Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
14:34:44 (514718): wrapper (7.7.26015): starting
14:34:44 (514718): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 14:34:44] Arguments: --nthreads 12
[2025-12-02 14:34:44] Threads: 12
[2025-12-02 14:34:44] Checking for CVMFS
[2025-12-02 14:34:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 14:34:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 14:34:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 14:34:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 14:34:45] 2.13.3.0 4869 1049 51332 153567 2 68 6590202 10240001 582 130560 0 5090743 99.996 154903 1265 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-02 14:34:45] CVMFS is ok
[2025-12-02 14:34:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 14:34:45] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-02 14:34:45] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-02 14:34:45] Further information can be found at the LHC@home message board.
[2025-12-02 14:34:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 14:34:45] Checking for apptainer binary...
[2025-12-02 14:34:45] apptainer is not installed, using version from CVMFS
[2025-12-02 14:34:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 14:34:45] pots
[2025-12-02 14:34:45] apptainer works
[2025-12-02 14:34:45] Set ATHENA_PROC_NUMBER=12
[2025-12-02 14:34:45] Set ATHENA_CORE_NUMBER=12
[2025-12-02 14:34:45] Starting ATLAS job with PandaID=6900297492
[2025-12-02 14:34:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 16:02:06]  *** The last 200 lines of the pilot log: ***
[2025-12-02 16:02:06] 2025-12-02 21:00:47,559 | INFO     | time since job start (5155s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:00:48,984 | INFO     | monitor loop #390: job 0:6900297492 is in state 'finished'
[2025-12-02 16:02:06] 2025-12-02 21:00:48,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:06] 2025-12-02 21:00:49,564 | INFO     | time since job start (5157s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:00:51,487 | INFO     | monitor loop #391: job 0:6900297492 is in state 'finished'
[2025-12-02 16:02:06] 2025-12-02 21:00:51,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:06] 2025-12-02 21:00:51,570 | INFO     | time since job start (5159s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:00:53,574 | INFO     | time since job start (5161s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:00:53,991 | INFO     | monitor loop #392: job 0:6900297492 is in state 'finished'
[2025-12-02 16:02:06] 2025-12-02 21:00:53,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:06] 2025-12-02 21:00:55,580 | INFO     | time since job start (5163s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:00:56,494 | INFO     | monitor loop #393: job 0:6900297492 is in state 'finished'
[2025-12-02 16:02:06] 2025-12-02 21:00:56,494 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:06] 2025-12-02 21:00:57,586 | INFO     | time since job start (5165s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:00:58,998 | INFO     | monitor loop #394: job 0:6900297492 is in state 'finished'
[2025-12-02 16:02:06] 2025-12-02 21:00:58,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:06] 2025-12-02 21:00:59,591 | INFO     | time since job start (5167s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:01:01,500 | INFO     | monitor loop #395: job 0:6900297492 is in state 'finished'
[2025-12-02 16:02:06] 2025-12-02 21:01:01,500 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:06] 2025-12-02 21:01:01,597 | INFO     | time since job start (5169s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:01:03,603 | INFO     | time since job start (5171s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:01:04,001 | INFO     | monitor loop #396: job 0:6900297492 is in state 'finished'
[2025-12-02 16:02:06] 2025-12-02 21:01:04,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:06] 2025-12-02 21:01:05,609 | INFO     | time since job start (5173s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:01:06,505 | INFO     | monitor loop #397: job 0:6900297492 is in state 'finished'
[2025-12-02 16:02:06] 2025-12-02 21:01:06,505 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:06] 2025-12-02 21:01:07,613 | INFO     | time since job start (5175s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:01:08,694 | INFO     | PID=518442 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 16:02:06] 2025-12-02 21:01:09,008 | INFO     | monitor loop #398: job 0:6900297492 is in state 'finished'
[2025-12-02 16:02:06] 2025-12-02 21:01:09,009 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:06] 2025-12-02 21:01:09,694 | INFO     | time since job start (5177s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:01:11,512 | INFO     | monitor loop #399: job 0:6900297492 is in state 'finished'
[2025-12-02 16:02:06] 2025-12-02 21:01:11,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:06] 2025-12-02 21:01:11,700 | INFO     | time since job start (5179s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:01:13,705 | INFO     | time since job start (5181s) is within the limit (172800.0s)
[2025-12-02 16:02:06] 2025-12-02 21:01:14,015 | INFO     | monitor loop #400: job 0:6900297492 is in state 'finished'
[2025-12-02 16:02:06] 2025-12-02 21:01:14,015 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 16:02:06] 2025-12-02 21:01:14,679 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 16:02:06] 2025-12-02 21:01:14,682 | INFO     | found 14 cores (14 cores per socket, 1 socket) , CPU MHz: 2160.277357142857
[2025-12-02 16:02:06] 2025-12-02 21:01:14,683 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6900297492/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 16:02:06] 2025-12-02 21:01:14,684 | INFO     | extracted standard info from prmon json
[2025-12-02 16:02:06] 2025-12-02 21:01:14,684 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 16:02:06] 2025-12-02 21:01:14,684 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 16:02:06] 2025-12-02 21:01:14,684 | INFO     | fitting pss+swap vs Time
[2025-12-02 16:02:06] 2025-12-02 21:01:14,684 | INFO     | sum of square deviations: 141539398.0
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | sum of deviations: -10370426817.0
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | mean x: 1764706733.0
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | mean y: 3539727.6233766233
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | intersect: 129301546407.31592
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | chi2: 1.7586449177870205
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | current memory leak: -73.27 B/s (using 77 data points, chi2=1.76)
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | could have reported an average CPU frequency of 3011 MHz (6 samples)
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | ..............................
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | . Timing measurements:
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | . get job = 0 s
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | . initial setup = 2 s
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | . payload setup = 3 s
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | . stage-in = 0 s
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | . payload execution = 5068 s
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | . stage-out = 0 s
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | . log creation = 0 s
[2025-12-02 16:02:06] 2025-12-02 21:01:14,685 | INFO     | ..............................
[2025-12-02 16:02:06] 2025-12-02 21:01:14,705 | INFO     | 
[2025-12-02 16:02:06] 2025-12-02 21:01:14,705 | INFO     | job summary report
[2025-12-02 16:02:06] 2025-12-02 21:01:14,705 | INFO     | --------------------------------------------------
[2025-12-02 16:02:06] 2025-12-02 21:01:14,705 | INFO     | PanDA job id: 6900297492
[2025-12-02 16:02:06] 2025-12-02 21:01:14,705 | INFO     | task id: 47556173
[2025-12-02 16:02:06] 2025-12-02 21:01:14,705 | INFO     | errors: (none)
[2025-12-02 16:02:06] 2025-12-02 21:01:14,705 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 16:02:06] 2025-12-02 21:01:14,705 | INFO     | pilot state: finished 
[2025-12-02 16:02:06] 2025-12-02 21:01:14,705 | INFO     | transexitcode: 0
[2025-12-02 16:02:06] 2025-12-02 21:01:14,705 | INFO     | exeerrorcode: 0
[2025-12-02 16:02:06] 2025-12-02 21:01:14,705 | INFO     | exeerrordiag: 
[2025-12-02 16:02:06] 2025-12-02 21:01:14,705 | INFO     | exitcode: 0
[2025-12-02 16:02:06] 2025-12-02 21:01:14,706 | INFO     | exitmsg: OK
[2025-12-02 16:02:06] 2025-12-02 21:01:14,706 | INFO     | cpuconsumptiontime: 56362 s
[2025-12-02 16:02:06] 2025-12-02 21:01:14,706 | INFO     | nevents: 1000
[2025-12-02 16:02:06] 2025-12-02 21:01:14,706 | INFO     | neventsw: 0
[2025-12-02 16:02:06] 2025-12-02 21:01:14,706 | INFO     | pid: 524894
[2025-12-02 16:02:06] 2025-12-02 21:01:14,706 | INFO     | pgrp: 524894
[2025-12-02 16:02:06] 2025-12-02 21:01:14,706 | INFO     | corecount: 12
[2025-12-02 16:02:06] 2025-12-02 21:01:14,706 | INFO     | event service: False
[2025-12-02 16:02:06] 2025-12-02 21:01:14,706 | INFO     | sizes: {0: 2284271, 2: 2284533, 11: 2284561, 5075: 2311773, 5076: 2320781, 5077: 2320837, 5169: 2321211}
[2025-12-02 16:02:06] 2025-12-02 21:01:14,706 | INFO     | --------------------------------------------------
[2025-12-02 16:02:06] 2025-12-02 21:01:14,706 | INFO     | 
[2025-12-02 16:02:06] 2025-12-02 21:01:14,706 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 16:02:06] 2025-12-02 21:01:14,723 | INFO     | job 6900297492 has completed (purged errors)
[2025-12-02 16:02:06] 2025-12-02 21:01:14,724 | INFO     | overall cleanup function is called
[2025-12-02 16:02:06] 2025-12-02 21:01:15,732 | INFO     | --- collectZombieJob: --- 10, [524894]
[2025-12-02 16:02:06] 2025-12-02 21:01:15,733 | INFO     | zombie collector waiting for pid 524894
[2025-12-02 16:02:06] 2025-12-02 21:01:15,733 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 16:02:06] 2025-12-02 21:01:15,733 | INFO     | collected zombie processes
[2025-12-02 16:02:06] 2025-12-02 21:01:15,733 | INFO     | will attempt to kill all subprocesses of pid=524894
[2025-12-02 16:02:06] 2025-12-02 21:01:15,801 | INFO     | process IDs to be killed: [524894] (in reverse order)
[2025-12-02 16:02:06] 2025-12-02 21:01:15,847 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 16:02:06] 2025-12-02 21:01:15,847 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 16:02:06] 2025-12-02 21:01:15,849 | INFO     | did not find any defunct processes belonging to 524894
[2025-12-02 16:02:06] 2025-12-02 21:01:15,850 | INFO     | did not find any defunct processes belonging to 524894
[2025-12-02 16:02:06] 2025-12-02 21:01:15,850 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 16:02:06] 2025-12-02 21:01:15,850 | INFO     | ready for new job
[2025-12-02 16:02:06] 2025-12-02 21:01:15,851 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 16:02:06] 2025-12-02 21:01:15,851 | INFO     | ***************************************
[2025-12-02 16:02:06] 2025-12-02 21:01:15,851 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 16:02:06] 2025-12-02 21:01:15,851 | INFO     | ***************************************
[2025-12-02 16:02:06] 2025-12-02 21:01:15,851 | INFO     | 
[2025-12-02 16:02:06] 2025-12-02 21:01:15,851 | INFO     | architecture information:
[2025-12-02 16:02:06] 2025-12-02 21:01:15,852 | INFO     | executing command: cat /etc/os-release
[2025-12-02 16:02:06] 2025-12-02 21:01:15,863 | INFO     | cat /etc/os-release:
[2025-12-02 16:02:06] NAME="CentOS Linux"
[2025-12-02 16:02:06] VERSION="7 (Core)"
[2025-12-02 16:02:06] ID="centos"
[2025-12-02 16:02:06] ID_LIKE="rhel fedora"
[2025-12-02 16:02:06] VERSION_ID="7"
[2025-12-02 16:02:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 16:02:06] ANSI_COLOR="0;31"
[2025-12-02 16:02:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 16:02:06] HOME_URL="https://www.centos.org/"
[2025-12-02 16:02:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 16:02:06] 
[2025-12-02 16:02:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 16:02:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 16:02:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 16:02:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 16:02:06] 
[2025-12-02 16:02:06] 2025-12-02 21:01:15,863 | INFO     | ***************************************
[2025-12-02 16:02:06] 2025-12-02 21:01:16,365 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-12-02 16:02:06] 2025-12-02 21:01:16,383 | INFO     | sufficient remaining disk space (381833707520 B)
[2025-12-02 16:02:06] 2025-12-02 21:01:16,383 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 16:02:06] 2025-12-02 21:01:16,383 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 16:02:06] 2025-12-02 21:01:16,384 | INFO     | update_server=False
[2025-12-02 16:02:06] 2025-12-02 21:01:16,384 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 16:02:06] 2025-12-02 21:01:16,384 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 16:02:06] 2025-12-02 21:01:16,519 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 16:02:06] 2025-12-02 21:01:16,519 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 16:02:06] 2025-12-02 21:01:16,519 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 16:02:06] 2025-12-02 21:01:16,520 | INFO     | will abort loop
[2025-12-02 16:02:06] 2025-12-02 21:01:16,987 | INFO     | all data control threads have been joined
[2025-12-02 16:02:06] 2025-12-02 21:01:17,263 | INFO     | all job control threads have been joined
[2025-12-02 16:02:06] 2025-12-02 21:01:17,306 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 16:02:06] 2025-12-02 21:01:17,388 | INFO     | [job] queue monitor thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:17,389 | INFO     | [job] retrieve thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:17,525 | INFO     | [job] job monitor thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:17,619 | INFO     | all payload control threads have been joined
[2025-12-02 16:02:06] 2025-12-02 21:01:17,837 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:17,882 | INFO     | [payload] validate_post thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:17,991 | INFO     | [data] control thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:18,080 | INFO     | [job] validate thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:18,081 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:18,085 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:18,269 | INFO     | [job] control thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:18,623 | INFO     | [payload] control thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:18,754 | INFO     | [data] copytool_in thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:18,848 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 16:02:06] 2025-12-02 21:01:18,917 | INFO     | [payload] failed_post thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:19,312 | INFO     | [data] copytool_out thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:22,854 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:27,278 | INFO     | job.realtimelogging is not enabled
[2025-12-02 16:02:06] 2025-12-02 21:01:28,280 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 16:02:06] 2025-12-02 21:01:46,870 | INFO     | PID=518442 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 16:02:06] 2025-12-02 21:01:46,871 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 16:02:06] 2025-12-02 21:01:46,871 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 16:02:06] 2025-12-02 21:01:46,871 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 16:02:06] 2025-12-02 21:02:00,773 | INFO     | [monitor] cgroup control has ended
[2025-12-02 16:02:06] 2025-12-02 21:02:01,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129138851112768)>', '<ExcThread(monitor, started 129138367121152)>']
[2025-12-02 16:02:06] 2025-12-02 21:02:01,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 16:02:06] 2025-12-02 21:02:01,948 | INFO     | [monitor] control thread has ended
[2025-12-02 16:02:06] 2025-12-02 21:02:06,761 | INFO     | all workflow threads have been joined
[2025-12-02 16:02:06] 2025-12-02 21:02:06,761 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 16:02:06] 2025-12-02 21:02:06,762 | INFO     | traces error code: 0
[2025-12-02 16:02:06] 2025-12-02 21:02:06,762 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 16:02:06] 2025-12-02 21:02:06,809 [wrapper] ==== pilot stdout END ====
[2025-12-02 16:02:06] 2025-12-02 21:02:06,813 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 16:02:06] 2025-12-02 21:02:06,817 [wrapper] pilotpid: 518442
[2025-12-02 16:02:06] 2025-12-02 21:02:06,820 [wrapper] Pilot exit status: 0
[2025-12-02 16:02:06] 2025-12-02 21:02:06,828 [wrapper] pandaids: 6900297492
[2025-12-02 16:02:06] 2025-12-02 21:02:06,849 [wrapper] cleanup supervisor_pilot  537510 518443
[2025-12-02 16:02:06] 2025-12-02 21:02:06,852 [wrapper] Test setup, not cleaning
[2025-12-02 16:02:06] 2025-12-02 21:02:06,855 [wrapper] apfmon messages muted
[2025-12-02 16:02:06] 2025-12-02 21:02:06,858 [wrapper] ==== wrapper stdout END ====
[2025-12-02 16:02:06] 2025-12-02 21:02:06,860 [wrapper] ==== wrapper stderr END ====
[2025-12-02 16:02:06]  *** Error codes and diagnostics ***
[2025-12-02 16:02:06]     "exeErrorCode": 0,
[2025-12-02 16:02:06]     "exeErrorDiag": "",
[2025-12-02 16:02:06]     "pilotErrorCode": 0,
[2025-12-02 16:02:06]     "pilotErrorDiag": "",
[2025-12-02 16:02:06]  *** Listing of results directory ***
[2025-12-02 16:02:06] total 1297084
[2025-12-02 16:02:06] -rwx------ 1 4871 1028     36292 Nov 30 08:32 runpilot2-wrapper.sh
[2025-12-02 16:02:06] -rw-r--r-- 1 root root      5112 Nov 30 08:32 queuedata.json
[2025-12-02 16:02:06] -rw-r--r-- 1 root root    576529 Nov 30 08:32 pilot3.tar.gz
[2025-12-02 16:02:06] -rw-r--r-- 1 root root       100 Dec  2 14:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 16:02:06] -rwxr-xr-x 1 root root      7986 Dec  2 14:34 run_atlas
[2025-12-02 16:02:06] -rw-r--r-- 1 root root       105 Dec  2 14:34 job.xml
[2025-12-02 16:02:06] -rw-r--r-- 2 root root 407682764 Dec  2 14:34 EVNT.47483658._003443.pool.root.1
[2025-12-02 16:02:06] -rw-r--r-- 1 root root      9318 Dec  2 14:34 init_data.xml
[2025-12-02 16:02:06] drwxrwx--x 2 root root      4096 Dec  2 14:34 shared
[2025-12-02 16:02:06] -rw-r--r-- 2 root root    590100 Dec  2 14:34 input.tar.gz
[2025-12-02 16:02:06] -rw-r--r-- 2 root root     15847 Dec  2 14:34 start_atlas.sh
[2025-12-02 16:02:06] -rw-r--r-- 1 root root         0 Dec  2 14:34 boinc_lockfile
[2025-12-02 16:02:06] -rw-r--r-- 1 root root      2785 Dec  2 14:34 pandaJob.out
[2025-12-02 16:02:06] -rw------- 1 root root    989224 Dec  2 14:34 agis_schedconf.cvmfs.json
[2025-12-02 16:02:06] -rw------- 1 root root   1516240 Dec  2 14:34 agis_ddmendpoints.agis.ALL.json
[2025-12-02 16:02:06] drwxr-xr-x 5  320  320      4096 Dec  2 14:34 pilot3
[2025-12-02 16:02:06] -rw-r--r-- 1 root root       530 Dec  2 15:55 boinc_task_state.xml
[2025-12-02 16:02:06] -rw------- 1 root root 911416812 Dec  2 15:59 HITS.47556173._003999.pool.root.1
[2025-12-02 16:02:06] -rw------- 1 root root      1035 Dec  2 15:59 memory_monitor_summary.json
[2025-12-02 16:02:06] -rw------- 1 root root   1840811 Dec  2 15:59 log.47556173._003999.job.log.tgz.1
[2025-12-02 16:02:06] -rw------- 1 root root      8572 Dec  2 16:01 heartbeat.json
[2025-12-02 16:02:06] -rw------- 1 root root        95 Dec  2 16:01 pilot_heartbeat.json
[2025-12-02 16:02:06] -rw-r--r-- 1 root root      8192 Dec  2 16:01 boinc_mmap_file
[2025-12-02 16:02:06] -rw-r--r-- 1 root root        27 Dec  2 16:01 wrapper_checkpoint.txt
[2025-12-02 16:02:06] -rw------- 1 root root      5013 Dec  2 16:02 pilotlog.txt
[2025-12-02 16:02:06] -rw------- 1 root root    755977 Dec  2 16:02 log.47556173._003999.job.log.1
[2025-12-02 16:02:06] -rw------- 1 root root       353 Dec  2 16:02 output.list
[2025-12-02 16:02:06] -rw-r--r-- 1 root root       620 Dec  2 16:02 runtime_log
[2025-12-02 16:02:06] -rw------- 1 root root   2621440 Dec  2 16:02 result.tar.gz
[2025-12-02 16:02:06] -rw-r--r-- 1 root root      8861 Dec  2 16:02 runtime_log.err
[2025-12-02 16:02:06] -rw------- 1 root root       641 Dec  2 16:02 Ps2MDmEiwj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqfPKDm1uvE2m.diag
[2025-12-02 16:02:06] -rw-r--r-- 1 root root     22597 Dec  2 16:02 stderr.txt
[2025-12-02 16:02:06] HITS file was successfully produced:
[2025-12-02 16:02:06] -rw------- 1 root root 911416812 Dec  2 15:59 shared/HITS.pool.root.1
[2025-12-02 16:02:06]  *** Contents of shared directory: ***
[2025-12-02 16:02:06] total 1291348
[2025-12-02 16:02:06] -rw-r--r-- 2 root root 407682764 Dec  2 14:34 ATLAS.root_0
[2025-12-02 16:02:06] -rw-r--r-- 2 root root    590100 Dec  2 14:34 input.tar.gz
[2025-12-02 16:02:06] -rw-r--r-- 2 root root     15847 Dec  2 14:34 start_atlas.sh
[2025-12-02 16:02:06] -rw------- 1 root root 911416812 Dec  2 15:59 HITS.pool.root.1
[2025-12-02 16:02:06] -rw------- 1 root root   2621440 Dec  2 16:02 result.tar.gz
16:02:08 (514718): run_atlas exited; CPU time 56314.298180
16:02:08 (514718): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN