Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
11:59:46 (420529): wrapper (7.7.26015): starting
11:59:46 (420529): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 11:59:46] Arguments: --nthreads 12
[2025-12-02 11:59:46] Threads: 12
[2025-12-02 11:59:46] Checking for CVMFS
[2025-12-02 11:59:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 11:59:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 11:59:46] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 11:59:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 11:59:46] 2.13.3.0 4869 894 50792 153562 0 68 6561676 10240000 582 130560 0 3954656 99.995 149514 1355 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-02 11:59:46] CVMFS is ok
[2025-12-02 11:59:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 11:59:46] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-02 11:59:46] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-02 11:59:46] Further information can be found at the LHC@home message board.
[2025-12-02 11:59:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 11:59:46] Checking for apptainer binary...
[2025-12-02 11:59:46] apptainer is not installed, using version from CVMFS
[2025-12-02 11:59:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 11:59:46] pots
[2025-12-02 11:59:46] apptainer works
[2025-12-02 11:59:46] Set ATHENA_PROC_NUMBER=12
[2025-12-02 11:59:46] Set ATHENA_CORE_NUMBER=12
[2025-12-02 11:59:46] Starting ATLAS job with PandaID=6901172481
[2025-12-02 11:59:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 13:15:07]  *** The last 200 lines of the pilot log: ***
[2025-12-02 13:15:07]  replicas=None
[2025-12-02 13:15:07]  scope=mc16_13TeV
[2025-12-02 13:15:07]  status=None
[2025-12-02 13:15:07]  status_code=0
[2025-12-02 13:15:07]  storage_token=
[2025-12-02 13:15:07]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6901172481/log.47531058._001734.job.log.tgz.1
[2025-12-02 13:15:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/d7/a2/log.47531058._001734.job.log.tgz.1
[2025-12-02 13:15:07]  workdir=None
[2025-12-02 13:15:07] ]
[2025-12-02 13:15:07] 2025-12-02 18:14:10,629 | INFO     | transferring file log.47531058._001734.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6901172481/log.47531058._001734.job.log.tgz.1 to /var/lib/boinc
[2025-12-02 13:15:07] 2025-12-02 18:14:10,629 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6901172481/log.47531058._001734.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.475310
[2025-12-02 13:15:07] 2025-12-02 18:14:10,645 | INFO     | adding to output.list: log.47531058._001734.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/d7/a2/log.47531058._001734.job.log.tgz.
[2025-12-02 13:15:07] 2025-12-02 18:14:10,645 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-02 13:15:07] 2025-12-02 18:14:10,645 | INFO     | summary of transferred files:
[2025-12-02 13:15:07] 2025-12-02 18:14:10,645 | INFO     |  -- lfn=log.47531058._001734.job.log.tgz.1, status_code=0, status=transferred
[2025-12-02 13:15:07] 2025-12-02 18:14:10,645 | INFO     | stage-out finished correctly
[2025-12-02 13:15:07] 2025-12-02 18:14:10,646 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 13:15:07] 2025-12-02 18:14:10,664 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-02 13:15:07] 2025-12-02 18:14:10,823 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 13:15:07] 2025-12-02 18:14:10,823 | INFO     | job 6901172481 has state=finished
[2025-12-02 13:15:07] 2025-12-02 18:14:10,824 | INFO     | preparing for final server update for job 6901172481 in state='finished'
[2025-12-02 13:15:07] 2025-12-02 18:14:11,291 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-12-02 13:15:07] 2025-12-02 18:14:11,291 | INFO     | this job has now completed (state=finished)
[2025-12-02 13:15:07] 2025-12-02 18:14:11,291 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-02 13:15:07] 2025-12-02 18:14:11,291 | INFO     | log transfer has been attempted: DONE
[2025-12-02 13:15:07] 2025-12-02 18:14:11,291 | INFO     | job 6901172481 has finished - writing final server update
[2025-12-02 13:15:07] 2025-12-02 18:14:11,292 | INFO     | total number of processed events: 1000 (read)
[2025-12-02 13:15:07] 2025-12-02 18:14:11,293 | INFO     | executing command: lscpu
[2025-12-02 13:15:07] 2025-12-02 18:14:11,310 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-02 13:15:07] 2025-12-02 18:14:12,354 | INFO     | monitor loop #342: job 0:6901172481 is in state 'finished'
[2025-12-02 13:15:07] 2025-12-02 18:14:12,355 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 13:15:07] 2025-12-02 18:14:12,594 | INFO     | time since job start (4459s) is within the limit (172800.0s)
[2025-12-02 13:15:07] 2025-12-02 18:14:14,599 | INFO     | time since job start (4461s) is within the limit (172800.0s)
[2025-12-02 13:15:07] 2025-12-02 18:14:14,857 | INFO     | monitor loop #343: job 0:6901172481 is in state 'finished'
[2025-12-02 13:15:07] 2025-12-02 18:14:14,857 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 13:15:07] 2025-12-02 18:14:16,604 | INFO     | time since job start (4463s) is within the limit (172800.0s)
[2025-12-02 13:15:07] 2025-12-02 18:14:17,360 | INFO     | monitor loop #344: job 0:6901172481 is in state 'finished'
[2025-12-02 13:15:07] 2025-12-02 18:14:17,360 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 13:15:07] 2025-12-02 18:14:18,478 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 13:15:07] 2025-12-02 18:14:18,479 | INFO     | found 14 cores (14 cores per socket, 1 socket) , CPU MHz: 3414.1026428571427
[2025-12-02 13:15:07] 2025-12-02 18:14:18,480 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6901172481/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 13:15:07] 2025-12-02 18:14:18,480 | INFO     | extracted standard info from prmon json
[2025-12-02 13:15:07] 2025-12-02 18:14:18,480 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 13:15:07] 2025-12-02 18:14:18,480 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | fitting pss+swap vs Time
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | sum of square deviations: 89127252.5
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | sum of deviations: 6633018610.0
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | mean x: 1764697100.5
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | mean y: 4178964.1515151514
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | intersect: -131327915095.73819
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | chi2: 0.0396781092739454
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | current memory leak: 74.42 B/s (using 66 data points, chi2=0.04)
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | could have reported an average CPU frequency of 3407 MHz (6 samples)
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | ..............................
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | . Timing measurements:
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | . get job = 0 s
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | . initial setup = 2 s
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | . payload setup = 5 s
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | . stage-in = 0 s
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | . payload execution = 4433 s
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | . stage-out = 0 s
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | . log creation = 0 s
[2025-12-02 13:15:07] 2025-12-02 18:14:18,481 | INFO     | ..............................
[2025-12-02 13:15:07] 2025-12-02 18:14:18,502 | INFO     | 
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | job summary report
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | --------------------------------------------------
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | PanDA job id: 6901172481
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | task id: 47531058
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | errors: (none)
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | pilot state: finished 
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | transexitcode: 0
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | exeerrorcode: 0
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | exeerrordiag: 
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | exitcode: 0
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | exitmsg: OK
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | cpuconsumptiontime: 49095 s
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | nevents: 1000
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | neventsw: 0
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | pid: 431468
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | pgrp: 431468
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | corecount: 12
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | event service: False
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | sizes: {0: 2284461, 2: 2284723, 11: 2284751, 4441: 2331436, 4442: 2331435, 4444: 2340683, 4452: 2340873}
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | --------------------------------------------------
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | 
[2025-12-02 13:15:07] 2025-12-02 18:14:18,503 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,512 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 13:15:07] 2025-12-02 18:14:18,513 | INFO     | job 6901172481 has completed (purged errors)
[2025-12-02 13:15:07] 2025-12-02 18:14:18,513 | INFO     | overall cleanup function is called
[2025-12-02 13:15:07] 2025-12-02 18:14:19,522 | INFO     | --- collectZombieJob: --- 10, [431468]
[2025-12-02 13:15:07] 2025-12-02 18:14:19,522 | INFO     | zombie collector waiting for pid 431468
[2025-12-02 13:15:07] 2025-12-02 18:14:19,522 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 13:15:07] 2025-12-02 18:14:19,522 | INFO     | collected zombie processes
[2025-12-02 13:15:07] 2025-12-02 18:14:19,522 | INFO     | will attempt to kill all subprocesses of pid=431468
[2025-12-02 13:15:07] 2025-12-02 18:14:19,585 | INFO     | process IDs to be killed: [431468] (in reverse order)
[2025-12-02 13:15:07] 2025-12-02 18:14:19,628 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 13:15:07] 2025-12-02 18:14:19,628 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 13:15:07] 2025-12-02 18:14:19,630 | INFO     | did not find any defunct processes belonging to 431468
[2025-12-02 13:15:07] 2025-12-02 18:14:19,631 | INFO     | did not find any defunct processes belonging to 431468
[2025-12-02 13:15:07] 2025-12-02 18:14:19,632 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 13:15:07] 2025-12-02 18:14:19,632 | INFO     | ready for new job
[2025-12-02 13:15:07] 2025-12-02 18:14:19,632 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 13:15:07] 2025-12-02 18:14:19,633 | INFO     | ***************************************
[2025-12-02 13:15:07] 2025-12-02 18:14:19,633 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 13:15:07] 2025-12-02 18:14:19,633 | INFO     | ***************************************
[2025-12-02 13:15:07] 2025-12-02 18:14:19,633 | INFO     | 
[2025-12-02 13:15:07] 2025-12-02 18:14:19,633 | INFO     | architecture information:
[2025-12-02 13:15:07] 2025-12-02 18:14:19,633 | INFO     | executing command: cat /etc/os-release
[2025-12-02 13:15:07] 2025-12-02 18:14:19,648 | INFO     | cat /etc/os-release:
[2025-12-02 13:15:07] NAME="CentOS Linux"
[2025-12-02 13:15:07] VERSION="7 (Core)"
[2025-12-02 13:15:07] ID="centos"
[2025-12-02 13:15:07] ID_LIKE="rhel fedora"
[2025-12-02 13:15:07] VERSION_ID="7"
[2025-12-02 13:15:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 13:15:07] ANSI_COLOR="0;31"
[2025-12-02 13:15:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 13:15:07] HOME_URL="https://www.centos.org/"
[2025-12-02 13:15:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 13:15:07] 
[2025-12-02 13:15:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 13:15:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 13:15:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 13:15:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 13:15:07] 
[2025-12-02 13:15:07] 2025-12-02 18:14:19,649 | INFO     | ***************************************
[2025-12-02 13:15:07] 2025-12-02 18:14:20,151 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-12-02 13:15:07] 2025-12-02 18:14:20,166 | INFO     | sufficient remaining disk space (392569028608 B)
[2025-12-02 13:15:07] 2025-12-02 18:14:20,166 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 13:15:07] 2025-12-02 18:14:20,166 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 13:15:07] 2025-12-02 18:14:20,167 | INFO     | update_server=False
[2025-12-02 13:15:07] 2025-12-02 18:14:20,167 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 13:15:07] 2025-12-02 18:14:20,167 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 13:15:07] 2025-12-02 18:14:20,356 | INFO     | all job control threads have been joined
[2025-12-02 13:15:07] 2025-12-02 18:14:20,572 | INFO     | all data control threads have been joined
[2025-12-02 13:15:07] 2025-12-02 18:14:20,868 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 13:15:07] 2025-12-02 18:14:20,868 | INFO     | aborting loop
[2025-12-02 13:15:07] 2025-12-02 18:14:21,172 | INFO     | [job] retrieve thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:21,173 | INFO     | [job] queue monitor thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:21,175 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 13:15:07] 2025-12-02 18:14:21,194 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 13:15:07] 2025-12-02 18:14:21,358 | INFO     | [job] control thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:21,361 | INFO     | all payload control threads have been joined
[2025-12-02 13:15:07] 2025-12-02 18:14:21,575 | INFO     | [data] control thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:21,852 | INFO     | [payload] failed_post thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:21,874 | INFO     | [job] job monitor thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:22,366 | INFO     | [payload] control thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:22,384 | INFO     | [job] validate thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:22,409 | INFO     | [payload] validate_post thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:22,415 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:22,562 | INFO     | [data] copytool_in thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:22,568 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:22,605 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:23,180 | INFO     | [data] copytool_out thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:25,200 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:31,192 | INFO     | job.realtimelogging is not enabled
[2025-12-02 13:15:07] 2025-12-02 18:14:32,197 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 13:15:07] 2025-12-02 18:14:49,769 | INFO     | PID=424270 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 13:15:07] 2025-12-02 18:14:49,769 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 13:15:07] 2025-12-02 18:14:49,769 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 13:15:07] 2025-12-02 18:14:49,769 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 13:15:07] 2025-12-02 18:14:50,849 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-12-02 13:15:07] 2025-12-02 18:15:00,839 | INFO     | [monitor] cgroup control has ended
[2025-12-02 13:15:07] 2025-12-02 18:15:02,621 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124102595041088)>', '<ExcThread(monitor, started 124101662336768)>']
[2025-12-02 13:15:07] 2025-12-02 18:15:02,834 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 13:15:07] 2025-12-02 18:15:02,834 | INFO     | [monitor] control thread has ended
[2025-12-02 13:15:07] 2025-12-02 18:15:07,646 | INFO     | all workflow threads have been joined
[2025-12-02 13:15:07] 2025-12-02 18:15:07,646 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 13:15:07] 2025-12-02 18:15:07,647 | INFO     | traces error code: 0
[2025-12-02 13:15:07] 2025-12-02 18:15:07,647 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 13:15:07] 2025-12-02 18:15:07,695 [wrapper] ==== pilot stdout END ====
[2025-12-02 13:15:07] 2025-12-02 18:15:07,698 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 13:15:07] 2025-12-02 18:15:07,702 [wrapper] pilotpid: 424270
[2025-12-02 13:15:07] 2025-12-02 18:15:07,705 [wrapper] Pilot exit status: 0
[2025-12-02 13:15:07] 2025-12-02 18:15:07,713 [wrapper] pandaids: 6901172481
[2025-12-02 13:15:07] 2025-12-02 18:15:07,726 [wrapper] cleanup supervisor_pilot  471152 424271
[2025-12-02 13:15:07] 2025-12-02 18:15:07,729 [wrapper] Test setup, not cleaning
[2025-12-02 13:15:07] 2025-12-02 18:15:07,731 [wrapper] apfmon messages muted
[2025-12-02 13:15:07] 2025-12-02 18:15:07,733 [wrapper] ==== wrapper stdout END ====
[2025-12-02 13:15:07] 2025-12-02 18:15:07,736 [wrapper] ==== wrapper stderr END ====
[2025-12-02 13:15:07]  *** Error codes and diagnostics ***
[2025-12-02 13:15:07]     "exeErrorCode": 0,
[2025-12-02 13:15:07]     "exeErrorDiag": "",
[2025-12-02 13:15:07]     "pilotErrorCode": 0,
[2025-12-02 13:15:07]     "pilotErrorDiag": "",
[2025-12-02 13:15:07]  *** Listing of results directory ***
[2025-12-02 13:15:07] total 1062984
[2025-12-02 13:15:07] -rw-r--r-- 1 root root    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-02 13:15:07] -rw-r--r-- 1 root root      5112 Nov 29 04:19 queuedata.json
[2025-12-02 13:15:07] -rwx------ 1 4871 1028     36292 Nov 29 04:19 runpilot2-wrapper.sh
[2025-12-02 13:15:07] -rw-r--r-- 1 root root       100 Dec  2 11:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 13:15:07] -rwxr-xr-x 1 root root      7986 Dec  2 11:59 run_atlas
[2025-12-02 13:15:07] -rw-r--r-- 1 root root       105 Dec  2 11:59 job.xml
[2025-12-02 13:15:07] -rw-r--r-- 2 root root 375677429 Dec  2 11:59 EVNT.47531050._000558.pool.root.1
[2025-12-02 13:15:07] -rw-r--r-- 1 root root      9318 Dec  2 11:59 init_data.xml
[2025-12-02 13:15:07] drwxrwx--x 2 root root      4096 Dec  2 11:59 shared
[2025-12-02 13:15:07] -rw-r--r-- 2 root root    590123 Dec  2 11:59 input.tar.gz
[2025-12-02 13:15:07] -rw-r--r-- 2 root root     15847 Dec  2 11:59 start_atlas.sh
[2025-12-02 13:15:07] -rw-r--r-- 1 root root         0 Dec  2 11:59 boinc_lockfile
[2025-12-02 13:15:07] -rw-r--r-- 1 root root      2881 Dec  2 11:59 pandaJob.out
[2025-12-02 13:15:07] -rw------- 1 root root    988852 Dec  2 11:59 agis_schedconf.cvmfs.json
[2025-12-02 13:15:07] -rw------- 1 root root   1516240 Dec  2 11:59 agis_ddmendpoints.agis.ALL.json
[2025-12-02 13:15:07] drwxr-xr-x 5  320  320      4096 Dec  2 11:59 pilot3
[2025-12-02 13:15:07] -rw-r--r-- 1 root root       530 Dec  2 13:11 boinc_task_state.xml
[2025-12-02 13:15:07] -rw------- 1 root root 703635099 Dec  2 13:13 HITS.47531058._001734.pool.root.1
[2025-12-02 13:15:07] -rw------- 1 root root      1039 Dec  2 13:14 memory_monitor_summary.json
[2025-12-02 13:15:07] -rw------- 1 root root   1936081 Dec  2 13:14 log.47531058._001734.job.log.tgz.1
[2025-12-02 13:15:07] -rw------- 1 root root     28330 Dec  2 13:14 heartbeat.json
[2025-12-02 13:15:07] -rw-r--r-- 1 root root      8192 Dec  2 13:14 boinc_mmap_file
[2025-12-02 13:15:07] -rw-r--r-- 1 root root        27 Dec  2 13:14 wrapper_checkpoint.txt
[2025-12-02 13:15:07] -rw------- 1 root root        95 Dec  2 13:14 pilot_heartbeat.json
[2025-12-02 13:15:07] -rw------- 1 root root      4827 Dec  2 13:15 pilotlog.txt
[2025-12-02 13:15:07] -rw------- 1 root root    678707 Dec  2 13:15 log.47531058._001734.job.log.1
[2025-12-02 13:15:07] -rw------- 1 root root       353 Dec  2 13:15 output.list
[2025-12-02 13:15:07] -rw-r--r-- 1 root root       620 Dec  2 13:15 runtime_log
[2025-12-02 13:15:07] -rw------- 1 root root   2652160 Dec  2 13:15 result.tar.gz
[2025-12-02 13:15:07] -rw-r--r-- 1 root root      8861 Dec  2 13:15 runtime_log.err
[2025-12-02 13:15:07] -rw------- 1 root root       647 Dec  2 13:15 aSDNDmyHWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxzOKDm7Szvgn.diag
[2025-12-02 13:15:07] -rw-r--r-- 1 root root     22318 Dec  2 13:15 stderr.txt
[2025-12-02 13:15:07] HITS file was successfully produced:
[2025-12-02 13:15:07] -rw------- 1 root root 703635099 Dec  2 13:13 shared/HITS.pool.root.1
[2025-12-02 13:15:07]  *** Contents of shared directory: ***
[2025-12-02 13:15:07] total 1057216
[2025-12-02 13:15:07] -rw-r--r-- 2 root root 375677429 Dec  2 11:59 ATLAS.root_0
[2025-12-02 13:15:07] -rw-r--r-- 2 root root    590123 Dec  2 11:59 input.tar.gz
[2025-12-02 13:15:07] -rw-r--r-- 2 root root     15847 Dec  2 11:59 start_atlas.sh
[2025-12-02 13:15:07] -rw------- 1 root root 703635099 Dec  2 13:13 HITS.pool.root.1
[2025-12-02 13:15:07] -rw------- 1 root root   2652160 Dec  2 13:15 result.tar.gz
13:15:09 (420529): run_atlas exited; CPU time 49046.725162
13:15:09 (420529): called boinc_finish(0)

</stderr_txt>
]]>

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