Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:21:33 (17926): wrapper (7.7.26015): starting
17:21:33 (17926): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 17:21:33] Arguments: --nthreads 8
[2025-12-02 17:21:33] Threads: 8
[2025-12-02 17:21:33] Checking for CVMFS
[2025-12-02 17:21:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 17:21:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 17:21:34] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 17:21:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 17:21:34] 2.11.0.0 4025 74152 99276 153562 0 76 2442938 4096001 4180 130560 1 8570415 99.464 8085959 704 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 17:21:34] CVMFS is ok
[2025-12-02 17:21:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 17:21:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 17:21:34] Further information can be found at the LHC@home message board.
[2025-12-02 17:21:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 17:21:34] Checking for apptainer binary...
[2025-12-02 17:21:34] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 17:21:34] apptainer is not installed, using version from CVMFS
[2025-12-02 17:21:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 17:21:34] WARNING: Environment variable TMPDIR already has value [/tmp/job_10943950/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node106
[2025-12-02 17:21:34] apptainer works
[2025-12-02 17:21:34] Set ATHENA_PROC_NUMBER=8
[2025-12-02 17:21:34] Set ATHENA_CORE_NUMBER=8
[2025-12-02 17:21:34] Starting ATLAS job with PandaID=6897834146
[2025-12-02 17:21:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10943950/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 21:08:20]  *** The last 200 lines of the pilot log: ***
[2025-12-02 21:08:20] 2025-12-02 20:07:46,418 | INFO     | .. there are 3 such processes running
[2025-12-02 21:08:20] 2025-12-02 20:07:46,439 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-02 21:08:20] 2025-12-02 20:07:47,419 | INFO     | time since job start (13568s) is within the limit (172800.0s)
[2025-12-02 21:08:20] 2025-12-02 20:07:48,269 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 21:08:20] 2025-12-02 20:07:48,274 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2396.161375
[2025-12-02 21:08:20] 2025-12-02 20:07:48,279 | INFO     | using path: /tmp/job_10943950/atlas/pilot/slots/0/PanDA_Pilot-6897834146/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 21:08:20] 2025-12-02 20:07:48,279 | INFO     | extracted standard info from prmon json
[2025-12-02 21:08:20] 2025-12-02 20:07:48,279 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 21:08:20] 2025-12-02 20:07:48,279 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 21:08:20] 2025-12-02 20:07:48,281 | INFO     | fitting pss+swap vs Time
[2025-12-02 21:08:20] 2025-12-02 20:07:48,282 | INFO     | sum of square deviations: 3438620752.0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,282 | INFO     | sum of deviations: 81579220469.99998
[2025-12-02 21:08:20] 2025-12-02 20:07:48,282 | INFO     | mean x: 1764699289.0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,282 | INFO     | mean y: 3372450.524663677
[2025-12-02 21:08:20] 2025-12-02 20:07:48,283 | INFO     | intersect: -41863062595.227425
[2025-12-02 21:08:20] 2025-12-02 20:07:48,283 | INFO     | chi2: 3.674477049970324
[2025-12-02 21:08:20] 2025-12-02 20:07:48,283 | INFO     | sum of square deviations: 3212467674.5
[2025-12-02 21:08:20] 2025-12-02 20:07:48,284 | INFO     | sum of deviations: 140265058986.5
[2025-12-02 21:08:20] 2025-12-02 20:07:48,284 | INFO     | mean x: 1764699136.5
[2025-12-02 21:08:20] 2025-12-02 20:07:48,284 | INFO     | mean y: 3411736.8853211007
[2025-12-02 21:08:20] 2025-12-02 20:07:48,284 | INFO     | intersect: -77048142879.34094
[2025-12-02 21:08:20] 2025-12-02 20:07:48,284 | INFO     | chi2: 1.776084243218988
[2025-12-02 21:08:20] 2025-12-02 20:07:48,284 | INFO     | current chi2=1.776084243218988 (change=51.6642989174927 %)
[2025-12-02 21:08:20] 2025-12-02 20:07:48,284 | INFO     | sum of square deviations: 2996454322.0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,285 | INFO     | sum of deviations: 134570286287.0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,285 | INFO     | mean x: 1764698984.0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,285 | INFO     | mean y: 3407716.0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,285 | INFO     | intersect: -79248942551.34976
[2025-12-02 21:08:20] 2025-12-02 20:07:48,285 | INFO     | chi2: 1.7750670265823756
[2025-12-02 21:08:20] 2025-12-02 20:07:48,285 | INFO     | current chi2=1.7750670265823756 (change=0.05727299481970864 %)
[2025-12-02 21:08:20] 2025-12-02 20:07:48,285 | INFO     | right removable region: 212
[2025-12-02 21:08:20] 2025-12-02 20:07:48,285 | INFO     | sum of square deviations: 3212467674.5
[2025-12-02 21:08:20] 2025-12-02 20:07:48,286 | INFO     | sum of deviations: 25619195409.999996
[2025-12-02 21:08:20] 2025-12-02 20:07:48,286 | INFO     | mean x: 1764699441.5
[2025-12-02 21:08:20] 2025-12-02 20:07:48,286 | INFO     | mean y: 3409862.2844036696
[2025-12-02 21:08:20] 2025-12-02 20:07:48,286 | INFO     | intersect: -14069939479.275286
[2025-12-02 21:08:20] 2025-12-02 20:07:48,286 | INFO     | chi2: 1.96123414381546
[2025-12-02 21:08:20] 2025-12-02 20:07:48,286 | INFO     | current chi2=1.96123414381546 (change=46.62548936504313 %)
[2025-12-02 21:08:20] 2025-12-02 20:07:48,286 | INFO     | sum of square deviations: 2996454322.0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,287 | INFO     | sum of deviations: 16148658526.999966
[2025-12-02 21:08:20] 2025-12-02 20:07:48,287 | INFO     | mean x: 1764699594.0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,287 | INFO     | mean y: 3416540.1830985914
[2025-12-02 21:08:20] 2025-12-02 20:07:48,287 | INFO     | intersect: -9507000801.076635
[2025-12-02 21:08:20] 2025-12-02 20:07:48,287 | INFO     | chi2: 1.9464610947915015
[2025-12-02 21:08:20] 2025-12-02 20:07:48,287 | INFO     | current chi2=1.9464610947915015 (change=0.7532526940010497 %)
[2025-12-02 21:08:20] 2025-12-02 20:07:48,288 | INFO     | left removable region: 20
[2025-12-02 21:08:20] 2025-12-02 20:07:48,288 | INFO     | sum of square deviations: 2194675568.0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,288 | INFO     | sum of deviations: 54283107304.99998
[2025-12-02 21:08:20] 2025-12-02 20:07:48,288 | INFO     | mean x: 1764699563.5
[2025-12-02 21:08:20] 2025-12-02 20:07:48,288 | INFO     | mean y: 3467515.1041666665
[2025-12-02 21:08:20] 2025-12-02 20:07:48,288 | INFO     | intersect: -43644612940.74803
[2025-12-02 21:08:20] 2025-12-02 20:07:48,289 | INFO     | chi2: 0.005655793419480454
[2025-12-02 21:08:20] 2025-12-02 20:07:48,289 | INFO     | current memory leak: 24.73 B/s (using 192 data points, chi2=0.01)
[2025-12-02 21:08:20] 2025-12-02 20:07:48,289 | INFO     | could have reported an average CPU frequency of 2896 MHz (11 samples)
[2025-12-02 21:08:20] 2025-12-02 20:07:48,289 | INFO     | ..............................
[2025-12-02 21:08:20] 2025-12-02 20:07:48,289 | INFO     | . Timing measurements:
[2025-12-02 21:08:20] 2025-12-02 20:07:48,289 | INFO     | . get job = 0 s
[2025-12-02 21:08:20] 2025-12-02 20:07:48,289 | INFO     | . initial setup = 1 s
[2025-12-02 21:08:20] 2025-12-02 20:07:48,289 | INFO     | . payload setup = 3 s
[2025-12-02 21:08:20] 2025-12-02 20:07:48,289 | INFO     | . stage-in = 0 s
[2025-12-02 21:08:20] 2025-12-02 20:07:48,289 | INFO     | . payload execution = 13545 s
[2025-12-02 21:08:20] 2025-12-02 20:07:48,289 | INFO     | . stage-out = 1 s
[2025-12-02 21:08:20] 2025-12-02 20:07:48,289 | INFO     | . log creation = 0 s
[2025-12-02 21:08:20] 2025-12-02 20:07:48,289 | INFO     | ..............................
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | 
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | job summary report
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | --------------------------------------------------
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | PanDA job id: 6897834146
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | task id: 47531058
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | errors: (none)
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | pilot state: finished 
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | transexitcode: 0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | exeerrorcode: 0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | exeerrordiag: 
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | exitcode: 0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | exitmsg: OK
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | cpuconsumptiontime: 102631 s
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | nevents: 1000
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | neventsw: 0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | pid: 29062
[2025-12-02 21:08:20] 2025-12-02 20:07:48,427 | INFO     | pgrp: 29062
[2025-12-02 21:08:20] 2025-12-02 20:07:48,428 | INFO     | corecount: 8
[2025-12-02 21:08:20] 2025-12-02 20:07:48,428 | INFO     | event service: False
[2025-12-02 21:08:20] 2025-12-02 20:07:48,428 | INFO     | sizes: {0: 2284294, 1: 2284604, 2: 2284866, 11: 2284894, 13552: 2335437, 13553: 2335436, 13554: 2344700, 13556: 2344890}
[2025-12-02 21:08:20] 2025-12-02 20:07:48,428 | INFO     | --------------------------------------------------
[2025-12-02 21:08:20] 2025-12-02 20:07:48,428 | INFO     | 
[2025-12-02 21:08:20] 2025-12-02 20:07:48,428 | INFO     | executing command: ls -lF /tmp/job_10943950/atlas/pilot/slots/0
[2025-12-02 21:08:20] 2025-12-02 20:07:48,437 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,437 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,437 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,437 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,437 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,437 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,437 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,437 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,437 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,437 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,437 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,437 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,438 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,438 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,438 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,438 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,438 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,438 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 21:08:20] 2025-12-02 20:07:48,438 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,438 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 21:08:20] 2025-12-02 20:07:48,438 | INFO     | job 6897834146 has completed (purged errors)
[2025-12-02 21:08:20] 2025-12-02 20:07:48,438 | INFO     | overall cleanup function is called
[2025-12-02 21:08:20] 2025-12-02 20:07:49,446 | INFO     | --- collectZombieJob: --- 10, [29062]
[2025-12-02 21:08:20] 2025-12-02 20:07:49,446 | INFO     | zombie collector waiting for pid 29062
[2025-12-02 21:08:20] 2025-12-02 20:07:49,446 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 21:08:20] 2025-12-02 20:07:49,446 | INFO     | collected zombie processes
[2025-12-02 21:08:20] 2025-12-02 20:07:49,446 | INFO     | will attempt to kill all subprocesses of pid=29062
[2025-12-02 21:08:20] 2025-12-02 20:07:49,545 | INFO     | process IDs to be killed: [29062] (in reverse order)
[2025-12-02 21:08:20] 2025-12-02 20:07:49,580 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 21:08:20] 2025-12-02 20:07:49,580 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 21:08:20] 2025-12-02 20:07:49,584 | INFO     | did not find any defunct processes belonging to 29062
[2025-12-02 21:08:20] 2025-12-02 20:07:49,587 | INFO     | did not find any defunct processes belonging to 29062
[2025-12-02 21:08:20] 2025-12-02 20:07:49,587 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 21:08:20] 2025-12-02 20:07:49,587 | INFO     | ready for new job
[2025-12-02 21:08:20] 2025-12-02 20:07:49,587 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 21:08:20] 2025-12-02 20:07:49,588 | INFO     | ***************************************
[2025-12-02 21:08:20] 2025-12-02 20:07:49,588 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 21:08:20] 2025-12-02 20:07:49,588 | INFO     | ***************************************
[2025-12-02 21:08:20] 2025-12-02 20:07:49,588 | INFO     | 
[2025-12-02 21:08:20] 2025-12-02 20:07:49,602 | INFO     | architecture information:
[2025-12-02 21:08:20] 2025-12-02 20:07:49,602 | INFO     | executing command: cat /etc/os-release
[2025-12-02 21:08:20] 2025-12-02 20:07:49,609 | INFO     | cat /etc/os-release:
[2025-12-02 21:08:20] NAME="CentOS Linux"
[2025-12-02 21:08:20] VERSION="7 (Core)"
[2025-12-02 21:08:20] ID="centos"
[2025-12-02 21:08:20] ID_LIKE="rhel fedora"
[2025-12-02 21:08:20] VERSION_ID="7"
[2025-12-02 21:08:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 21:08:20] ANSI_COLOR="0;31"
[2025-12-02 21:08:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 21:08:20] HOME_URL="https://www.centos.org/"
[2025-12-02 21:08:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 21:08:20] 
[2025-12-02 21:08:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 21:08:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 21:08:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 21:08:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 21:08:20] 
[2025-12-02 21:08:20] 2025-12-02 20:07:49,609 | INFO     | ***************************************
[2025-12-02 21:08:20] 2025-12-02 20:07:50,112 | INFO     | executing command: df -mP /tmp/job_10943950/atlas/pilot/slots/0
[2025-12-02 21:08:20] 2025-12-02 20:07:50,118 | INFO     | sufficient remaining disk space (223089786880 B)
[2025-12-02 21:08:20] 2025-12-02 20:07:50,119 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 21:08:20] 2025-12-02 20:07:50,119 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 21:08:20] 2025-12-02 20:07:50,119 | INFO     | update_server=False
[2025-12-02 21:08:20] 2025-12-02 20:07:50,119 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 21:08:20] 2025-12-02 20:07:50,119 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 21:08:20] 2025-12-02 20:07:50,119 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 21:08:20] 2025-12-02 20:07:50,119 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 21:08:20] 2025-12-02 20:07:50,119 | INFO     | aborting loop
[2025-12-02 21:08:20] 2025-12-02 20:07:50,223 | INFO     | all data control threads have been joined
[2025-12-02 21:08:20] 2025-12-02 20:07:50,364 | INFO     | all payload control threads have been joined
[2025-12-02 21:08:20] 2025-12-02 20:07:51,124 | INFO     | [job] retrieve thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:51,124 | INFO     | [job] queue monitor thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:51,124 | INFO     | [job] job monitor thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:51,184 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:51,228 | INFO     | [data] control thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:51,241 | INFO     | [data] copytool_in thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:51,288 | INFO     | [payload] failed_post thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:51,339 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:51,350 | INFO     | all job control threads have been joined
[2025-12-02 21:08:20] 2025-12-02 20:07:51,369 | INFO     | [payload] control thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:51,431 | INFO     | [job] validate thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:51,906 | INFO     | [payload] validate_post thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:52,124 | INFO     | [data] copytool_out thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:52,355 | INFO     | [job] control thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:52,384 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:52,411 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 21:08:20] 2025-12-02 20:07:52,595 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:07:56,416 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 21:08:20] 2025-12-02 20:08:01,162 | INFO     | [monitor] cgroup control has ended
[2025-12-02 21:08:20] 2025-12-02 20:08:01,972 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-02 21:08:20] 2025-12-02 20:08:06,997 | INFO     | all workflow threads have been joined
[2025-12-02 21:08:20] 2025-12-02 20:08:06,997 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 21:08:20] 2025-12-02 20:08:06,997 | INFO     | traces error code: 0
[2025-12-02 21:08:20] 2025-12-02 20:08:06,997 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 21:08:20] 2025-12-02 20:08:20,608 | INFO     | PID=21751 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 21:08:20] 2025-12-02 20:08:20,608 | INFO     | .. there are 3 such processes running
[2025-12-02 21:08:20] 2025-12-02 20:08:20,608 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 21:08:20] 2025-12-02 20:08:20,608 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 21:08:20] 2025-12-02 20:08:20,608 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 21:08:20] 2025-12-02 20:08:20,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 21:08:20] 2025-12-02 20:08:20,608 | INFO     | [monitor] control thread has ended
[2025-12-02 21:08:20] 2025-12-02 20:08:20,656 [wrapper] ==== pilot stdout END ====
[2025-12-02 21:08:20] 2025-12-02 20:08:20,657 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 21:08:20] 2025-12-02 20:08:20,658 [wrapper] pilotpid: 21751
[2025-12-02 21:08:20] 2025-12-02 20:08:20,659 [wrapper] Pilot exit status: 0
[2025-12-02 21:08:20] 2025-12-02 20:08:20,664 [wrapper] pandaids: 6897834146
[2025-12-02 21:08:20] 2025-12-02 20:08:20,687 [wrapper] cleanup supervisor_pilot 31335 21752
[2025-12-02 21:08:20] 2025-12-02 20:08:20,688 [wrapper] Test setup, not cleaning
[2025-12-02 21:08:20] 2025-12-02 20:08:20,689 [wrapper] apfmon messages muted
[2025-12-02 21:08:20] 2025-12-02 20:08:20,690 [wrapper] ==== wrapper stdout END ====
[2025-12-02 21:08:20] 2025-12-02 20:08:20,692 [wrapper] ==== wrapper stderr END ====
[2025-12-02 21:08:20]  *** Error codes and diagnostics ***
[2025-12-02 21:08:20]     "exeErrorCode": 0,
[2025-12-02 21:08:20]     "exeErrorDiag": "",
[2025-12-02 21:08:20]     "pilotErrorCode": 0,
[2025-12-02 21:08:20]     "pilotErrorDiag": "",
[2025-12-02 21:08:20]  *** Listing of results directory ***
[2025-12-02 21:08:20] total 1072020
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user    576529 Nov 28 23:41 pilot3.tar.gz
[2025-12-02 21:08:20] -rwx------ 1 mf493845 unix-user     36292 Nov 28 23:46 runpilot2-wrapper.sh
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user      5112 Nov 28 23:49 queuedata.json
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user       100 Dec  2 15:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 21:08:20] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 15:45 run_atlas
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user       105 Dec  2 15:45 job.xml
[2025-12-02 21:08:20] -rw-r--r-- 2 mf493845 unix-user 377345849 Dec  2 17:21 EVNT.47531050._000484.pool.root.1
[2025-12-02 21:08:20] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 17:21 start_atlas.sh
[2025-12-02 21:08:20] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 17:21 shared
[2025-12-02 21:08:20] -rw-r--r-- 2 mf493845 unix-user    590126 Dec  2 17:21 input.tar.gz
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user      6392 Dec  2 17:21 init_data.xml
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user         0 Dec  2 17:21 boinc_setup_complete
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user      8192 Dec  2 17:21 boinc_mmap_file
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user         0 Dec  2 17:21 boinc_lockfile
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user      2879 Dec  2 17:21 pandaJob.out
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user    988852 Dec  2 17:21 agis_schedconf.cvmfs.json
[2025-12-02 21:08:20] drwx------ 5 mf493845 unix-user       440 Dec  2 17:21 pilot3
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user 709286146 Dec  2 21:07 HITS.47531058._000996.pool.root.1
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user      1030 Dec  2 21:07 memory_monitor_summary.json
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user   1516240 Dec  2 21:07 agis_ddmendpoints.agis.ALL.json
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user   1623954 Dec  2 21:07 log.47531058._000996.job.log.tgz.1
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user     28025 Dec  2 21:07 heartbeat.json
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user       820 Dec  2 21:08 pilotlog.txt
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user        95 Dec  2 21:08 pilot_heartbeat.json
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user   1977250 Dec  2 21:08 log.47531058._000996.job.log.1
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user       353 Dec  2 21:08 output.list
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user       620 Dec  2 21:08 runtime_log
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user   3635200 Dec  2 21:08 result.tar.gz
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user      9221 Dec  2 21:08 runtime_log.err
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user       649 Dec  2 21:08 4MuMDmPPMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmobLKDmvyPwjn.diag
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user     21770 Dec  2 21:08 stderr.txt
[2025-12-02 21:08:20] HITS file was successfully produced:
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user 709286146 Dec  2 21:07 shared/HITS.pool.root.1
[2025-12-02 21:08:20]  *** Contents of shared directory: ***
[2025-12-02 21:08:20] total 1065316
[2025-12-02 21:08:20] -rw-r--r-- 2 mf493845 unix-user 377345849 Dec  2 17:21 ATLAS.root_0
[2025-12-02 21:08:20] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 17:21 start_atlas.sh
[2025-12-02 21:08:20] -rw-r--r-- 2 mf493845 unix-user    590126 Dec  2 17:21 input.tar.gz
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user 709286146 Dec  2 21:07 HITS.pool.root.1
[2025-12-02 21:08:20] -rw------- 1 mf493845 unix-user   3635200 Dec  2 21:08 result.tar.gz
21:08:22 (17926): run_atlas exited; CPU time 102783.837475
21:08:22 (17926): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN