Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:40:55 (31209): wrapper (7.7.26015): starting
17:40:55 (31209): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 17:40:55] Arguments: --nthreads 8
[2025-12-02 17:40:55] Threads: 8
[2025-12-02 17:40:55] Checking for CVMFS
[2025-12-02 17:40:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 17:40:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 17:40:55] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 17:40:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 17:40:56] 2.11.0.0 4656 75045 80340 153562 1 76 4069616 4096001 3672 130560 1 5578533 99.451 4926461 498 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 17:40:56] CVMFS is ok
[2025-12-02 17:40:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 17:40:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 17:40:56] Further information can be found at the LHC@home message board.
[2025-12-02 17:40:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 17:40:56] Checking for apptainer binary...
[2025-12-02 17:40:56] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 17:40:56] apptainer is not installed, using version from CVMFS
[2025-12-02 17:40:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 17:40:56] WARNING: Environment variable TMPDIR already has value [/tmp/job_10943953/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node122
[2025-12-02 17:40:56] apptainer works
[2025-12-02 17:40:56] Set ATHENA_PROC_NUMBER=8
[2025-12-02 17:40:56] Set ATHENA_CORE_NUMBER=8
[2025-12-02 17:40:56] Starting ATLAS job with PandaID=6895345484
[2025-12-02 17:40:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10943953/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 22:44:48]  *** The last 200 lines of the pilot log: ***
[2025-12-02 22:44:48] 2025-12-02 21:44:13,826 | INFO     | this job has now completed (state=finished)
[2025-12-02 22:44:48] 2025-12-02 21:44:13,826 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-02 22:44:48] 2025-12-02 21:44:13,826 | INFO     | log transfer has been attempted: DONE
[2025-12-02 22:44:48] 2025-12-02 21:44:13,826 | INFO     | job 6895345484 has finished - writing final server update
[2025-12-02 22:44:48] 2025-12-02 21:44:13,827 | INFO     | total number of processed events: 1000 (read)
[2025-12-02 22:44:48] 2025-12-02 21:44:13,827 | INFO     | executing command: lscpu
[2025-12-02 22:44:48] 2025-12-02 21:44:13,870 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-02 22:44:48] 2025-12-02 21:44:14,156 | INFO     | monitor loop #1289: job 0:6895345484 is in state 'finished'
[2025-12-02 22:44:48] 2025-12-02 21:44:14,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 22:44:48] 2025-12-02 21:44:15,406 | INFO     | time since job start (18193s) is within the limit (172800.0s)
[2025-12-02 22:44:48] 2025-12-02 21:44:16,121 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 22:44:48] 2025-12-02 21:44:16,141 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2543.7023984375
[2025-12-02 22:44:48] 2025-12-02 21:44:16,152 | INFO     | using path: /tmp/job_10943953/atlas/pilot/slots/0/PanDA_Pilot-6895345484/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 22:44:48] 2025-12-02 21:44:16,153 | INFO     | extracted standard info from prmon json
[2025-12-02 22:44:48] 2025-12-02 21:44:16,153 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 22:44:48] 2025-12-02 21:44:16,153 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 22:44:48] 2025-12-02 21:44:16,156 | INFO     | fitting pss+swap vs Time
[2025-12-02 22:44:48] 2025-12-02 21:44:16,156 | INFO     | sum of square deviations: 8205826414.5
[2025-12-02 22:44:48] 2025-12-02 21:44:16,158 | INFO     | sum of deviations: 231703621677.49997
[2025-12-02 22:44:48] 2025-12-02 21:44:16,158 | INFO     | mean x: 1764702754.5
[2025-12-02 22:44:48] 2025-12-02 21:44:16,158 | INFO     | mean y: 2882766.553691275
[2025-12-02 22:44:48] 2025-12-02 21:44:16,158 | INFO     | intersect: -49826104436.903336
[2025-12-02 22:44:48] 2025-12-02 21:44:16,158 | INFO     | chi2: 4.81648949125186
[2025-12-02 22:44:48] 2025-12-02 21:44:16,158 | INFO     | sum of square deviations: 7799669962.0
[2025-12-02 22:44:48] 2025-12-02 21:44:16,159 | INFO     | sum of deviations: 273563306204.0
[2025-12-02 22:44:48] 2025-12-02 21:44:16,159 | INFO     | mean x: 1764702602.0
[2025-12-02 22:44:48] 2025-12-02 21:44:16,159 | INFO     | mean y: 2898335.7645051195
[2025-12-02 22:44:48] 2025-12-02 21:44:16,160 | INFO     | intersect: -61891756261.40671
[2025-12-02 22:44:48] 2025-12-02 21:44:16,160 | INFO     | chi2: 3.666495849372406
[2025-12-02 22:44:48] 2025-12-02 21:44:16,160 | INFO     | current chi2=3.666495849372406 (change=23.87617878058648 %)
[2025-12-02 22:44:48] 2025-12-02 21:44:16,160 | INFO     | right removable region: 292
[2025-12-02 22:44:48] 2025-12-02 21:44:16,160 | INFO     | sum of square deviations: 7799669962.0
[2025-12-02 22:44:48] 2025-12-02 21:44:16,161 | INFO     | sum of deviations: 123635572869.99997
[2025-12-02 22:44:48] 2025-12-02 21:44:16,161 | INFO     | mean x: 1764702907.0
[2025-12-02 22:44:48] 2025-12-02 21:44:16,161 | INFO     | mean y: 2923278.2866894198
[2025-12-02 22:44:48] 2025-12-02 21:44:16,161 | INFO     | intersect: -27970062234.596897
[2025-12-02 22:44:48] 2025-12-02 21:44:16,162 | INFO     | chi2: 1.2823638600899456
[2025-12-02 22:44:48] 2025-12-02 21:44:16,162 | INFO     | current chi2=1.2823638600899456 (change=73.3755495071859 %)
[2025-12-02 22:44:48] 2025-12-02 21:44:16,162 | INFO     | sum of square deviations: 7407141672.0
[2025-12-02 22:44:48] 2025-12-02 21:44:16,163 | INFO     | sum of deviations: 103584943965.50006
[2025-12-02 22:44:48] 2025-12-02 21:44:16,163 | INFO     | mean x: 1764703059.5
[2025-12-02 22:44:48] 2025-12-02 21:44:16,163 | INFO     | mean y: 2931052.378472222
[2025-12-02 22:44:48] 2025-12-02 21:44:16,163 | INFO     | intersect: -24675504385.821693
[2025-12-02 22:44:48] 2025-12-02 21:44:16,163 | INFO     | chi2: 1.219988171015424
[2025-12-02 22:44:48] 2025-12-02 21:44:16,163 | INFO     | current chi2=1.219988171015424 (change=4.864117823013717 %)
[2025-12-02 22:44:48] 2025-12-02 21:44:16,163 | INFO     | left removable region: 20
[2025-12-02 22:44:48] 2025-12-02 21:44:16,164 | INFO     | sum of square deviations: 6239923508.0
[2025-12-02 22:44:48] 2025-12-02 21:44:16,165 | INFO     | sum of deviations: 122369942674.00002
[2025-12-02 22:44:48] 2025-12-02 21:44:16,165 | INFO     | mean x: 1764703181.5
[2025-12-02 22:44:48] 2025-12-02 21:44:16,165 | INFO     | mean y: 2957163.654411765
[2025-12-02 22:44:48] 2025-12-02 21:44:16,165 | INFO     | intersect: -34604298338.74436
[2025-12-02 22:44:48] 2025-12-02 21:44:16,165 | INFO     | chi2: 0.019837683460426886
[2025-12-02 22:44:48] 2025-12-02 21:44:16,165 | INFO     | current memory leak: 19.61 B/s (using 272 data points, chi2=0.02)
[2025-12-02 22:44:48] 2025-12-02 21:44:16,165 | INFO     | could have reported an average CPU frequency of 2554 MHz (13 samples)
[2025-12-02 22:44:48] 2025-12-02 21:44:16,165 | INFO     | ..............................
[2025-12-02 22:44:48] 2025-12-02 21:44:16,166 | INFO     | . Timing measurements:
[2025-12-02 22:44:48] 2025-12-02 21:44:16,166 | INFO     | . get job = 0 s
[2025-12-02 22:44:48] 2025-12-02 21:44:16,166 | INFO     | . initial setup = 1 s
[2025-12-02 22:44:48] 2025-12-02 21:44:16,166 | INFO     | . payload setup = 17 s
[2025-12-02 22:44:48] 2025-12-02 21:44:16,166 | INFO     | . stage-in = 0 s
[2025-12-02 22:44:48] 2025-12-02 21:44:16,166 | INFO     | . payload execution = 18152 s
[2025-12-02 22:44:48] 2025-12-02 21:44:16,166 | INFO     | . stage-out = 1 s
[2025-12-02 22:44:48] 2025-12-02 21:44:16,166 | INFO     | . log creation = 0 s
[2025-12-02 22:44:48] 2025-12-02 21:44:16,166 | INFO     | ..............................
[2025-12-02 22:44:48] 2025-12-02 21:44:16,525 | INFO     | 
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | job summary report
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | --------------------------------------------------
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | PanDA job id: 6895345484
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | task id: 47556149
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | errors: (none)
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | pilot state: finished 
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | transexitcode: 0
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | exeerrorcode: 0
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | exeerrordiag: 
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | exitcode: 0
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | exitmsg: OK
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | cpuconsumptiontime: 139338 s
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | nevents: 1000
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | neventsw: 0
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | pid: 14756
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | pgrp: 14756
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | corecount: 8
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | event service: False
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | sizes: {0: 2283484, 1: 2284466, 3: 2284728, 11: 2284756, 18172: 2317693, 18173: 2317692, 18175: 2326900, 18178: 2326956, 18180: 2327202}
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | --------------------------------------------------
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | 
[2025-12-02 22:44:48] 2025-12-02 21:44:16,526 | INFO     | executing command: ls -lF /tmp/job_10943953/atlas/pilot/slots/0
[2025-12-02 22:44:48] 2025-12-02 21:44:16,537 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,537 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,537 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,537 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,537 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,537 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,537 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,537 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,537 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,537 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,537 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,537 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,538 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,538 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,538 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,538 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,538 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,538 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 22:44:48] 2025-12-02 21:44:16,538 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,538 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 22:44:48] 2025-12-02 21:44:16,538 | INFO     | job 6895345484 has completed (purged errors)
[2025-12-02 22:44:48] 2025-12-02 21:44:16,538 | INFO     | overall cleanup function is called
[2025-12-02 22:44:48] 2025-12-02 21:44:17,545 | INFO     | --- collectZombieJob: --- 10, [14756]
[2025-12-02 22:44:48] 2025-12-02 21:44:17,545 | INFO     | zombie collector waiting for pid 14756
[2025-12-02 22:44:48] 2025-12-02 21:44:17,545 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 22:44:48] 2025-12-02 21:44:17,546 | INFO     | collected zombie processes
[2025-12-02 22:44:48] 2025-12-02 21:44:17,546 | INFO     | will attempt to kill all subprocesses of pid=14756
[2025-12-02 22:44:48] 2025-12-02 21:44:17,725 | INFO     | process IDs to be killed: [14756] (in reverse order)
[2025-12-02 22:44:48] 2025-12-02 21:44:17,782 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 22:44:48] 2025-12-02 21:44:17,782 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 22:44:48] 2025-12-02 21:44:17,788 | INFO     | did not find any defunct processes belonging to 14756
[2025-12-02 22:44:48] 2025-12-02 21:44:17,794 | INFO     | did not find any defunct processes belonging to 14756
[2025-12-02 22:44:48] 2025-12-02 21:44:17,794 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 22:44:48] 2025-12-02 21:44:17,794 | INFO     | ready for new job
[2025-12-02 22:44:48] 2025-12-02 21:44:17,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 22:44:48] 2025-12-02 21:44:17,795 | INFO     | ***************************************
[2025-12-02 22:44:48] 2025-12-02 21:44:17,795 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 22:44:48] 2025-12-02 21:44:17,796 | INFO     | ***************************************
[2025-12-02 22:44:48] 2025-12-02 21:44:17,796 | INFO     | 
[2025-12-02 22:44:48] 2025-12-02 21:44:17,812 | INFO     | architecture information:
[2025-12-02 22:44:48] 2025-12-02 21:44:17,812 | INFO     | executing command: cat /etc/os-release
[2025-12-02 22:44:48] 2025-12-02 21:44:17,819 | INFO     | cat /etc/os-release:
[2025-12-02 22:44:48] NAME="CentOS Linux"
[2025-12-02 22:44:48] VERSION="7 (Core)"
[2025-12-02 22:44:48] ID="centos"
[2025-12-02 22:44:48] ID_LIKE="rhel fedora"
[2025-12-02 22:44:48] VERSION_ID="7"
[2025-12-02 22:44:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 22:44:48] ANSI_COLOR="0;31"
[2025-12-02 22:44:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 22:44:48] HOME_URL="https://www.centos.org/"
[2025-12-02 22:44:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 22:44:48] 
[2025-12-02 22:44:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 22:44:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 22:44:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 22:44:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 22:44:48] 
[2025-12-02 22:44:48] 2025-12-02 21:44:17,819 | INFO     | ***************************************
[2025-12-02 22:44:48] 2025-12-02 21:44:18,322 | INFO     | executing command: df -mP /tmp/job_10943953/atlas/pilot/slots/0
[2025-12-02 22:44:48] 2025-12-02 21:44:18,329 | INFO     | sufficient remaining disk space (220552232960 B)
[2025-12-02 22:44:48] 2025-12-02 21:44:18,329 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 22:44:48] 2025-12-02 21:44:18,329 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 22:44:48] 2025-12-02 21:44:18,329 | INFO     | update_server=False
[2025-12-02 22:44:48] 2025-12-02 21:44:18,329 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 22:44:48] 2025-12-02 21:44:18,329 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 22:44:48] 2025-12-02 21:44:18,329 | INFO     | aborting loop
[2025-12-02 22:44:48] 2025-12-02 21:44:18,510 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 22:44:48] 2025-12-02 21:44:18,738 | INFO     | all job control threads have been joined
[2025-12-02 22:44:48] 2025-12-02 21:44:19,221 | INFO     | all data control threads have been joined
[2025-12-02 22:44:48] 2025-12-02 21:44:19,334 | INFO     | [job] retrieve thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:19,335 | INFO     | [job] job monitor thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:19,453 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:19,531 | INFO     | [job] validate thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:19,727 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:19,743 | INFO     | [job] control thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:19,830 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 22:44:48] 2025-12-02 21:44:19,830 | INFO     | all payload control threads have been joined
[2025-12-02 22:44:48] 2025-12-02 21:44:19,848 | INFO     | [payload] failed_post thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:20,133 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:20,226 | INFO     | [data] control thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:20,266 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:20,515 | INFO     | [data] copytool_out thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:20,648 | INFO     | [data] copytool_in thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:20,756 | INFO     | [payload] validate_post thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:20,836 | INFO     | [payload] control thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:21,230 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 22:44:48] 2025-12-02 21:44:22,235 | INFO     | [job] queue monitor thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:23,835 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 22:44:48] 2025-12-02 21:44:32,124 | INFO     | [monitor] cgroup control has ended
[2025-12-02 22:44:48] 2025-12-02 21:44:34,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456054515456)>']
[2025-12-02 22:44:48] 2025-12-02 21:44:39,034 | INFO     | all workflow threads have been joined
[2025-12-02 22:44:48] 2025-12-02 21:44:39,034 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 22:44:48] 2025-12-02 21:44:39,034 | INFO     | traces error code: 0
[2025-12-02 22:44:48] 2025-12-02 21:44:39,034 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 22:44:48] 2025-12-02 21:44:48,700 | INFO     | PID=4435 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 22:44:48] 2025-12-02 21:44:48,700 | INFO     | .. there are 5 such processes running
[2025-12-02 22:44:48] 2025-12-02 21:44:48,701 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 22:44:48] 2025-12-02 21:44:48,701 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 22:44:48] 2025-12-02 21:44:48,701 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 22:44:48] 2025-12-02 21:44:48,701 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 22:44:48] 2025-12-02 21:44:48,701 | INFO     | [monitor] control thread has ended
[2025-12-02 22:44:48] 2025-12-02 21:44:48,767 [wrapper] ==== pilot stdout END ====
[2025-12-02 22:44:48] 2025-12-02 21:44:48,769 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 22:44:48] 2025-12-02 21:44:48,770 [wrapper] pilotpid: 4435
[2025-12-02 22:44:48] 2025-12-02 21:44:48,772 [wrapper] Pilot exit status: 0
[2025-12-02 22:44:48] 2025-12-02 21:44:48,777 [wrapper] pandaids: 6895345484
[2025-12-02 22:44:48] 2025-12-02 21:44:48,814 [wrapper] cleanup supervisor_pilot 19320 4436
[2025-12-02 22:44:48] 2025-12-02 21:44:48,815 [wrapper] Test setup, not cleaning
[2025-12-02 22:44:48] 2025-12-02 21:44:48,816 [wrapper] apfmon messages muted
[2025-12-02 22:44:48] 2025-12-02 21:44:48,818 [wrapper] ==== wrapper stdout END ====
[2025-12-02 22:44:48] 2025-12-02 21:44:48,819 [wrapper] ==== wrapper stderr END ====
[2025-12-02 22:44:48]  *** Error codes and diagnostics ***
[2025-12-02 22:44:48]     "exeErrorCode": 0,
[2025-12-02 22:44:48]     "exeErrorDiag": "",
[2025-12-02 22:44:48]     "pilotErrorCode": 0,
[2025-12-02 22:44:48]     "pilotErrorDiag": "",
[2025-12-02 22:44:48]  *** Listing of results directory ***
[2025-12-02 22:44:48] total 1311480
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user    576529 Nov 22 18:17 pilot3.tar.gz
[2025-12-02 22:44:48] -rwx------ 1 mf493845 unix-user     36292 Nov 22 18:23 runpilot2-wrapper.sh
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user      5112 Nov 22 18:23 queuedata.json
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user       100 Dec  2 15:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 22:44:48] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 15:56 run_atlas
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user       105 Dec  2 15:56 job.xml
[2025-12-02 22:44:48] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 17:40 start_atlas.sh
[2025-12-02 22:44:48] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 17:40 shared
[2025-12-02 22:44:48] -rw-r--r-- 2 mf493845 unix-user    590103 Dec  2 17:40 input.tar.gz
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user      6391 Dec  2 17:40 init_data.xml
[2025-12-02 22:44:48] -rw-r--r-- 2 mf493845 unix-user 409173813 Dec  2 17:40 EVNT.47483658._001103.pool.root.1
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user         0 Dec  2 17:40 boinc_setup_complete
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user      8192 Dec  2 17:40 boinc_mmap_file
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user         0 Dec  2 17:40 boinc_lockfile
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user      2784 Dec  2 17:40 pandaJob.out
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user    988852 Dec  2 17:41 agis_schedconf.cvmfs.json
[2025-12-02 22:44:48] drwx------ 5 mf493845 unix-user       440 Dec  2 17:41 pilot3
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user 921602905 Dec  2 22:43 HITS.47556149._000897.pool.root.1
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user      1033 Dec  2 22:44 memory_monitor_summary.json
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user   1516240 Dec  2 22:44 agis_ddmendpoints.agis.ALL.json
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user   1594068 Dec  2 22:44 log.47556149._000897.job.log.tgz.1
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user        95 Dec  2 22:44 pilot_heartbeat.json
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user      8577 Dec  2 22:44 heartbeat.json
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user       819 Dec  2 22:44 pilotlog.txt
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user   2552664 Dec  2 22:44 log.47556149._000897.job.log.1
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user       353 Dec  2 22:44 output.list
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user       620 Dec  2 22:44 runtime_log
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user   4167680 Dec  2 22:44 result.tar.gz
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user      9221 Dec  2 22:44 runtime_log.err
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user       651 Dec  2 22:44 jn8NDmqV6g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEJKKDmG5npDn.diag
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user     21952 Dec  2 22:44 stderr.txt
[2025-12-02 22:44:48] HITS file was successfully produced:
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user 921602905 Dec  2 22:43 shared/HITS.pool.root.1
[2025-12-02 22:44:48]  *** Contents of shared directory: ***
[2025-12-02 22:44:48] total 1304256
[2025-12-02 22:44:48] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 17:40 start_atlas.sh
[2025-12-02 22:44:48] -rw-r--r-- 2 mf493845 unix-user    590103 Dec  2 17:40 input.tar.gz
[2025-12-02 22:44:48] -rw-r--r-- 2 mf493845 unix-user 409173813 Dec  2 17:40 ATLAS.root_0
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user 921602905 Dec  2 22:43 HITS.pool.root.1
[2025-12-02 22:44:48] -rw------- 1 mf493845 unix-user   4167680 Dec  2 22:44 result.tar.gz
22:44:50 (31209): run_atlas exited; CPU time 139722.102162
22:44:50 (31209): called boinc_finish(0)

</stderr_txt>
]]>

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