Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:51:51 (1231071): wrapper (7.7.26015): starting
04:51:51 (1231071): wrapper: running run_atlas (--nthreads 3)
[2025-12-05 04:51:51] Arguments: --nthreads 3
[2025-12-05 04:51:51] Threads: 3
[2025-12-05 04:51:51] Checking for CVMFS
[2025-12-05 04:51:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-05 04:51:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-05 04:51:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-05 04:51:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-05 04:51:51] 2.9.2.0 2027077 15609 106688 153639 2 90 21084939 36864000 0 130560 0 5835163 99.982 545791 889 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-05 04:51:51] CVMFS is ok
[2025-12-05 04:51:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-05 04:51:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-05 04:51:51] Further information can be found at the LHC@home message board.
[2025-12-05 04:51:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-05 04:51:51] Checking for apptainer binary...
[2025-12-05 04:51:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-05 04:51:51] Running /usr/bin/apptainer --version
[2025-12-05 04:51:51] apptainer version 1.4.1-1.1
[2025-12-05 04:51:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-05 04:51:51] legendA163
[2025-12-05 04:51:51] apptainer works
[2025-12-05 04:51:51] Set ATHENA_PROC_NUMBER=3
[2025-12-05 04:51:51] Set ATHENA_CORE_NUMBER=3
[2025-12-05 04:51:51] Starting ATLAS job with PandaID=6900296144
[2025-12-05 04:51:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 11:43:33]  *** The last 200 lines of the pilot log: ***
[2025-12-05 11:43:33] 2025-12-05 10:42:42,250 | INFO     | monitor loop #1876: job 0:6900296144 is in state 'finished'
[2025-12-05 11:43:33] 2025-12-05 10:42:42,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 11:43:33] 2025-12-05 10:42:42,910 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-05 11:43:33] 2025-12-05 10:42:42,911 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3554.488416666667
[2025-12-05 11:43:33] 2025-12-05 10:42:42,912 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6900296144/memory_monitor_summary.json (trf name=prmon)
[2025-12-05 11:43:33] 2025-12-05 10:42:42,913 | INFO     | extracted standard info from prmon json
[2025-12-05 11:43:33] 2025-12-05 10:42:42,913 | INFO     | extracted standard memory fields from prmon json
[2025-12-05 11:43:33] 2025-12-05 10:42:42,913 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-05 11:43:33] 2025-12-05 10:42:42,915 | INFO     | fitting pss+swap vs Time
[2025-12-05 11:43:33] 2025-12-05 10:42:42,916 | INFO     | sum of square deviations: 20446541505.0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,917 | INFO     | sum of deviations: 115792546669.99998
[2025-12-05 11:43:33] 2025-12-05 10:42:42,917 | INFO     | mean x: 1764919029.5
[2025-12-05 11:43:33] 2025-12-05 10:42:42,917 | INFO     | mean y: 2631226.108910891
[2025-12-05 11:43:33] 2025-12-05 10:42:42,917 | INFO     | intersect: -9992431706.278677
[2025-12-05 11:43:33] 2025-12-05 10:42:42,917 | INFO     | chi2: 4.168212333323023
[2025-12-05 11:43:33] 2025-12-05 10:42:42,917 | INFO     | sum of square deviations: 19696741400.0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,919 | INFO     | sum of deviations: 166087883285.0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,919 | INFO     | mean x: 1764918877.0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,919 | INFO     | mean y: 2641386.1779448623
[2025-12-05 11:43:33] 2025-12-05 10:42:42,919 | INFO     | intersect: -14879599005.660133
[2025-12-05 11:43:33] 2025-12-05 10:42:42,919 | INFO     | chi2: 3.11804900145589
[2025-12-05 11:43:33] 2025-12-05 10:42:42,919 | INFO     | current chi2=3.11804900145589 (change=25.19457378578196 %)
[2025-12-05 11:43:33] 2025-12-05 10:42:42,919 | INFO     | sum of square deviations: 18965499782.5
[2025-12-05 11:43:33] 2025-12-05 10:42:42,920 | INFO     | sum of deviations: 163592372065.0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,920 | INFO     | mean x: 1764918724.5
[2025-12-05 11:43:33] 2025-12-05 10:42:42,920 | INFO     | mean y: 2640865.6954314723
[2025-12-05 11:43:33] 2025-12-05 10:42:42,921 | INFO     | intersect: -15221173109.895445
[2025-12-05 11:43:33] 2025-12-05 10:42:42,921 | INFO     | chi2: 3.1181015877033005
[2025-12-05 11:43:33] 2025-12-05 10:42:42,921 | INFO     | current chi2=3.1181015877033005 (change=-0.0016865112570643318 %)
[2025-12-05 11:43:33] 2025-12-05 10:42:42,921 | INFO     | right removable region: 393
[2025-12-05 11:43:33] 2025-12-05 10:42:42,921 | INFO     | sum of square deviations: 19696741400.0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,922 | INFO     | sum of deviations: 2791906133.000004
[2025-12-05 11:43:33] 2025-12-05 10:42:42,922 | INFO     | mean x: 1764919182.0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,922 | INFO     | mean y: 2654179.3458646615
[2025-12-05 11:43:33] 2025-12-05 10:42:42,922 | INFO     | intersect: -247513530.55132422
[2025-12-05 11:43:33] 2025-12-05 10:42:42,922 | INFO     | chi2: 1.5661931706652616
[2025-12-05 11:43:33] 2025-12-05 10:42:42,922 | INFO     | current chi2=1.5661931706652616 (change=62.42530261368317 %)
[2025-12-05 11:43:33] 2025-12-05 10:42:42,923 | INFO     | sum of square deviations: 18965499782.5
[2025-12-05 11:43:33] 2025-12-05 10:42:42,924 | INFO     | sum of deviations: -27044732408.999992
[2025-12-05 11:43:33] 2025-12-05 10:42:42,924 | INFO     | mean x: 1764919334.5
[2025-12-05 11:43:33] 2025-12-05 10:42:42,924 | INFO     | mean y: 2660365.8172588833
[2025-12-05 11:43:33] 2025-12-05 10:42:42,924 | INFO     | intersect: 2519428796.5161586
[2025-12-05 11:43:33] 2025-12-05 10:42:42,924 | INFO     | chi2: 1.206415181943264
[2025-12-05 11:43:33] 2025-12-05 10:42:42,924 | INFO     | current chi2=1.206415181943264 (change=22.97149518083884 %)
[2025-12-05 11:43:33] 2025-12-05 10:42:42,924 | INFO     | left removable region: 20
[2025-12-05 11:43:33] 2025-12-05 10:42:42,924 | INFO     | sum of square deviations: 16091695202.0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,925 | INFO     | sum of deviations: 5810146788.000009
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | mean x: 1764919304.0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | mean y: 2674924.6273458446
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | intersect: -634575538.825399
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | chi2: 0.11418046400922593
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | current memory leak: 0.36 B/s (using 373 data points, chi2=0.11)
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | could have reported an average CPU frequency of 3896 MHz (17 samples)
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | ..............................
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | . Timing measurements:
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | . get job = 0 s
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | . initial setup = 1 s
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | . payload setup = 4 s
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | . stage-in = 0 s
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | . payload execution = 24615 s
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | . stage-out = 0 s
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | . log creation = 0 s
[2025-12-05 11:43:33] 2025-12-05 10:42:42,926 | INFO     | ..............................
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | 
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | job summary report
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | --------------------------------------------------
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | PanDA job id: 6900296144
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | task id: 47530783
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | errors: (none)
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | pilot state: finished 
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | transexitcode: 0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | exeerrorcode: 0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | exeerrordiag: 
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | exitcode: 0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | exitmsg: OK
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | cpuconsumptiontime: 72561 s
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | nevents: 1000
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | neventsw: 0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | pid: 1241909
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | pgrp: 1241909
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | corecount: 3
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | event service: False
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | sizes: {0: 2284452, 3: 2284714, 11: 2284742, 24624: 2340245, 24625: 2349245, 24629: 2349301, 24633: 2349739}
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | --------------------------------------------------
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | 
[2025-12-05 11:43:33] 2025-12-05 10:42:42,957 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,970 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,971 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-05 11:43:33] 2025-12-05 10:42:42,971 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,971 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-05 11:43:33] 2025-12-05 10:42:42,971 | INFO     | job 6900296144 has completed (purged errors)
[2025-12-05 11:43:33] 2025-12-05 10:42:42,971 | INFO     | overall cleanup function is called
[2025-12-05 11:43:33] 2025-12-05 10:42:43,975 | INFO     | --- collectZombieJob: --- 10, [1241909]
[2025-12-05 11:43:33] 2025-12-05 10:42:43,975 | INFO     | zombie collector waiting for pid 1241909
[2025-12-05 11:43:33] 2025-12-05 10:42:43,975 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-05 11:43:33] 2025-12-05 10:42:43,976 | INFO     | collected zombie processes
[2025-12-05 11:43:33] 2025-12-05 10:42:43,976 | INFO     | will attempt to kill all subprocesses of pid=1241909
[2025-12-05 11:43:33] 2025-12-05 10:42:44,033 | INFO     | process IDs to be killed: [1241909] (in reverse order)
[2025-12-05 11:43:33] 2025-12-05 10:42:44,062 | WARNING  | found no corresponding commands to process id(s)
[2025-12-05 11:43:33] 2025-12-05 10:42:44,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-05 11:43:33] 2025-12-05 10:42:44,064 | INFO     | did not find any defunct processes belonging to 1241909
[2025-12-05 11:43:33] 2025-12-05 10:42:44,066 | INFO     | did not find any defunct processes belonging to 1241909
[2025-12-05 11:43:33] 2025-12-05 10:42:44,066 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-05 11:43:33] 2025-12-05 10:42:44,066 | INFO     | ready for new job
[2025-12-05 11:43:33] 2025-12-05 10:42:44,067 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-05 11:43:33] 2025-12-05 10:42:44,068 | INFO     | ***************************************
[2025-12-05 11:43:33] 2025-12-05 10:42:44,068 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-05 11:43:33] 2025-12-05 10:42:44,068 | INFO     | ***************************************
[2025-12-05 11:43:33] 2025-12-05 10:42:44,068 | INFO     | 
[2025-12-05 11:43:33] 2025-12-05 10:42:44,068 | INFO     | architecture information:
[2025-12-05 11:43:33] 2025-12-05 10:42:44,068 | INFO     | executing command: cat /etc/os-release
[2025-12-05 11:43:33] 2025-12-05 10:42:44,077 | INFO     | cat /etc/os-release:
[2025-12-05 11:43:33] NAME="CentOS Linux"
[2025-12-05 11:43:33] VERSION="7 (Core)"
[2025-12-05 11:43:33] ID="centos"
[2025-12-05 11:43:33] ID_LIKE="rhel fedora"
[2025-12-05 11:43:33] VERSION_ID="7"
[2025-12-05 11:43:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 11:43:33] ANSI_COLOR="0;31"
[2025-12-05 11:43:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 11:43:33] HOME_URL="https://www.centos.org/"
[2025-12-05 11:43:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 11:43:33] 
[2025-12-05 11:43:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 11:43:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 11:43:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 11:43:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 11:43:33] 
[2025-12-05 11:43:33] 2025-12-05 10:42:44,077 | INFO     | ***************************************
[2025-12-05 11:43:33] 2025-12-05 10:42:44,580 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-05 11:43:33] 2025-12-05 10:42:44,592 | INFO     | sufficient remaining disk space (384258015232 B)
[2025-12-05 11:43:33] 2025-12-05 10:42:44,592 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 11:43:33] 2025-12-05 10:42:44,592 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 11:43:33] 2025-12-05 10:42:44,593 | INFO     | update_server=False
[2025-12-05 11:43:33] 2025-12-05 10:42:44,593 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 11:43:33] 2025-12-05 10:42:44,593 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 11:43:33] 2025-12-05 10:42:44,712 | INFO     | all payload control threads have been joined
[2025-12-05 11:43:33] 2025-12-05 10:42:44,752 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-05 11:43:33] 2025-12-05 10:42:44,752 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-05 11:43:33] 2025-12-05 10:42:44,752 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 11:43:33] 2025-12-05 10:42:44,753 | INFO     | will abort loop
[2025-12-05 11:43:33] 2025-12-05 10:42:44,852 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 11:43:33] 2025-12-05 10:42:45,162 | INFO     | all data control threads have been joined
[2025-12-05 11:43:33] 2025-12-05 10:42:45,598 | INFO     | [job] queue monitor thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:45,598 | INFO     | [job] retrieve thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:45,717 | INFO     | [payload] control thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:45,758 | INFO     | [job] job monitor thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:45,865 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 11:43:33] 2025-12-05 10:42:45,982 | INFO     | [payload] validate_post thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:46,008 | INFO     | [data] copytool_in thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:46,168 | INFO     | [data] control thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:46,207 | INFO     | all job control threads have been joined
[2025-12-05 11:43:33] 2025-12-05 10:42:46,383 | INFO     | [job] validate thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:46,428 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:46,503 | INFO     | [payload] failed_post thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:46,550 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:46,753 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:46,797 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:47,213 | INFO     | [job] control thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:47,871 | INFO     | [data] copytool_out thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:42:48,856 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 11:43:33] 2025-12-05 10:43:14,202 | INFO     | PID=1234793 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-05 11:43:33] 2025-12-05 10:43:14,202 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 11:43:33] 2025-12-05 10:43:14,202 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 11:43:33] 2025-12-05 10:43:14,202 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 11:43:33] 2025-12-05 10:43:26,167 | INFO     | [monitor] cgroup control has ended
[2025-12-05 11:43:33] 2025-12-05 10:43:28,146 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140271316240192)>', '<ExcThread(monitor, started 140270964283136)>']
[2025-12-05 11:43:33] 2025-12-05 10:43:28,273 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 11:43:33] 2025-12-05 10:43:28,273 | INFO     | [monitor] control thread has ended
[2025-12-05 11:43:33] 2025-12-05 10:43:33,172 | INFO     | all workflow threads have been joined
[2025-12-05 11:43:33] 2025-12-05 10:43:33,172 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 11:43:33] 2025-12-05 10:43:33,172 | INFO     | traces error code: 0
[2025-12-05 11:43:33] 2025-12-05 10:43:33,172 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 11:43:33] 2025-12-05 10:43:33,224 [wrapper] ==== pilot stdout END ====
[2025-12-05 11:43:33] 2025-12-05 10:43:33,227 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 11:43:33] 2025-12-05 10:43:33,229 [wrapper] pilotpid: 1234793
[2025-12-05 11:43:33] 2025-12-05 10:43:33,232 [wrapper] Pilot exit status: 0
[2025-12-05 11:43:33] 2025-12-05 10:43:33,239 [wrapper] pandaids: 6900296144
[2025-12-05 11:43:33] 2025-12-05 10:43:33,259 [wrapper] cleanup supervisor_pilot 1305514 1234794
[2025-12-05 11:43:33] 2025-12-05 10:43:33,261 [wrapper] Test setup, not cleaning
[2025-12-05 11:43:33] 2025-12-05 10:43:33,263 [wrapper] apfmon messages muted
[2025-12-05 11:43:33] 2025-12-05 10:43:33,266 [wrapper] ==== wrapper stdout END ====
[2025-12-05 11:43:33] 2025-12-05 10:43:33,268 [wrapper] ==== wrapper stderr END ====
[2025-12-05 11:43:33]  *** Error codes and diagnostics ***
[2025-12-05 11:43:33]     "exeErrorCode": 0,
[2025-12-05 11:43:33]     "exeErrorDiag": "",
[2025-12-05 11:43:33]     "pilotErrorCode": 0,
[2025-12-05 11:43:33]     "pilotErrorDiag": "",
[2025-12-05 11:43:33]  *** Listing of results directory ***
[2025-12-05 11:43:33] total 1063832
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-05 11:43:33] -rwx------ 1 boinc boinc     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc      5112 Nov 29 10:25 queuedata.json
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc       100 Dec  5 04:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 11:43:33] -rwxr-xr-x 1 boinc boinc      7986 Dec  5 04:51 run_atlas
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc       105 Dec  5 04:51 job.xml
[2025-12-05 11:43:33] -rw-r--r-- 2 boinc boinc 376609121 Dec  5 04:51 EVNT.47530775._000055.pool.root.1
[2025-12-05 11:43:33] -rw-r--r-- 2 boinc boinc    590123 Dec  5 04:51 input.tar.gz
[2025-12-05 11:43:33] -rw-r--r-- 2 boinc boinc     15847 Dec  5 04:51 start_atlas.sh
[2025-12-05 11:43:33] drwxrwx--x 2 boinc boinc      4096 Dec  5 04:51 shared
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc         0 Dec  5 04:51 boinc_setup_complete
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc      6451 Dec  5 04:51 init_data.xml
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc         0 Dec  5 04:51 boinc_lockfile
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc      2878 Dec  5 04:51 pandaJob.out
[2025-12-05 11:43:33] -rw------- 1 boinc boinc    985572 Dec  5 04:51 agis_schedconf.cvmfs.json
[2025-12-05 11:43:33] drwx------ 5 boinc boinc      4096 Dec  5 04:51 pilot3
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc       531 Dec  5 11:39 boinc_task_state.xml
[2025-12-05 11:43:33] -rw------- 1 boinc boinc        95 Dec  5 11:42 pilot_heartbeat.json
[2025-12-05 11:43:33] -rw------- 1 boinc boinc 699443846 Dec  5 11:42 HITS.47530783._000549.pool.root.1
[2025-12-05 11:43:33] -rw------- 1 boinc boinc      1025 Dec  5 11:42 memory_monitor_summary.json
[2025-12-05 11:43:33] -rw------- 1 boinc boinc   1516240 Dec  5 11:42 agis_ddmendpoints.agis.ALL.json
[2025-12-05 11:43:33] -rw------- 1 boinc boinc   1208949 Dec  5 11:42 log.47530783._000549.job.log.tgz.1
[2025-12-05 11:43:33] -rw------- 1 boinc boinc     27465 Dec  5 11:42 heartbeat.json
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc      8192 Dec  5 11:43 boinc_mmap_file
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc        28 Dec  5 11:43 wrapper_checkpoint.txt
[2025-12-05 11:43:33] -rw------- 1 boinc boinc      4938 Dec  5 11:43 pilotlog.txt
[2025-12-05 11:43:33] -rw------- 1 boinc boinc   3471818 Dec  5 11:43 log.47530783._000549.job.log.1
[2025-12-05 11:43:33] -rw------- 1 boinc boinc       353 Dec  5 11:43 output.list
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc       620 Dec  5 11:43 runtime_log
[2025-12-05 11:43:33] -rw------- 1 boinc boinc   4720640 Dec  5 11:43 result.tar.gz
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc      8918 Dec  5 11:43 runtime_log.err
[2025-12-05 11:43:33] -rw------- 1 boinc boinc       669 Dec  5 11:43 YpDMDmvKWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm87OKDmgiiyQm.diag
[2025-12-05 11:43:33] -rw-r--r-- 1 boinc boinc     21256 Dec  5 11:43 stderr.txt
[2025-12-05 11:43:33] HITS file was successfully produced:
[2025-12-05 11:43:33] -rw------- 1 boinc boinc 699443846 Dec  5 11:42 shared/HITS.pool.root.1
[2025-12-05 11:43:33]  *** Contents of shared directory: ***
[2025-12-05 11:43:33] total 1056052
[2025-12-05 11:43:33] -rw-r--r-- 2 boinc boinc 376609121 Dec  5 04:51 ATLAS.root_0
[2025-12-05 11:43:33] -rw-r--r-- 2 boinc boinc    590123 Dec  5 04:51 input.tar.gz
[2025-12-05 11:43:33] -rw-r--r-- 2 boinc boinc     15847 Dec  5 04:51 start_atlas.sh
[2025-12-05 11:43:33] -rw------- 1 boinc boinc 699443846 Dec  5 11:42 HITS.pool.root.1
[2025-12-05 11:43:33] -rw------- 1 boinc boinc   4720640 Dec  5 11:43 result.tar.gz
11:43:34 (1231071): run_atlas exited; CPU time 72632.689581
11:43:34 (1231071): called boinc_finish(0)

</stderr_txt>
]]>

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