Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:09:22 (6478): wrapper (7.7.26015): starting
18:09:22 (6478): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 18:09:22] Arguments: --nthreads 8
[2025-12-02 18:09:22] Threads: 8
[2025-12-02 18:09:22] Checking for CVMFS
[2025-12-02 18:09:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:09:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:09:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:09:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:09:22] 2.11.0.0 7813 74587 77048 153562 2 1 3108775 4096000 0 130560 1 2675245 99.262 3771705 403 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 18:09:22] CVMFS is ok
[2025-12-02 18:09:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 18:09:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 18:09:22] Further information can be found at the LHC@home message board.
[2025-12-02 18:09:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:09:22] Checking for apptainer binary...
[2025-12-02 18:09:22] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 18:09:22] apptainer is not installed, using version from CVMFS
[2025-12-02 18:09:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:09:32] WARNING: Environment variable TMPDIR already has value [/tmp/job_10944597/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node095
[2025-12-02 18:09:32] apptainer works
[2025-12-02 18:09:32] Set ATHENA_PROC_NUMBER=8
[2025-12-02 18:09:32] Set ATHENA_CORE_NUMBER=8
[2025-12-02 18:09:32] Starting ATLAS job with PandaID=6898686865
[2025-12-02 18:09:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10944597/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 22:47:26]  *** The last 200 lines of the pilot log: ***
[2025-12-02 22:47:26] 2025-12-02 21:46:29,134 | INFO     | extracted standard info from prmon json
[2025-12-02 22:47:26] 2025-12-02 21:46:29,134 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 22:47:26] 2025-12-02 21:46:29,134 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 22:47:26] 2025-12-02 21:46:29,136 | INFO     | fitting pss+swap vs Time
[2025-12-02 22:47:26] 2025-12-02 21:46:29,137 | INFO     | sum of square deviations: 6239923508.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,138 | INFO     | sum of deviations: 2082184042552.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,138 | INFO     | mean x: 1764703680.5
[2025-12-02 22:47:26] 2025-12-02 21:46:29,138 | INFO     | mean y: 5369853.852941177
[2025-12-02 22:47:26] 2025-12-02 21:46:29,138 | INFO     | intersect: -588854067070.1747
[2025-12-02 22:47:26] 2025-12-02 21:46:29,138 | INFO     | chi2: 8.879662352917702
[2025-12-02 22:47:26] 2025-12-02 21:46:29,138 | INFO     | sum of square deviations: 5902093918.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,139 | INFO     | sum of deviations: 2206913609735.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,139 | INFO     | mean x: 1764703528.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,139 | INFO     | mean y: 5425849.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,139 | INFO     | intersect: -659853310253.6418
[2025-12-02 22:47:26] 2025-12-02 21:46:29,139 | INFO     | chi2: 5.127740786376963
[2025-12-02 22:47:26] 2025-12-02 21:46:29,139 | INFO     | current chi2=5.127740786376963 (change=42.252975590991056 %)
[2025-12-02 22:47:26] 2025-12-02 21:46:29,140 | INFO     | sum of square deviations: 5576683165.5
[2025-12-02 22:47:26] 2025-12-02 21:46:29,141 | INFO     | sum of deviations: 2134018767786.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,141 | INFO     | mean x: 1764703375.5
[2025-12-02 22:47:26] 2025-12-02 21:46:29,141 | INFO     | mean y: 5391683.862595419
[2025-12-02 22:47:26] 2025-12-02 21:46:29,141 | INFO     | intersect: -675290301316.9531
[2025-12-02 22:47:26] 2025-12-02 21:46:29,141 | INFO     | chi2: 4.876967254780781
[2025-12-02 22:47:26] 2025-12-02 21:46:29,141 | INFO     | current chi2=4.876967254780781 (change=4.890526686965537 %)
[2025-12-02 22:47:26] 2025-12-02 21:46:29,141 | INFO     | right removable region: 261
[2025-12-02 22:47:26] 2025-12-02 21:46:29,141 | INFO     | sum of square deviations: 5902093918.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,142 | INFO     | sum of deviations: 1887043347972.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,142 | INFO     | mean x: 1764703833.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,142 | INFO     | mean y: 5457853.70411985
[2025-12-02 22:47:26] 2025-12-02 21:46:29,142 | INFO     | intersect: -564213389807.6998
[2025-12-02 22:47:26] 2025-12-02 21:46:29,142 | INFO     | chi2: 6.287922748027735
[2025-12-02 22:47:26] 2025-12-02 21:46:29,142 | INFO     | current chi2=6.287922748027735 (change=29.187366612406905 %)
[2025-12-02 22:47:26] 2025-12-02 21:46:29,143 | INFO     | sum of square deviations: 5576683165.5
[2025-12-02 22:47:26] 2025-12-02 21:46:29,144 | INFO     | sum of deviations: 1758889852619.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,144 | INFO     | mean x: 1764703985.5
[2025-12-02 22:47:26] 2025-12-02 21:46:29,144 | INFO     | mean y: 5517856.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,144 | INFO     | intersect: -556583379317.6056
[2025-12-02 22:47:26] 2025-12-02 21:46:29,144 | INFO     | chi2: 6.136014357626714
[2025-12-02 22:47:26] 2025-12-02 21:46:29,144 | INFO     | current chi2=6.136014357626714 (change=2.4158755838510904 %)
[2025-12-02 22:47:26] 2025-12-02 21:46:29,144 | INFO     | left removable region: 20
[2025-12-02 22:47:26] 2025-12-02 21:46:29,144 | INFO     | sum of square deviations: 4340323240.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,145 | INFO     | sum of deviations: 1591002259799.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,145 | INFO     | mean x: 1764703955.0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,145 | INFO     | mean y: 5657384.634854772
[2025-12-02 22:47:26] 2025-12-02 21:46:29,145 | INFO     | intersect: -646869661579.2202
[2025-12-02 22:47:26] 2025-12-02 21:46:29,145 | INFO     | chi2: 2.126224616490739
[2025-12-02 22:47:26] 2025-12-02 21:46:29,145 | INFO     | current memory leak: 366.56 B/s (using 241 data points, chi2=2.13)
[2025-12-02 22:47:26] 2025-12-02 21:46:29,145 | INFO     | could have reported an average CPU frequency of 2956 MHz (12 samples)
[2025-12-02 22:47:26] 2025-12-02 21:46:29,146 | INFO     | ..............................
[2025-12-02 22:47:26] 2025-12-02 21:46:29,146 | INFO     | . Timing measurements:
[2025-12-02 22:47:26] 2025-12-02 21:46:29,146 | INFO     | . get job = 0 s
[2025-12-02 22:47:26] 2025-12-02 21:46:29,146 | INFO     | . initial setup = 4 s
[2025-12-02 22:47:26] 2025-12-02 21:46:29,146 | INFO     | . payload setup = 7 s
[2025-12-02 22:47:26] 2025-12-02 21:46:29,146 | INFO     | . stage-in = 0 s
[2025-12-02 22:47:26] 2025-12-02 21:46:29,146 | INFO     | . payload execution = 16567 s
[2025-12-02 22:47:26] 2025-12-02 21:46:29,146 | INFO     | . stage-out = 1 s
[2025-12-02 22:47:26] 2025-12-02 21:46:29,146 | INFO     | . log creation = 0 s
[2025-12-02 22:47:26] 2025-12-02 21:46:29,146 | INFO     | ..............................
[2025-12-02 22:47:26] 2025-12-02 21:46:29,195 | INFO     | 
[2025-12-02 22:47:26] 2025-12-02 21:46:29,195 | INFO     | job summary report
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | --------------------------------------------------
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | PanDA job id: 6898686865
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | task id: 47556161
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | errors: (none)
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | pilot state: finished 
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | transexitcode: 0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | exeerrorcode: 0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | exeerrordiag: 
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | exitcode: 0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | exitmsg: OK
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | cpuconsumptiontime: 122885 s
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | nevents: 1000
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | neventsw: 0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | pid: 20096
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | pgrp: 20096
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | corecount: 8
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | event service: False
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | sizes: {0: 2283488, 1: 2284470, 3: 2284732, 11: 2284760, 16578: 2317393, 16580: 2326601, 16584: 2326791}
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | --------------------------------------------------
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | 
[2025-12-02 22:47:26] 2025-12-02 21:46:29,196 | INFO     | executing command: ls -lF /tmp/job_10944597/atlas/pilot/slots/0
[2025-12-02 22:47:26] 2025-12-02 21:46:29,205 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,205 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,205 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,205 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,205 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,205 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | job 6898686865 has completed (purged errors)
[2025-12-02 22:47:26] 2025-12-02 21:46:29,206 | INFO     | overall cleanup function is called
[2025-12-02 22:47:26] 2025-12-02 21:46:29,674 | WARNING  | process 20096 can no longer be monitored (due to stat problems) - aborting
[2025-12-02 22:47:26] 2025-12-02 21:46:29,758 | INFO     | using path: /tmp/job_10944597/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 22:47:26] 2025-12-02 21:46:29,862 | INFO     | number of running child processes to parent process 20096: 1
[2025-12-02 22:47:26] 2025-12-02 21:46:29,863 | INFO     | maximum number of monitored processes: 16
[2025-12-02 22:47:26] 2025-12-02 21:46:29,863 | INFO     | aborting job monitoring since job object (job id=6898686865) has expired
[2025-12-02 22:47:26] 2025-12-02 21:46:30,213 | INFO     | --- collectZombieJob: --- 10, [20096]
[2025-12-02 22:47:26] 2025-12-02 21:46:30,214 | INFO     | zombie collector waiting for pid 20096
[2025-12-02 22:47:26] 2025-12-02 21:46:30,214 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 22:47:26] 2025-12-02 21:46:30,214 | INFO     | collected zombie processes
[2025-12-02 22:47:26] 2025-12-02 21:46:30,214 | INFO     | will attempt to kill all subprocesses of pid=20096
[2025-12-02 22:47:26] 2025-12-02 21:46:30,319 | INFO     | process IDs to be killed: [20096] (in reverse order)
[2025-12-02 22:47:26] 2025-12-02 21:46:30,360 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 22:47:26] 2025-12-02 21:46:30,360 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 22:47:26] 2025-12-02 21:46:30,364 | INFO     | did not find any defunct processes belonging to 20096
[2025-12-02 22:47:26] 2025-12-02 21:46:30,368 | INFO     | did not find any defunct processes belonging to 20096
[2025-12-02 22:47:26] 2025-12-02 21:46:30,368 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 22:47:26] 2025-12-02 21:46:30,368 | INFO     | ready for new job
[2025-12-02 22:47:26] 2025-12-02 21:46:30,368 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 22:47:26] 2025-12-02 21:46:30,369 | INFO     | ***************************************
[2025-12-02 22:47:26] 2025-12-02 21:46:30,369 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 22:47:26] 2025-12-02 21:46:30,369 | INFO     | ***************************************
[2025-12-02 22:47:26] 2025-12-02 21:46:30,369 | INFO     | 
[2025-12-02 22:47:26] 2025-12-02 21:46:30,384 | INFO     | architecture information:
[2025-12-02 22:47:26] 2025-12-02 21:46:30,384 | INFO     | executing command: cat /etc/os-release
[2025-12-02 22:47:26] 2025-12-02 21:46:30,390 | INFO     | cat /etc/os-release:
[2025-12-02 22:47:26] NAME="CentOS Linux"
[2025-12-02 22:47:26] VERSION="7 (Core)"
[2025-12-02 22:47:26] ID="centos"
[2025-12-02 22:47:26] ID_LIKE="rhel fedora"
[2025-12-02 22:47:26] VERSION_ID="7"
[2025-12-02 22:47:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 22:47:26] ANSI_COLOR="0;31"
[2025-12-02 22:47:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 22:47:26] HOME_URL="https://www.centos.org/"
[2025-12-02 22:47:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 22:47:26] 
[2025-12-02 22:47:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 22:47:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 22:47:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 22:47:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 22:47:26] 
[2025-12-02 22:47:26] 2025-12-02 21:46:30,390 | INFO     | ***************************************
[2025-12-02 22:47:26] 2025-12-02 21:46:30,893 | INFO     | executing command: df -mP /tmp/job_10944597/atlas/pilot/slots/0
[2025-12-02 22:47:26] 2025-12-02 21:46:30,899 | INFO     | sufficient remaining disk space (219697643520 B)
[2025-12-02 22:47:26] 2025-12-02 21:46:30,899 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 22:47:26] 2025-12-02 21:46:30,899 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 22:47:26] 2025-12-02 21:46:30,899 | INFO     | update_server=False
[2025-12-02 22:47:26] 2025-12-02 21:46:30,899 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 22:47:26] 2025-12-02 21:46:30,900 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 22:47:26] 2025-12-02 21:46:30,900 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 22:47:26] 2025-12-02 21:46:30,900 | INFO     | aborting loop
[2025-12-02 22:47:26] 2025-12-02 21:46:30,900 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 22:47:26] 2025-12-02 21:46:30,900 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 22:47:26] 2025-12-02 21:46:31,240 | INFO     | all payload control threads have been joined
[2025-12-02 22:47:26] 2025-12-02 21:46:31,694 | INFO     | all job control threads have been joined
[2025-12-02 22:47:26] 2025-12-02 21:46:31,905 | INFO     | [job] retrieve thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:31,905 | INFO     | [job] job monitor thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:31,905 | INFO     | [job] queue monitor thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:31,908 | INFO     | all data control threads have been joined
[2025-12-02 22:47:26] 2025-12-02 21:46:32,236 | INFO     | [payload] validate_post thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:32,245 | INFO     | [payload] control thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:32,267 | INFO     | [job] validate thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:32,700 | INFO     | [job] control thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:32,864 | INFO     | [data] copytool_in thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:32,905 | INFO     | [data] copytool_out thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:32,910 | INFO     | [data] control thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:32,930 | INFO     | [payload] failed_post thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:33,085 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:33,194 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:33,247 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:34,905 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:46:41,345 | INFO     | job.realtimelogging is not enabled
[2025-12-02 22:47:26] 2025-12-02 21:46:42,350 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 22:47:26] 2025-12-02 21:47:01,832 | INFO     | PID=11518 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 22:47:26] 2025-12-02 21:47:01,832 | INFO     | .. there are 5 such processes running
[2025-12-02 22:47:26] 2025-12-02 21:47:01,832 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 22:47:26] 2025-12-02 21:47:01,832 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 22:47:26] 2025-12-02 21:47:01,832 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 22:47:26] 2025-12-02 21:47:19,252 | INFO     | [monitor] cgroup control has ended
[2025-12-02 22:47:26] 2025-12-02 21:47:21,211 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-02 22:47:26] 2025-12-02 21:47:21,932 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 22:47:26] 2025-12-02 21:47:21,933 | INFO     | [monitor] control thread has ended
[2025-12-02 22:47:26] 2025-12-02 21:47:26,236 | INFO     | all workflow threads have been joined
[2025-12-02 22:47:26] 2025-12-02 21:47:26,236 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 22:47:26] 2025-12-02 21:47:26,236 | INFO     | traces error code: 0
[2025-12-02 22:47:26] 2025-12-02 21:47:26,236 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 22:47:26] 2025-12-02 21:47:26,292 [wrapper] ==== pilot stdout END ====
[2025-12-02 22:47:26] 2025-12-02 21:47:26,293 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 22:47:26] 2025-12-02 21:47:26,294 [wrapper] pilotpid: 11518
[2025-12-02 22:47:26] 2025-12-02 21:47:26,295 [wrapper] Pilot exit status: 0
[2025-12-02 22:47:26] 2025-12-02 21:47:26,300 [wrapper] pandaids: 6898686865
[2025-12-02 22:47:26] 2025-12-02 21:47:26,325 [wrapper] cleanup supervisor_pilot  9123 11519
[2025-12-02 22:47:26] 2025-12-02 21:47:26,326 [wrapper] Test setup, not cleaning
[2025-12-02 22:47:26] 2025-12-02 21:47:26,327 [wrapper] apfmon messages muted
[2025-12-02 22:47:26] 2025-12-02 21:47:26,328 [wrapper] ==== wrapper stdout END ====
[2025-12-02 22:47:26] 2025-12-02 21:47:26,330 [wrapper] ==== wrapper stderr END ====
[2025-12-02 22:47:26]  *** Error codes and diagnostics ***
[2025-12-02 22:47:26]     "exeErrorCode": 0,
[2025-12-02 22:47:26]     "exeErrorDiag": "",
[2025-12-02 22:47:26]     "pilotErrorCode": 0,
[2025-12-02 22:47:26]     "pilotErrorDiag": "",
[2025-12-02 22:47:26]  *** Listing of results directory ***
[2025-12-02 22:47:26] total 1309540
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user    576529 Nov 26 17:12 pilot3.tar.gz
[2025-12-02 22:47:26] -rwx------ 1 mf493845 unix-user     36292 Nov 26 17:36 runpilot2-wrapper.sh
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user      5112 Nov 26 17:37 queuedata.json
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user       100 Dec  2 16:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 22:47:26] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 16:24 run_atlas
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user       105 Dec  2 16:24 job.xml
[2025-12-02 22:47:26] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:09 start_atlas.sh
[2025-12-02 22:47:26] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 18:09 shared
[2025-12-02 22:47:26] -rw-r--r-- 2 mf493845 unix-user    590105 Dec  2 18:09 input.tar.gz
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user      6391 Dec  2 18:09 init_data.xml
[2025-12-02 22:47:26] -rw-r--r-- 2 mf493845 unix-user 411135613 Dec  2 18:09 EVNT.47483658._002660.pool.root.1
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user         0 Dec  2 18:09 boinc_setup_complete
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user      8192 Dec  2 18:09 boinc_mmap_file
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user         0 Dec  2 18:09 boinc_lockfile
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user      2787 Dec  2 18:09 pandaJob.out
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user    988852 Dec  2 18:09 agis_schedconf.cvmfs.json
[2025-12-02 22:47:26] drwx------ 5 mf493845 unix-user       440 Dec  2 18:09 pilot3
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user 918059389 Dec  2 22:45 HITS.47556161._006424.pool.root.1
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user        95 Dec  2 22:46 pilot_heartbeat.json
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user      1033 Dec  2 22:46 memory_monitor_summary.json
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user   1516240 Dec  2 22:46 agis_ddmendpoints.agis.ALL.json
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user   1566109 Dec  2 22:46 log.47556161._006424.job.log.tgz.1
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user      8606 Dec  2 22:46 heartbeat.json
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user      4907 Dec  2 22:47 pilotlog.txt
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user   2376027 Dec  2 22:47 log.47556161._006424.job.log.1
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user       353 Dec  2 22:47 output.list
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user       620 Dec  2 22:47 runtime_log
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user   3962880 Dec  2 22:47 result.tar.gz
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user      9221 Dec  2 22:47 runtime_log.err
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user       651 Dec  2 22:47 n5bMDmCgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm16JKDmojQ7tn.diag
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user     21614 Dec  2 22:47 stderr.txt
[2025-12-02 22:47:26] HITS file was successfully produced:
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user 918059389 Dec  2 22:45 shared/HITS.pool.root.1
[2025-12-02 22:47:26]  *** Contents of shared directory: ***
[2025-12-02 22:47:26] total 1302512
[2025-12-02 22:47:26] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 18:09 start_atlas.sh
[2025-12-02 22:47:26] -rw-r--r-- 2 mf493845 unix-user    590105 Dec  2 18:09 input.tar.gz
[2025-12-02 22:47:26] -rw-r--r-- 2 mf493845 unix-user 411135613 Dec  2 18:09 ATLAS.root_0
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user 918059389 Dec  2 22:45 HITS.pool.root.1
[2025-12-02 22:47:26] -rw------- 1 mf493845 unix-user   3962880 Dec  2 22:47 result.tar.gz
22:47:27 (6478): run_atlas exited; CPU time 123092.015890
22:47:27 (6478): called boinc_finish(0)

</stderr_txt>
]]>

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