Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
21:27:31 (630834): wrapper (7.7.26015): starting
21:27:31 (630834): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 21:27:31] Arguments: --nthreads 12
[2025-12-02 21:27:31] Threads: 12
[2025-12-02 21:27:31] Checking for CVMFS
[2025-12-02 21:27:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 21:28:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 21:28:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 21:28:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 21:28:14] 2.13.3.0 4869 1462 49020 153577 2 73 6650622 10240000 1512 130560 0 6466501 99.996 166980 1223 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-02 21:28:14] CVMFS is ok
[2025-12-02 21:28:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 21:28:14] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-02 21:28:14] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-02 21:28:14] Further information can be found at the LHC@home message board.
[2025-12-02 21:28:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 21:28:14] Checking for apptainer binary...
[2025-12-02 21:28:14] apptainer is not installed, using version from CVMFS
[2025-12-02 21:28:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 21:28:14] pots
[2025-12-02 21:28:14] apptainer works
[2025-12-02 21:28:14] Set ATHENA_PROC_NUMBER=12
[2025-12-02 21:28:14] Set ATHENA_CORE_NUMBER=12
[2025-12-02 21:28:14] Starting ATLAS job with PandaID=6895329430
[2025-12-02 21:28:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 23:56:54]  *** The last 200 lines of the pilot log: ***
[2025-12-02 23:56:54] 2025-12-03 04:56:04,266 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 23:56:54] 2025-12-03 04:56:04,285 | INFO     | PID=634930 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 23:56:54] 2025-12-03 04:56:05,286 | INFO     | time since job start (8730s) is within the limit (172800.0s)
[2025-12-02 23:56:54] 2025-12-03 04:56:05,831 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 23:56:54] 2025-12-03 04:56:05,833 | INFO     | found 14 cores (14 cores per socket, 1 socket) , CPU MHz: 3287.3585
[2025-12-02 23:56:54] 2025-12-03 04:56:05,835 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6895329430/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 23:56:54] 2025-12-03 04:56:05,835 | INFO     | extracted standard info from prmon json
[2025-12-02 23:56:54] 2025-12-03 04:56:05,835 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 23:56:54] 2025-12-03 04:56:05,835 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 23:56:54] 2025-12-03 04:56:05,836 | INFO     | fitting pss+swap vs Time
[2025-12-02 23:56:54] 2025-12-03 04:56:05,836 | INFO     | sum of square deviations: 887793734.7957741
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | sum of deviations: 22640753151.478878
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | mean x: 1764733357.5704226
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | mean y: 3405370.352112676
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | intersect: -45001296466.30094
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | chi2: 4.738057079894006
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | sum of square deviations: 797274157.2700719
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | sum of deviations: 69476986183.60583
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | mean x: 1764733205.0729928
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | mean y: 3483621.8394160583
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | intersect: -153780937193.2378
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | chi2: 2.0903059215498314
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | current chi2=2.0903059215498314 (change=55.8826353017133 %)
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | sum of square deviations: 713126792.2424258
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | sum of deviations: 64371382870.03028
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | mean x: 1764733052.5757575
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | mean y: 3474364.946969697
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | intersect: -159292611866.14487
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | chi2: 2.0934069319662267
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | current chi2=2.0934069319662267 (change=-0.1483519892674904 %)
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | right removable region: 131
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | sum of square deviations: 797268057.2700719
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | sum of deviations: -16899747880.802914
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | mean x: 1764733510.0729928
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | mean y: 3471189.0802919706
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | intersect: 37410653284.34304
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | chi2: 2.7827252680906445
[2025-12-02 23:56:54] 2025-12-03 04:56:05,837 | INFO     | current chi2=2.7827252680906445 (change=41.268641952433036 %)
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | sum of square deviations: 713114592.2424258
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | sum of deviations: -21532498037.03031
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | mean x: 1764733662.5757575
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | mean y: 3479545.303030303
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | intersect: 53289619723.42447
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | chi2: 2.771101227362573
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | current chi2=2.771101227362573 (change=0.4177214639678471 %)
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | left removable region: 20
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | sum of square deviations: 424027112.27027035
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | sum of deviations: 13940404119.270271
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | mean x: 1764733632.0810812
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | mean y: 3572972.7477477477
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | intersect: -58014179388.32631
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | chi2: 0.014892127770801565
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | current memory leak: 32.88 B/s (using 111 data points, chi2=0.01)
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | could have reported an average CPU frequency of 4575 MHz (8 samples)
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | ..............................
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | . Timing measurements:
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | . get job = 0 s
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | . initial setup = 2 s
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | . payload setup = 3 s
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | . stage-in = 0 s
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | . payload execution = 8618 s
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | . stage-out = 0 s
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | . log creation = 0 s
[2025-12-02 23:56:54] 2025-12-03 04:56:05,838 | INFO     | ..............................
[2025-12-02 23:56:54] 2025-12-03 04:56:05,855 | INFO     | 
[2025-12-02 23:56:54] 2025-12-03 04:56:05,855 | INFO     | job summary report
[2025-12-02 23:56:54] 2025-12-03 04:56:05,856 | INFO     | --------------------------------------------------
[2025-12-02 23:56:54] 2025-12-03 04:56:05,856 | INFO     | PanDA job id: 6895329430
[2025-12-02 23:56:54] 2025-12-03 04:56:05,856 | INFO     | task id: 47556137
[2025-12-02 23:56:54] 2025-12-03 04:56:05,856 | INFO     | errors: (none)
[2025-12-02 23:56:54] 2025-12-03 04:56:05,856 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 23:56:54] 2025-12-03 04:56:05,856 | INFO     | pilot state: finished 
[2025-12-02 23:56:54] 2025-12-03 04:56:05,856 | INFO     | transexitcode: 0
[2025-12-02 23:56:54] 2025-12-03 04:56:05,856 | INFO     | exeerrorcode: 0
[2025-12-02 23:56:54] 2025-12-03 04:56:05,856 | INFO     | exeerrordiag: 
[2025-12-02 23:56:54] 2025-12-03 04:56:05,857 | INFO     | exitcode: 0
[2025-12-02 23:56:54] 2025-12-03 04:56:05,857 | INFO     | exitmsg: OK
[2025-12-02 23:56:54] 2025-12-03 04:56:05,857 | INFO     | cpuconsumptiontime: 60726 s
[2025-12-02 23:56:54] 2025-12-03 04:56:05,857 | INFO     | nevents: 1000
[2025-12-02 23:56:54] 2025-12-03 04:56:05,857 | INFO     | neventsw: 0
[2025-12-02 23:56:54] 2025-12-03 04:56:05,857 | INFO     | pid: 641385
[2025-12-02 23:56:54] 2025-12-03 04:56:05,857 | INFO     | pgrp: 641385
[2025-12-02 23:56:54] 2025-12-03 04:56:05,857 | INFO     | corecount: 12
[2025-12-02 23:56:54] 2025-12-03 04:56:05,857 | INFO     | event service: False
[2025-12-02 23:56:54] 2025-12-03 04:56:05,857 | INFO     | sizes: {0: 2284322, 3: 2284584, 10: 2284612, 8625: 2322427, 8629: 2322427, 8716: 2322673}
[2025-12-02 23:56:54] 2025-12-03 04:56:05,858 | INFO     | --------------------------------------------------
[2025-12-02 23:56:54] 2025-12-03 04:56:05,858 | INFO     | 
[2025-12-02 23:56:54] 2025-12-03 04:56:05,858 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-12-02 23:56:54] 2025-12-03 04:56:05,875 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,875 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,875 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,875 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,875 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,875 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,875 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,875 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,875 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,875 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,875 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,875 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,875 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,876 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,876 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,876 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,876 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,876 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 23:56:54] 2025-12-03 04:56:05,876 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,876 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 23:56:54] 2025-12-03 04:56:05,876 | INFO     | job 6895329430 has completed (purged errors)
[2025-12-02 23:56:54] 2025-12-03 04:56:05,876 | INFO     | overall cleanup function is called
[2025-12-02 23:56:54] 2025-12-03 04:56:06,885 | INFO     | --- collectZombieJob: --- 10, [641385]
[2025-12-02 23:56:54] 2025-12-03 04:56:06,885 | INFO     | zombie collector waiting for pid 641385
[2025-12-02 23:56:54] 2025-12-03 04:56:06,885 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 23:56:54] 2025-12-03 04:56:06,886 | INFO     | collected zombie processes
[2025-12-02 23:56:54] 2025-12-03 04:56:06,886 | INFO     | will attempt to kill all subprocesses of pid=641385
[2025-12-02 23:56:54] 2025-12-03 04:56:06,961 | INFO     | process IDs to be killed: [641385] (in reverse order)
[2025-12-02 23:56:54] 2025-12-03 04:56:07,005 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 23:56:54] 2025-12-03 04:56:07,005 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 23:56:54] 2025-12-03 04:56:07,006 | INFO     | did not find any defunct processes belonging to 641385
[2025-12-02 23:56:54] 2025-12-03 04:56:07,007 | INFO     | did not find any defunct processes belonging to 641385
[2025-12-02 23:56:54] 2025-12-03 04:56:07,008 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 23:56:54] 2025-12-03 04:56:07,008 | INFO     | ready for new job
[2025-12-02 23:56:54] 2025-12-03 04:56:07,008 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 23:56:54] 2025-12-03 04:56:07,008 | INFO     | ***************************************
[2025-12-02 23:56:54] 2025-12-03 04:56:07,008 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 23:56:54] 2025-12-03 04:56:07,008 | INFO     | ***************************************
[2025-12-02 23:56:54] 2025-12-03 04:56:07,008 | INFO     | 
[2025-12-02 23:56:54] 2025-12-03 04:56:07,009 | INFO     | architecture information:
[2025-12-02 23:56:54] 2025-12-03 04:56:07,009 | INFO     | executing command: cat /etc/os-release
[2025-12-02 23:56:54] 2025-12-03 04:56:07,017 | INFO     | cat /etc/os-release:
[2025-12-02 23:56:54] NAME="CentOS Linux"
[2025-12-02 23:56:54] VERSION="7 (Core)"
[2025-12-02 23:56:54] ID="centos"
[2025-12-02 23:56:54] ID_LIKE="rhel fedora"
[2025-12-02 23:56:54] VERSION_ID="7"
[2025-12-02 23:56:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 23:56:54] ANSI_COLOR="0;31"
[2025-12-02 23:56:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 23:56:54] HOME_URL="https://www.centos.org/"
[2025-12-02 23:56:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 23:56:54] 
[2025-12-02 23:56:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 23:56:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 23:56:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 23:56:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 23:56:54] 
[2025-12-02 23:56:54] 2025-12-03 04:56:07,017 | INFO     | ***************************************
[2025-12-02 23:56:54] 2025-12-03 04:56:07,520 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-12-02 23:56:54] 2025-12-03 04:56:07,535 | INFO     | sufficient remaining disk space (348318072832 B)
[2025-12-02 23:56:54] 2025-12-03 04:56:07,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 23:56:54] 2025-12-03 04:56:07,535 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 23:56:54] 2025-12-03 04:56:07,536 | INFO     | update_server=False
[2025-12-02 23:56:54] 2025-12-03 04:56:07,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 23:56:54] 2025-12-03 04:56:07,536 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:56:54] 2025-12-03 04:56:07,544 | INFO     | all data control threads have been joined
[2025-12-02 23:56:54] 2025-12-03 04:56:07,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:56:54] 2025-12-03 04:56:07,774 | INFO     | aborting loop
[2025-12-02 23:56:54] 2025-12-03 04:56:07,873 | INFO     | all payload control threads have been joined
[2025-12-02 23:56:54] 2025-12-03 04:56:08,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 23:56:54] 2025-12-03 04:56:08,541 | INFO     | [job] retrieve thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:08,542 | INFO     | [job] queue monitor thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:08,548 | INFO     | [data] control thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:08,663 | INFO     | [payload] failed_post thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:08,664 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:08,674 | INFO     | all job control threads have been joined
[2025-12-02 23:56:54] 2025-12-03 04:56:08,780 | INFO     | [job] job monitor thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:08,878 | INFO     | [payload] control thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:09,035 | INFO     | [job] validate thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:09,064 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:09,099 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:09,522 | INFO     | [data] copytool_in thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:09,679 | INFO     | [job] control thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:09,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 23:56:54] 2025-12-03 04:56:10,117 | INFO     | [payload] validate_post thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:10,323 | INFO     | [data] copytool_out thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:13,790 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:17,869 | INFO     | job.realtimelogging is not enabled
[2025-12-02 23:56:54] 2025-12-03 04:56:18,874 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 23:56:54] 2025-12-03 04:56:38,469 | INFO     | PID=634930 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 23:56:54] 2025-12-03 04:56:38,469 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 23:56:54] 2025-12-03 04:56:38,469 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 23:56:54] 2025-12-03 04:56:38,469 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 23:56:54] 2025-12-03 04:56:49,162 | INFO     | [monitor] cgroup control has ended
[2025-12-02 23:56:54] 2025-12-03 04:56:49,220 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140335075317568)>', '<ExcThread(monitor, started 140334340228864)>']
[2025-12-02 23:56:54] 2025-12-03 04:56:49,526 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 23:56:54] 2025-12-03 04:56:49,526 | INFO     | [monitor] control thread has ended
[2025-12-02 23:56:54] 2025-12-03 04:56:54,221 | INFO     | all workflow threads have been joined
[2025-12-02 23:56:54] 2025-12-03 04:56:54,222 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 23:56:54] 2025-12-03 04:56:54,222 | INFO     | traces error code: 0
[2025-12-02 23:56:54] 2025-12-03 04:56:54,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 23:56:54] 2025-12-03 04:56:54,279 [wrapper] ==== pilot stdout END ====
[2025-12-02 23:56:54] 2025-12-03 04:56:54,283 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 23:56:54] 2025-12-03 04:56:54,287 [wrapper] pilotpid: 634930
[2025-12-02 23:56:54] 2025-12-03 04:56:54,291 [wrapper] Pilot exit status: 0
[2025-12-02 23:56:54] 2025-12-03 04:56:54,304 [wrapper] pandaids: 6895329430
[2025-12-02 23:56:54] 2025-12-03 04:56:54,324 [wrapper] cleanup supervisor_pilot  660402 634931
[2025-12-02 23:56:54] 2025-12-03 04:56:54,328 [wrapper] Test setup, not cleaning
[2025-12-02 23:56:54] 2025-12-03 04:56:54,332 [wrapper] apfmon messages muted
[2025-12-02 23:56:54] 2025-12-03 04:56:54,335 [wrapper] ==== wrapper stdout END ====
[2025-12-02 23:56:54] 2025-12-03 04:56:54,337 [wrapper] ==== wrapper stderr END ====
[2025-12-02 23:56:54]  *** Error codes and diagnostics ***
[2025-12-02 23:56:54]     "exeErrorCode": 0,
[2025-12-02 23:56:54]     "exeErrorDiag": "",
[2025-12-02 23:56:54]     "pilotErrorCode": 0,
[2025-12-02 23:56:54]     "pilotErrorDiag": "",
[2025-12-02 23:56:54]  *** Listing of results directory ***
[2025-12-02 23:56:54] total 1302552
[2025-12-02 23:56:54] -rw-r--r-- 1 root root    576529 Nov 21 14:29 pilot3.tar.gz
[2025-12-02 23:56:54] -rw-r--r-- 1 root root      5112 Nov 21 14:31 queuedata.json
[2025-12-02 23:56:54] -rwx------ 1 4871 1028     36292 Nov 21 14:32 runpilot2-wrapper.sh
[2025-12-02 23:56:54] -rw-r--r-- 1 root root       100 Dec  2 21:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 23:56:54] -rwxr-xr-x 1 root root      7986 Dec  2 21:27 run_atlas
[2025-12-02 23:56:54] -rw-r--r-- 1 root root       105 Dec  2 21:27 job.xml
[2025-12-02 23:56:54] -rw-r--r-- 2 root root 408514910 Dec  2 21:27 EVNT.47483658._000119.pool.root.1
[2025-12-02 23:56:54] drwxrwx--x 2 root root      4096 Dec  2 21:27 shared
[2025-12-02 23:56:54] -rw-r--r-- 2 root root    590101 Dec  2 21:27 input.tar.gz
[2025-12-02 23:56:54] -rw-r--r-- 2 root root     15847 Dec  2 21:27 start_atlas.sh
[2025-12-02 23:56:54] -rw-r--r-- 1 root root         0 Dec  2 21:27 boinc_lockfile
[2025-12-02 23:56:54] -rw-r--r-- 1 root root      2786 Dec  2 21:28 pandaJob.out
[2025-12-02 23:56:54] -rw-r--r-- 1 root root      9322 Dec  2 21:29 init_data.xml
[2025-12-02 23:56:54] -rw------- 1 root root    989292 Dec  2 21:30 agis_schedconf.cvmfs.json
[2025-12-02 23:56:54] -rw------- 1 root root   1516240 Dec  2 21:30 agis_ddmendpoints.agis.ALL.json
[2025-12-02 23:56:54] drwxr-xr-x 5  320  320      4096 Dec  2 21:30 pilot3
[2025-12-02 23:56:54] -rw-r--r-- 1 root root       530 Dec  2 23:50 boinc_task_state.xml
[2025-12-02 23:56:54] -rw------- 1 root root 915168451 Dec  2 23:54 HITS.47556137._001185.pool.root.1
[2025-12-02 23:56:54] -rw------- 1 root root      1036 Dec  2 23:54 memory_monitor_summary.json
[2025-12-02 23:56:54] -rw------- 1 root root   1881826 Dec  2 23:54 log.47556137._001185.job.log.tgz.1
[2025-12-02 23:56:54] -rw------- 1 root root      8589 Dec  2 23:56 heartbeat.json
[2025-12-02 23:56:54] -rw-r--r-- 1 root root      8192 Dec  2 23:56 boinc_mmap_file
[2025-12-02 23:56:54] -rw-r--r-- 1 root root        27 Dec  2 23:56 wrapper_checkpoint.txt
[2025-12-02 23:56:54] -rw------- 1 root root        95 Dec  2 23:56 pilot_heartbeat.json
[2025-12-02 23:56:54] -rw------- 1 root root      4827 Dec  2 23:56 pilotlog.txt
[2025-12-02 23:56:54] -rw------- 1 root root   1221379 Dec  2 23:56 log.47556137._001185.job.log.1
[2025-12-02 23:56:54] -rw------- 1 root root       353 Dec  2 23:56 output.list
[2025-12-02 23:56:54] -rw-r--r-- 1 root root       620 Dec  2 23:56 runtime_log
[2025-12-02 23:56:54] -rw------- 1 root root   3123200 Dec  2 23:56 result.tar.gz
[2025-12-02 23:56:54] -rw-r--r-- 1 root root      8861 Dec  2 23:56 runtime_log.err
[2025-12-02 23:56:54] -rw------- 1 root root       646 Dec  2 23:56 DZWNDmq2lg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMgJKDmF4l34m.diag
[2025-12-02 23:56:54] -rw-r--r-- 1 root root     21488 Dec  2 23:56 stderr.txt
[2025-12-02 23:56:54] HITS file was successfully produced:
[2025-12-02 23:56:54] -rw------- 1 root root 915168451 Dec  2 23:54 shared/HITS.pool.root.1
[2025-12-02 23:56:54]  *** Contents of shared directory: ***
[2025-12-02 23:56:54] total 1296320
[2025-12-02 23:56:54] -rw-r--r-- 2 root root 408514910 Dec  2 21:27 ATLAS.root_0
[2025-12-02 23:56:54] -rw-r--r-- 2 root root    590101 Dec  2 21:27 input.tar.gz
[2025-12-02 23:56:54] -rw-r--r-- 2 root root     15847 Dec  2 21:27 start_atlas.sh
[2025-12-02 23:56:54] -rw------- 1 root root 915168451 Dec  2 23:54 HITS.pool.root.1
[2025-12-02 23:56:54] -rw------- 1 root root   3123200 Dec  2 23:56 result.tar.gz
23:56:55 (630834): run_atlas exited; CPU time 60682.721607
23:56:55 (630834): called boinc_finish(0)

</stderr_txt>
]]>

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