***************************************
[2025-12-02 23:24:30] 2025-12-02 22:23:34,272 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 23:24:30] 2025-12-02 22:23:34,272 | INFO     | ***************************************
[2025-12-02 23:24:30] 2025-12-02 22:23:34,272 | INFO     | 
[2025-12-02 23:24:30] 2025-12-02 22:23:34,286 | INFO     | architecture information:
[2025-12-02 23:24:30] 2025-12-02 22:23:34,286 | INFO     | executing command: cat /etc/os-release
[2025-12-02 23:24:30] 2025-12-02 22:23:34,292 | INFO     | cat /etc/os-release:
[2025-12-02 23:24:30] NAME="CentOS Linux"
[2025-12-02 23:24:30] VERSION="7 (Core)"
[2025-12-02 23:24:30] ID="centos"
[2025-12-02 23:24:30] ID_LIKE="rhel fedora"
[2025-12-02 23:24:30] VERSION_ID="7"
[2025-12-02 23:24:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 23:24:30] ANSI_COLOR="0;31"
[2025-12-02 23:24:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 23:24:30] HOME_URL="https://www.centos.org/"
[2025-12-02 23:24:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 23:24:30] 
[2025-12-02 23:24:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 23:24:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 23:24:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 23:24:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 23:24:30] 
[2025-12-02 23:24:30] 2025-12-02 22:23:34,292 | INFO     | ***************************************
[2025-12-02 23:24:30] 2025-12-02 22:23:34,795 | INFO     | executing command: df -mP /tmp/job_10944821/atlas/pilot/slots/0
[2025-12-02 23:24:30] 2025-12-02 22:23:34,801 | INFO     | sufficient remaining disk space (223733612544 B)
[2025-12-02 23:24:30] 2025-12-02 22:23:34,801 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 23:24:30] 2025-12-02 22:23:34,801 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 23:24:30] 2025-12-02 22:23:34,801 | INFO     | update_server=False
[2025-12-02 23:24:30] 2025-12-02 22:23:34,801 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 23:24:30] 2025-12-02 22:23:34,801 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 23:24:30] 2025-12-02 22:23:34,801 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:24:30] 2025-12-02 22:23:34,857 | INFO     | all job control threads have been joined
[2025-12-02 23:24:30] 2025-12-02 22:23:35,125 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:24:30] 2025-12-02 22:23:35,126 | INFO     | aborting loop
[2025-12-02 23:24:30] 2025-12-02 22:23:35,564 | INFO     | all payload control threads have been joined
[2025-12-02 23:24:30] 2025-12-02 22:23:35,706 | INFO     | all data control threads have been joined
[2025-12-02 23:24:30] 2025-12-02 22:23:35,806 | INFO     | [job] retrieve thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:35,806 | INFO     | [job] queue monitor thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:35,824 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:35,862 | INFO     | [job] control thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:35,889 | INFO     | [data] copytool_in thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:36,131 | INFO     | [job] job monitor thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:36,246 | INFO     | [payload] failed_post thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:36,494 | INFO     | [payload] validate_post thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:36,569 | INFO     | [payload] control thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:36,711 | INFO     | [data] control thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:36,720 | INFO     | [job] validate thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:36,806 | INFO     | [data] copytool_out thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:36,846 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 23:24:30] 2025-12-02 22:23:36,878 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:37,018 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:37,247 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:23:40,852 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 23:24:30] 2025-12-02 22:24:05,305 | INFO     | PID=30165 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 23:24:30] 2025-12-02 22:24:05,305 | INFO     | .. there are 2 such processes running
[2025-12-02 23:24:30] 2025-12-02 22:24:05,306 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 23:24:30] 2025-12-02 22:24:05,306 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 23:24:30] 2025-12-02 22:24:05,306 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 23:24:30] 2025-12-02 22:24:24,099 | INFO     | [monitor] cgroup control has ended
[2025-12-02 23:24:30] 2025-12-02 22:24:25,792 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-02 23:24:30] 2025-12-02 22:24:26,411 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 23:24:30] 2025-12-02 22:24:26,411 | INFO     | [monitor] control thread has ended
[2025-12-02 23:24:30] 2025-12-02 22:24:30,817 | INFO     | all workflow threads have been joined
[2025-12-02 23:24:30] 2025-12-02 22:24:30,817 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 23:24:30] 2025-12-02 22:24:30,818 | INFO     | traces error code: 0
[2025-12-02 23:24:30] 2025-12-02 22:24:30,818 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 23:24:30] 2025-12-02 22:24:30,872 [wrapper] ==== pilot stdout END ====
[2025-12-02 23:24:30] 2025-12-02 22:24:30,873 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 23:24:30] 2025-12-02 22:24:30,874 [wrapper] pilotpid: 30165
[2025-12-02 23:24:30] 2025-12-02 22:24:30,876 [wrapper] Pilot exit status: 0
[2025-12-02 23:24:30] 2025-12-02 22:24:30,880 [wrapper] pandaids: 6898686581
[2025-12-02 23:24:30] 2025-12-02 22:24:30,903 [wrapper] cleanup supervisor_pilot  8423 30166
[2025-12-02 23:24:30] 2025-12-02 22:24:30,904 [wrapper] Test setup, not cleaning
[2025-12-02 23:24:30] 2025-12-02 22:24:30,905 [wrapper] apfmon messages muted
[2025-12-02 23:24:30] 2025-12-02 22:24:30,906 [wrapper] ==== wrapper stdout END ====
[2025-12-02 23:24:30] 2025-12-02 22:24:30,907 [wrapper] ==== wrapper stderr END ====
[2025-12-02 23:24:30]  *** Error codes and diagnostics ***
[2025-12-02 23:24:30]     "exeErrorCode": 0,
[2025-12-02 23:24:30]     "exeErrorDiag": "",
[2025-12-02 23:24:30]     "pilotErrorCode": 0,
[2025-12-02 23:24:30]     "pilotErrorDiag": "",
[2025-12-02 23:24:30]  *** Listing of results directory ***
[2025-12-02 23:24:30] total 1341088
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user    576529 Nov 26 17:12 pilot3.tar.gz
[2025-12-02 23:24:30] -rwx------ 1 mf493845 unix-user     36292 Nov 26 17:39 runpilot2-wrapper.sh
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user      5112 Nov 26 17:41 queuedata.json
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user       100 Dec  2 17:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 23:24:30] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 17:04 run_atlas
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user       105 Dec  2 17:04 job.xml
[2025-12-02 23:24:30] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:48 start_atlas.sh
[2025-12-02 23:24:30] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 18:48 shared
[2025-12-02 23:24:30] -rw-r--r-- 2 mf493845 unix-user    590111 Dec  2 18:48 input.tar.gz
[2025-12-02 23:24:30] -rw-r--r-- 2 mf493845 unix-user 411466306 Dec  2 18:48 EVNT.47483658._004299.pool.root.1
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user         0 Dec  2 18:48 boinc_setup_complete
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user      6392 Dec  2 18:48 init_data.xml
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user      8192 Dec  2 18:48 boinc_mmap_file
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user         0 Dec  2 18:48 boinc_lockfile
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user      2786 Dec  2 18:48 pandaJob.out
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user    988858 Dec  2 18:48 agis_schedconf.cvmfs.json
[2025-12-02 23:24:30] drwx------ 5 mf493845 unix-user       440 Dec  2 18:48 pilot3
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user 950052983 Dec  2 23:23 HITS.47556185._000625.pool.root.1
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user      1032 Dec  2 23:23 memory_monitor_summary.json
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user   1516240 Dec  2 23:23 agis_ddmendpoints.agis.ALL.json
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user   1566259 Dec  2 23:23 log.47556185._000625.job.log.tgz.1
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user      8586 Dec  2 23:23 heartbeat.json
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user        95 Dec  2 23:24 pilot_heartbeat.json
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user      4835 Dec  2 23:24 pilotlog.txt
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user   2371023 Dec  2 23:24 log.47556185._000625.job.log.1
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user       353 Dec  2 23:24 output.list
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user       620 Dec  2 23:24 runtime_log
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user   3952640 Dec  2 23:24 result.tar.gz
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user       649 Dec  2 23:24 YwqNDm6iXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfEKKDmypj5So.diag
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user      9221 Dec  2 23:24 runtime_log.err
[2025-12-02 23:24:30] -rw------- 1 mf493845 unix-user     21728 Dec  2 23:24 stderr.txt
[2025-12-02 23:24:31] HITS file was successfully produced:
[2025-12-02 23:24:31] -rw------- 1 mf493845 unix-user 950052983 Dec  2 23:23 shared/HITS.pool.root.1
[2025-12-02 23:24:31]  *** Contents of shared directory: ***
[2025-12-02 23:24:31] total 1334068
[2025-12-02 23:24:31] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:48 start_atlas.sh
[2025-12-02 23:24:31] -rw-r--r-- 2 mf493845 unix-user    590111 Dec  2 18:48 input.tar.gz
[2025-12-02 23:24:31] -rw-r--r-- 2 mf493845 unix-user 411466306 Dec  2 18:48 ATLAS.root_0
[2025-12-02 23:24:31] -rw------- 1 mf493845 unix-user 950052983 Dec  2 23:23 HITS.pool.root.1
[2025-12-02 23:24:31] -rw------- 1 mf493845 unix-user   3952640 Dec  2 23:24 result.tar.gz
23:24:32 (25371): run_atlas exited; CPU time 125249.789208
23:24:32 (25371): called boinc_finish(0)

</stderr_txt>
]]>

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