Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:12:55 (258609): wrapper (7.7.26015): starting
08:12:55 (258609): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 08:12:55] Arguments: --nthreads 8
[2025-12-02 08:12:55] Threads: 8
[2025-12-02 08:12:55] Checking for CVMFS
[2025-12-02 08:12:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 08:12:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 08:12:56] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 08:12:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 08:12:57] 2.13.3.0 7385 38671 390224 153556 0 986 30848396 32503809 45110 16776704 0 563286037 99.657 503367367 46976 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 08:12:57] CVMFS is ok
[2025-12-02 08:12:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 08:12:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 08:12:57] Further information can be found at the LHC@home message board.
[2025-12-02 08:12:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 08:12:57] Checking for apptainer binary...
[2025-12-02 08:12:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 08:12:57] Running /usr/bin/apptainer --version
[2025-12-02 08:12:57] apptainer version 1.4.4-1.el9
[2025-12-02 08:12:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 08:12:58] c8-7-1.aglt2.org
[2025-12-02 08:12:58] apptainer works
[2025-12-02 08:12:58] Set ATHENA_PROC_NUMBER=8
[2025-12-02 08:12:58] Set ATHENA_CORE_NUMBER=8
[2025-12-02 08:12:58] Starting ATLAS job with PandaID=6898489583
[2025-12-02 08:12:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 23:31:41]  *** The last 200 lines of the pilot log: ***
[2025-12-02 23:31:42] 2025-12-03 04:30:06,314 | INFO     | time since job start (54930s) is within the limit (172800.0s)
[2025-12-02 23:31:42] 2025-12-03 04:30:06,891 | INFO     | monitor loop #3062: job 0:6898489583 is in state 'finished'
[2025-12-02 23:31:42] 2025-12-03 04:30:06,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 23:31:42] 2025-12-03 04:30:08,327 | INFO     | time since job start (54932s) is within the limit (172800.0s)
[2025-12-02 23:31:42] 2025-12-03 04:30:09,396 | INFO     | monitor loop #3063: job 0:6898489583 is in state 'finished'
[2025-12-02 23:31:42] 2025-12-03 04:30:09,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 23:31:42] 2025-12-03 04:30:10,334 | INFO     | time since job start (54934s) is within the limit (172800.0s)
[2025-12-02 23:31:42] 2025-12-03 04:30:11,915 | INFO     | monitor loop #3064: job 0:6898489583 is in state 'finished'
[2025-12-02 23:31:42] 2025-12-03 04:30:11,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 23:31:42] 2025-12-03 04:30:13,552 | INFO     | PID=298299 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 23:31:42] 2025-12-03 04:30:13,553 | INFO     | .. there are 53 such processes running
[2025-12-02 23:31:42] 2025-12-03 04:30:14,447 | INFO     | monitor loop #3065: job 0:6898489583 is in state 'finished'
[2025-12-02 23:31:42] 2025-12-03 04:30:14,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 23:31:42] 2025-12-03 04:30:14,554 | INFO     | time since job start (54938s) is within the limit (172800.0s)
[2025-12-02 23:31:42] 2025-12-03 04:30:15,990 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 23:31:42] 2025-12-03 04:30:16,032 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3746.391671875001
[2025-12-02 23:31:42] 2025-12-03 04:30:16,121 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6898489583/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 23:31:42] 2025-12-03 04:30:16,122 | INFO     | extracted standard info from prmon json
[2025-12-02 23:31:42] 2025-12-03 04:30:16,122 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 23:31:42] 2025-12-03 04:30:16,122 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 23:31:42] 2025-12-03 04:30:16,165 | INFO     | fitting pss+swap vs Time
[2025-12-02 23:31:42] 2025-12-03 04:30:16,166 | INFO     | sum of square deviations: 224532385929.3908
[2025-12-02 23:31:42] 2025-12-03 04:30:16,216 | INFO     | sum of deviations: 272224006843.02875
[2025-12-02 23:31:42] 2025-12-03 04:30:16,217 | INFO     | mean x: 1764708790.3541203
[2025-12-02 23:31:42] 2025-12-03 04:30:16,217 | INFO     | mean y: 2782042.2483296213
[2025-12-02 23:31:42] 2025-12-03 04:30:16,217 | INFO     | intersect: -2136758299.9292316
[2025-12-02 23:31:42] 2025-12-03 04:30:16,217 | INFO     | chi2: 30.259723048665492
[2025-12-02 23:31:42] 2025-12-03 04:30:16,218 | INFO     | sum of square deviations: 220802954034.60468
[2025-12-02 23:31:42] 2025-12-03 04:30:16,265 | INFO     | sum of deviations: 561549310173.2191
[2025-12-02 23:31:42] 2025-12-03 04:30:16,265 | INFO     | mean x: 1764708637.8645017
[2025-12-02 23:31:42] 2025-12-03 04:30:16,265 | INFO     | mean y: 2793869.836506159
[2025-12-02 23:31:42] 2025-12-03 04:30:16,265 | INFO     | intersect: -4485239012.614084
[2025-12-02 23:31:42] 2025-12-03 04:30:16,276 | INFO     | chi2: 26.742058346498343
[2025-12-02 23:31:42] 2025-12-03 04:30:16,276 | INFO     | current chi2=26.742058346498343 (change=11.62490712988295 %)
[2025-12-02 23:31:42] 2025-12-03 04:30:16,276 | INFO     | right removable region: 892
[2025-12-02 23:31:42] 2025-12-03 04:30:16,277 | INFO     | sum of square deviations: 220801938384.6048
[2025-12-02 23:31:42] 2025-12-03 04:30:16,353 | INFO     | sum of deviations: -71864404059.04291
[2025-12-02 23:31:42] 2025-12-03 04:30:16,353 | INFO     | mean x: 1764708942.8645017
[2025-12-02 23:31:42] 2025-12-03 04:30:16,353 | INFO     | mean y: 2796105.288913774
[2025-12-02 23:31:42] 2025-12-03 04:30:16,353 | INFO     | intersect: 577155902.3289175
[2025-12-02 23:31:42] 2025-12-03 04:30:16,354 | INFO     | chi2: 26.327702173285925
[2025-12-02 23:31:42] 2025-12-03 04:30:16,354 | INFO     | current chi2=26.327702173285925 (change=12.994239468272253 %)
[2025-12-02 23:31:42] 2025-12-03 04:30:16,354 | INFO     | left removable region: 10
[2025-12-02 23:31:42] 2025-12-03 04:30:16,354 | INFO     | sum of square deviations: 212742050649.38797
[2025-12-02 23:31:42] 2025-12-03 04:30:16,425 | INFO     | sum of deviations: -12816735525.879044
[2025-12-02 23:31:42] 2025-12-03 04:30:16,426 | INFO     | mean x: 1764708912.3877552
[2025-12-02 23:31:42] 2025-12-03 04:30:16,426 | INFO     | mean y: 2822373.844671202
[2025-12-02 23:31:42] 2025-12-03 04:30:16,426 | INFO     | intersect: 109138014.50525247
[2025-12-02 23:31:42] 2025-12-03 04:30:16,426 | INFO     | chi2: 19.448846599393875
[2025-12-02 23:31:42] 2025-12-03 04:30:16,427 | INFO     | current memory leak: -0.06 B/s (using 882 data points, chi2=19.45)
[2025-12-02 23:31:42] 2025-12-03 04:30:16,427 | INFO     | could have reported an average CPU frequency of 3770 MHz (33 samples)
[2025-12-02 23:31:42] 2025-12-03 04:30:16,428 | INFO     | ..............................
[2025-12-02 23:31:42] 2025-12-03 04:30:16,428 | INFO     | . Timing measurements:
[2025-12-02 23:31:42] 2025-12-03 04:30:16,428 | INFO     | . get job = 0 s
[2025-12-02 23:31:42] 2025-12-03 04:30:16,428 | INFO     | . initial setup = 4 s
[2025-12-02 23:31:42] 2025-12-03 04:30:16,428 | INFO     | . payload setup = 47 s
[2025-12-02 23:31:42] 2025-12-03 04:30:16,428 | INFO     | . stage-in = 0 s
[2025-12-02 23:31:42] 2025-12-03 04:30:16,428 | INFO     | . payload execution = 54776 s
[2025-12-02 23:31:42] 2025-12-03 04:30:16,428 | INFO     | . stage-out = 6 s
[2025-12-02 23:31:42] 2025-12-03 04:30:16,428 | INFO     | . log creation = 3 s
[2025-12-02 23:31:42] 2025-12-03 04:30:16,428 | INFO     | ..............................
[2025-12-02 23:31:42] 2025-12-03 04:30:16,593 | INFO     | time since job start (54940s) is within the limit (172800.0s)
[2025-12-02 23:31:42] 2025-12-03 04:30:16,748 | INFO     | 
[2025-12-02 23:31:42] 2025-12-03 04:30:16,748 | INFO     | job summary report
[2025-12-02 23:31:42] 2025-12-03 04:30:16,748 | INFO     | --------------------------------------------------
[2025-12-02 23:31:42] 2025-12-03 04:30:16,748 | INFO     | PanDA job id: 6898489583
[2025-12-02 23:31:42] 2025-12-03 04:30:16,748 | INFO     | task id: 47556173
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | errors: (none)
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | pilot state: finished 
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | transexitcode: 0
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | exeerrorcode: 0
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | exeerrordiag: 
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | exitcode: 0
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | exitmsg: OK
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | cpuconsumptiontime: 140394 s
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | nevents: 1000
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | neventsw: 0
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | pid: 343810
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | pgrp: 343810
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | corecount: 8
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | event service: False
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | sizes: {0: 2284145, 1: 2284344, 12: 2284344, 23: 2284372, 33: 2284662, 34: 2284718, 54825: 2334222, 54833: 2343216, 54836: 2343272, 54874: 2343582}
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | --------------------------------------------------
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | 
[2025-12-02 23:31:42] 2025-12-03 04:30:16,749 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-02 23:31:42] 2025-12-03 04:30:17,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,077 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,077 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,077 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,077 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,077 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | job 6898489583 has completed (purged errors)
[2025-12-02 23:31:42] 2025-12-03 04:30:17,078 | INFO     | overall cleanup function is called
[2025-12-02 23:31:42] 2025-12-03 04:30:18,134 | INFO     | --- collectZombieJob: --- 10, [343810]
[2025-12-02 23:31:42] 2025-12-03 04:30:18,134 | INFO     | zombie collector waiting for pid 343810
[2025-12-02 23:31:42] 2025-12-03 04:30:18,134 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 23:31:42] 2025-12-03 04:30:18,134 | INFO     | collected zombie processes
[2025-12-02 23:31:42] 2025-12-03 04:30:18,134 | INFO     | will attempt to kill all subprocesses of pid=343810
[2025-12-02 23:31:42] 2025-12-03 04:30:20,010 | INFO     | process IDs to be killed: [343810] (in reverse order)
[2025-12-02 23:31:42] 2025-12-03 04:30:20,722 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 23:31:42] 2025-12-03 04:30:20,722 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 23:31:42] 2025-12-03 04:30:20,863 | INFO     | did not find any defunct processes belonging to 343810
[2025-12-02 23:31:42] 2025-12-03 04:30:20,996 | INFO     | did not find any defunct processes belonging to 343810
[2025-12-02 23:31:42] 2025-12-03 04:30:21,014 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 23:31:42] 2025-12-03 04:30:21,014 | INFO     | ready for new job
[2025-12-02 23:31:42] 2025-12-03 04:30:21,014 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 23:31:42] 2025-12-03 04:30:21,027 | INFO     | ***************************************
[2025-12-02 23:31:42] 2025-12-03 04:30:21,027 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 23:31:42] 2025-12-03 04:30:21,027 | INFO     | ***************************************
[2025-12-02 23:31:42] 2025-12-03 04:30:21,027 | INFO     | 
[2025-12-02 23:31:42] 2025-12-03 04:30:21,045 | INFO     | architecture information:
[2025-12-02 23:31:42] 2025-12-03 04:30:21,062 | INFO     | executing command: cat /etc/os-release
[2025-12-02 23:31:42] 2025-12-03 04:30:21,187 | INFO     | cat /etc/os-release:
[2025-12-02 23:31:42] NAME="CentOS Linux"
[2025-12-02 23:31:42] VERSION="7 (Core)"
[2025-12-02 23:31:42] ID="centos"
[2025-12-02 23:31:42] ID_LIKE="rhel fedora"
[2025-12-02 23:31:42] VERSION_ID="7"
[2025-12-02 23:31:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 23:31:42] ANSI_COLOR="0;31"
[2025-12-02 23:31:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 23:31:42] HOME_URL="https://www.centos.org/"
[2025-12-02 23:31:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 23:31:42] 
[2025-12-02 23:31:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 23:31:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 23:31:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 23:31:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 23:31:42] 
[2025-12-02 23:31:42] 2025-12-03 04:30:21,187 | INFO     | ***************************************
[2025-12-02 23:31:42] 2025-12-03 04:30:21,691 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-02 23:31:42] 2025-12-03 04:30:21,740 | INFO     | sufficient remaining disk space (85228257280 B)
[2025-12-02 23:31:42] 2025-12-03 04:30:21,740 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 23:31:42] 2025-12-03 04:30:21,741 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 23:31:42] 2025-12-03 04:30:21,741 | INFO     | update_server=False
[2025-12-02 23:31:42] 2025-12-03 04:30:21,741 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 23:31:42] 2025-12-03 04:30:21,742 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 23:31:42] 2025-12-03 04:30:21,776 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:31:42] 2025-12-03 04:30:21,862 | INFO     | all data control threads have been joined
[2025-12-02 23:31:42] 2025-12-03 04:30:21,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 23:31:42] 2025-12-03 04:30:21,930 | INFO     | all payload control threads have been joined
[2025-12-02 23:31:42] 2025-12-03 04:30:22,012 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 23:31:42] 2025-12-03 04:30:22,012 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 23:31:42] 2025-12-03 04:30:22,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:31:42] 2025-12-03 04:30:22,012 | INFO     | will abort loop
[2025-12-02 23:31:42] 2025-12-03 04:30:22,746 | INFO     | [job] retrieve thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:22,782 | INFO     | [job] queue monitor thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:22,895 | INFO     | [data] control thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:22,935 | INFO     | [job] validate thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:22,936 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:22,936 | INFO     | [payload] control thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:23,018 | INFO     | [job] job monitor thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:23,018 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:23,022 | INFO     | all job control threads have been joined
[2025-12-02 23:31:42] 2025-12-03 04:30:23,440 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:23,519 | INFO     | [data] copytool_in thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:23,572 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:23,941 | INFO     | [data] copytool_out thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:24,028 | INFO     | [job] control thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:24,263 | INFO     | [payload] validate_post thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:24,263 | INFO     | [payload] failed_post thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:25,753 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 23:31:42] 2025-12-03 04:30:52,624 | INFO     | PID=298299 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 23:31:42] 2025-12-03 04:30:52,648 | INFO     | .. there are 54 such processes running
[2025-12-02 23:31:42] 2025-12-03 04:30:52,648 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 23:31:42] 2025-12-03 04:30:52,648 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 23:31:42] 2025-12-03 04:30:52,648 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 23:31:42] 2025-12-03 04:31:13,218 | INFO     | [monitor] cgroup control has ended
[2025-12-02 23:31:42] 2025-12-03 04:31:15,137 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140213691934528)>', '<ExcThread(monitor, started 140213208729344)>']
[2025-12-02 23:31:42] 2025-12-03 04:31:15,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 23:31:42] 2025-12-03 04:31:15,819 | INFO     | [monitor] control thread has ended
[2025-12-02 23:31:42] 2025-12-03 04:31:20,163 | INFO     | all workflow threads have been joined
[2025-12-02 23:31:42] 2025-12-03 04:31:20,163 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 23:31:42] 2025-12-03 04:31:20,163 | INFO     | traces error code: 0
[2025-12-02 23:31:42] 2025-12-03 04:31:20,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 23:31:42] 2025-12-03 04:31:20,721 [wrapper] ==== pilot stdout END ====
[2025-12-02 23:31:42] 2025-12-03 04:31:20,745 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 23:31:42] 2025-12-03 04:31:20,766 [wrapper] pilotpid: 298299
[2025-12-02 23:31:42] 2025-12-03 04:31:20,832 [wrapper] Pilot exit status: 0
[2025-12-02 23:31:42] 2025-12-03 04:31:21,003 [wrapper] pandaids: 6898489583
[2025-12-02 23:31:42] 2025-12-03 04:31:21,437 [wrapper] cleanup supervisor_pilot  670108 298300
[2025-12-02 23:31:42] 2025-12-03 04:31:21,474 [wrapper] Test setup, not cleaning
[2025-12-02 23:31:42] 2025-12-03 04:31:21,554 [wrapper] apfmon messages muted
[2025-12-02 23:31:42] 2025-12-03 04:31:21,566 [wrapper] ==== wrapper stdout END ====
[2025-12-02 23:31:42] 2025-12-03 04:31:21,592 [wrapper] ==== wrapper stderr END ====
[2025-12-02 23:31:42]  *** Error codes and diagnostics ***
[2025-12-02 23:31:42]     "exeErrorCode": 0,
[2025-12-02 23:31:42]     "exeErrorDiag": "",
[2025-12-02 23:31:42]     "pilotErrorCode": 0,
[2025-12-02 23:31:42]     "pilotErrorDiag": "",
[2025-12-02 23:31:42]  *** Listing of results directory ***
[2025-12-02 23:31:42] total 1322708
[2025-12-02 23:31:42] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-12-02 23:31:42] -rwx------. 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-12-02 23:31:42] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-12-02 23:31:42] -rw-r--r--. 1 boincer umatlas       100 Dec  2 08:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 23:31:42] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 08:12 run_atlas
[2025-12-02 23:31:42] -rw-r--r--. 1 boincer umatlas       105 Dec  2 08:12 job.xml
[2025-12-02 23:31:42] -rw-r--r--. 2 boincer umatlas 411490998 Dec  2 08:12 EVNT.47483658._003218.pool.root.1
[2025-12-02 23:31:42] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 08:12 shared
[2025-12-02 23:31:42] -rw-r--r--. 2 boincer umatlas    590103 Dec  2 08:12 input.tar.gz
[2025-12-02 23:31:42] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 08:12 start_atlas.sh
[2025-12-02 23:31:42] -rw-r--r--. 1 boincer umatlas         0 Dec  2 08:12 boinc_lockfile
[2025-12-02 23:31:42] -rw-r--r--. 1 boincer umatlas      2787 Dec  2 08:12 pandaJob.out
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas        57 Dec  2 08:12 setup.sh.local
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas    987484 Dec  2 08:14 agis_schedconf.cvmfs.json
[2025-12-02 23:31:42] drwx------. 5 boincer umatlas      4096 Dec  2 08:14 pilot3
[2025-12-02 23:31:42] -rw-r--r--. 1 boincer umatlas       532 Dec  2 22:56 boinc_task_state.xml
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas 921733976 Dec  2 23:28 HITS.47556173._001750.pool.root.1
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas      1076 Dec  2 23:29 memory_monitor_summary.json
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas   1516240 Dec  2 23:29 agis_ddmendpoints.agis.ALL.json
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas   2037852 Dec  2 23:29 log.47556173._001750.job.log.tgz.1
[2025-12-02 23:31:42] -rw-r--r--. 1 boincer umatlas      7172 Dec  2 23:29 init_data.xml
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas        95 Dec  2 23:30 pilot_heartbeat.json
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas      8634 Dec  2 23:30 heartbeat.json
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas      5009 Dec  2 23:31 pilotlog.txt
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas   6616756 Dec  2 23:31 log.47556173._001750.job.log.1
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas       353 Dec  2 23:31 output.list
[2025-12-02 23:31:42] -rw-r--r--. 1 boincer umatlas       620 Dec  2 23:31 runtime_log
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas   8673280 Dec  2 23:31 result.tar.gz
[2025-12-02 23:31:42] -rw-r--r--. 1 boincer umatlas      9333 Dec  2 23:31 runtime_log.err
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas       664 Dec  2 23:31 n3PKDmRgXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtFNKDmmFjWln.diag
[2025-12-02 23:31:42] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 23:31 boinc_mmap_file
[2025-12-02 23:31:42] -rw-r--r--. 1 boincer umatlas        29 Dec  2 23:31 wrapper_checkpoint.txt
[2025-12-02 23:31:42] -rw-r--r--. 1 boincer umatlas     21842 Dec  2 23:31 stderr.txt
[2025-12-02 23:31:42] HITS file was successfully produced:
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas 921733976 Dec  2 23:28 shared/HITS.pool.root.1
[2025-12-02 23:31:42]  *** Contents of shared directory: ***
[2025-12-02 23:31:42] total 1311056
[2025-12-02 23:31:42] -rw-r--r--. 2 boincer umatlas 411490998 Dec  2 08:12 ATLAS.root_0
[2025-12-02 23:31:42] -rw-r--r--. 2 boincer umatlas    590103 Dec  2 08:12 input.tar.gz
[2025-12-02 23:31:42] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 08:12 start_atlas.sh
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas 921733976 Dec  2 23:28 HITS.pool.root.1
[2025-12-02 23:31:42] -rw-------. 1 boincer umatlas   8673280 Dec  2 23:31 result.tar.gz
23:31:43 (258609): run_atlas exited; CPU time 141673.061398
23:31:43 (258609): called boinc_finish(0)

</stderr_txt>
]]>

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