Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:35:30 (4079026): wrapper (7.7.26015): starting
07:35:30 (4079026): wrapper: running run_atlas (--nthreads 11)
[2025-12-02 07:35:30] Arguments: --nthreads 11
[2025-12-02 07:35:30] Threads: 11
[2025-12-02 07:35:30] Checking for CVMFS
[2025-12-02 07:35:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 07:35:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 07:35:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 07:35:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 07:35:31] 2.13.2.0 7884 45297 227304 153556 0 587 34882317 40960000 29688 16776704 0 442015920 99.710 336056368 47731 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 07:35:31] CVMFS is ok
[2025-12-02 07:35:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 07:35:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 07:35:31] Further information can be found at the LHC@home message board.
[2025-12-02 07:35:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 07:35:31] Checking for apptainer binary...
[2025-12-02 07:35:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 07:35:31] Running /usr/bin/apptainer --version
[2025-12-02 07:35:31] apptainer version 1.4.4-1.el9
[2025-12-02 07:35:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 07:35:32] c-208-38.aglt2.org
[2025-12-02 07:35:32] apptainer works
[2025-12-02 07:35:32] Set ATHENA_PROC_NUMBER=11
[2025-12-02 07:35:32] Set ATHENA_CORE_NUMBER=11
[2025-12-02 07:35:32] Starting ATLAS job with PandaID=6895335449
[2025-12-02 07:35:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 16:12:21]  *** The last 200 lines of the pilot log: ***
[2025-12-02 16:12:21] 2025-12-02 21:11:45,000 | INFO     | time since job start (30930s) is within the limit (172800.0s)
[2025-12-02 16:12:21] 2025-12-02 21:11:45,574 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 16:12:21] 2025-12-02 21:11:45,580 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3778.165546875001
[2025-12-02 16:12:21] 2025-12-02 21:11:45,594 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895335449/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 16:12:21] 2025-12-02 21:11:45,595 | INFO     | extracted standard info from prmon json
[2025-12-02 16:12:21] 2025-12-02 21:11:45,595 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 16:12:21] 2025-12-02 21:11:45,595 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 16:12:21] 2025-12-02 21:11:45,600 | INFO     | fitting pss+swap vs Time
[2025-12-02 16:12:21] 2025-12-02 21:11:45,601 | INFO     | sum of square deviations: 40172746179.337944
[2025-12-02 16:12:21] 2025-12-02 21:11:45,604 | INFO     | sum of deviations: 368328528722.74384
[2025-12-02 16:12:21] 2025-12-02 21:11:45,604 | INFO     | mean x: 1764694458.9426877
[2025-12-02 16:12:21] 2025-12-02 21:11:45,604 | INFO     | mean y: 3295338.3359683794
[2025-12-02 16:12:21] 2025-12-02 21:11:45,604 | INFO     | intersect: -16176512504.669962
[2025-12-02 16:12:21] 2025-12-02 21:11:45,604 | INFO     | chi2: 8.566588022841044
[2025-12-02 16:12:21] 2025-12-02 21:11:45,605 | INFO     | sum of square deviations: 38993811826.32731
[2025-12-02 16:12:21] 2025-12-02 21:11:45,608 | INFO     | sum of deviations: 586117299720.0436
[2025-12-02 16:12:21] 2025-12-02 21:11:45,608 | INFO     | mean x: 1764694306.4570858
[2025-12-02 16:12:21] 2025-12-02 21:11:45,608 | INFO     | mean y: 3323510.5369261475
[2025-12-02 16:12:21] 2025-12-02 21:11:45,608 | INFO     | intersect: -26521856083.052475
[2025-12-02 16:12:21] 2025-12-02 21:11:45,608 | INFO     | chi2: 4.544514939375696
[2025-12-02 16:12:21] 2025-12-02 21:11:45,608 | INFO     | current chi2=4.544514939375696 (change=46.950700474229855 %)
[2025-12-02 16:12:21] 2025-12-02 21:11:45,609 | INFO     | sum of square deviations: 37838149676.54638
[2025-12-02 16:12:21] 2025-12-02 21:11:45,612 | INFO     | sum of deviations: 746058193979.9924
[2025-12-02 16:12:21] 2025-12-02 21:11:45,612 | INFO     | mean x: 1764694153.969758
[2025-12-02 16:12:21] 2025-12-02 21:11:45,612 | INFO     | mean y: 3344571.2661290322
[2025-12-02 16:12:21] 2025-12-02 21:11:45,612 | INFO     | intersect: -34791288482.73303
[2025-12-02 16:12:21] 2025-12-02 21:11:45,612 | INFO     | chi2: 2.077547197886015
[2025-12-02 16:12:21] 2025-12-02 21:11:45,612 | INFO     | current chi2=2.077547197886015 (change=54.284511645341425 %)
[2025-12-02 16:12:21] 2025-12-02 21:11:45,613 | INFO     | sum of square deviations: 36705285792.12626
[2025-12-02 16:12:21] 2025-12-02 21:11:45,616 | INFO     | sum of deviations: 731784479160.8104
[2025-12-02 16:12:21] 2025-12-02 21:11:45,616 | INFO     | mean x: 1764694001.4643586
[2025-12-02 16:12:21] 2025-12-02 21:11:45,616 | INFO     | mean y: 3342647.303462322
[2025-12-02 16:12:21] 2025-12-02 21:11:45,616 | INFO     | intersect: -35178938402.16921
[2025-12-02 16:12:21] 2025-12-02 21:11:45,616 | INFO     | chi2: 2.073362494957106
[2025-12-02 16:12:21] 2025-12-02 21:11:45,616 | INFO     | current chi2=2.073362494957106 (change=0.2014251677731974 %)
[2025-12-02 16:12:21] 2025-12-02 21:11:45,616 | INFO     | right removable region: 490
[2025-12-02 16:12:21] 2025-12-02 21:11:45,617 | INFO     | sum of square deviations: 38993427896.14767
[2025-12-02 16:12:21] 2025-12-02 21:11:45,620 | INFO     | sum of deviations: 224996725263.6813
[2025-12-02 16:12:21] 2025-12-02 21:11:45,620 | INFO     | mean x: 1764694611.4530938
[2025-12-02 16:12:21] 2025-12-02 21:11:45,620 | INFO     | mean y: 3313817.5608782433
[2025-12-02 16:12:21] 2025-12-02 21:11:45,620 | INFO     | intersect: -10179184364.56578
[2025-12-02 16:12:21] 2025-12-02 21:11:45,620 | INFO     | chi2: 6.623568582027425
[2025-12-02 16:12:21] 2025-12-02 21:11:45,620 | INFO     | current chi2=6.623568582027425 (change=22.68136900750868 %)
[2025-12-02 16:12:21] 2025-12-02 21:11:45,620 | INFO     | left removable region: 10
[2025-12-02 16:12:21] 2025-12-02 21:11:45,621 | INFO     | sum of square deviations: 34292947146.831318
[2025-12-02 16:12:21] 2025-12-02 21:11:45,623 | INFO     | sum of deviations: 555840259651.4441
[2025-12-02 16:12:21] 2025-12-02 21:11:45,623 | INFO     | mean x: 1764694275.98125
[2025-12-02 16:12:21] 2025-12-02 21:11:45,624 | INFO     | mean y: 3366032.160416667
[2025-12-02 16:12:21] 2025-12-02 21:11:45,624 | INFO     | intersect: -28599836847.04939
[2025-12-02 16:12:21] 2025-12-02 21:11:45,624 | INFO     | chi2: 0.03596988218316241
[2025-12-02 16:12:21] 2025-12-02 21:11:45,624 | INFO     | current memory leak: 16.21 B/s (using 480 data points, chi2=0.04)
[2025-12-02 16:12:21] 2025-12-02 21:11:45,625 | INFO     | could have reported an average CPU frequency of 3786 MHz (20 samples)
[2025-12-02 16:12:21] 2025-12-02 21:11:45,625 | INFO     | ..............................
[2025-12-02 16:12:21] 2025-12-02 21:11:45,625 | INFO     | . Timing measurements:
[2025-12-02 16:12:21] 2025-12-02 21:11:45,625 | INFO     | . get job = 0 s
[2025-12-02 16:12:21] 2025-12-02 21:11:45,625 | INFO     | . initial setup = 3 s
[2025-12-02 16:12:21] 2025-12-02 21:11:45,625 | INFO     | . payload setup = 23 s
[2025-12-02 16:12:21] 2025-12-02 21:11:45,625 | INFO     | . stage-in = 0 s
[2025-12-02 16:12:21] 2025-12-02 21:11:45,625 | INFO     | . payload execution = 30843 s
[2025-12-02 16:12:21] 2025-12-02 21:11:45,625 | INFO     | . stage-out = 4 s
[2025-12-02 16:12:21] 2025-12-02 21:11:45,625 | INFO     | . log creation = 1 s
[2025-12-02 16:12:21] 2025-12-02 21:11:45,625 | INFO     | ..............................
[2025-12-02 16:12:21] 2025-12-02 21:11:45,747 | INFO     | 
[2025-12-02 16:12:21] 2025-12-02 21:11:45,747 | INFO     | job summary report
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | --------------------------------------------------
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | PanDA job id: 6895335449
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | task id: 47556137
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | errors: (none)
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | pilot state: finished 
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | transexitcode: 0
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | exeerrorcode: 0
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | exeerrordiag: 
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | exitcode: 0
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | exitmsg: OK
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | cpuconsumptiontime: 143203 s
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | nevents: 1000
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | neventsw: 0
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | pid: 4099172
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | pgrp: 4099172
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | corecount: 11
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | event service: False
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | sizes: {0: 2284093, 1: 2284292, 11: 2284292, 19: 2284582, 22: 2284610, 30868: 2324412, 30869: 2324539, 30874: 2333645, 30891: 2333835}
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | --------------------------------------------------
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | 
[2025-12-02 16:12:21] 2025-12-02 21:11:45,748 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-02 16:12:21] 2025-12-02 21:11:45,783 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 16:12:21] 2025-12-02 21:11:45,784 | INFO     | job 6895335449 has completed (purged errors)
[2025-12-02 16:12:21] 2025-12-02 21:11:45,785 | INFO     | overall cleanup function is called
[2025-12-02 16:12:21] 2025-12-02 21:11:46,800 | INFO     | --- collectZombieJob: --- 10, [4099172]
[2025-12-02 16:12:21] 2025-12-02 21:11:46,801 | INFO     | zombie collector waiting for pid 4099172
[2025-12-02 16:12:21] 2025-12-02 21:11:46,801 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 16:12:21] 2025-12-02 21:11:46,801 | INFO     | collected zombie processes
[2025-12-02 16:12:21] 2025-12-02 21:11:46,801 | INFO     | will attempt to kill all subprocesses of pid=4099172
[2025-12-02 16:12:21] 2025-12-02 21:11:47,122 | INFO     | PID=4084522 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 16:12:21] 2025-12-02 21:11:47,123 | INFO     | .. there are 32 such processes running
[2025-12-02 16:12:21] 2025-12-02 21:11:47,685 | INFO     | process IDs to be killed: [4099172] (in reverse order)
[2025-12-02 16:12:21] 2025-12-02 21:11:48,046 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 16:12:21] 2025-12-02 21:11:48,046 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 16:12:21] 2025-12-02 21:11:48,088 | INFO     | did not find any defunct processes belonging to 4099172
[2025-12-02 16:12:21] 2025-12-02 21:11:48,129 | INFO     | did not find any defunct processes belonging to 4099172
[2025-12-02 16:12:21] 2025-12-02 21:11:48,138 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 16:12:21] 2025-12-02 21:11:48,138 | INFO     | ready for new job
[2025-12-02 16:12:21] 2025-12-02 21:11:48,138 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 16:12:21] 2025-12-02 21:11:48,140 | INFO     | ***************************************
[2025-12-02 16:12:21] 2025-12-02 21:11:48,141 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 16:12:21] 2025-12-02 21:11:48,141 | INFO     | ***************************************
[2025-12-02 16:12:21] 2025-12-02 21:11:48,141 | INFO     | 
[2025-12-02 16:12:21] 2025-12-02 21:11:48,163 | INFO     | architecture information:
[2025-12-02 16:12:21] 2025-12-02 21:11:48,167 | INFO     | executing command: cat /etc/os-release
[2025-12-02 16:12:21] 2025-12-02 21:11:48,206 | INFO     | cat /etc/os-release:
[2025-12-02 16:12:21] NAME="CentOS Linux"
[2025-12-02 16:12:21] VERSION="7 (Core)"
[2025-12-02 16:12:21] ID="centos"
[2025-12-02 16:12:21] ID_LIKE="rhel fedora"
[2025-12-02 16:12:21] VERSION_ID="7"
[2025-12-02 16:12:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 16:12:21] ANSI_COLOR="0;31"
[2025-12-02 16:12:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 16:12:21] HOME_URL="https://www.centos.org/"
[2025-12-02 16:12:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 16:12:21] 
[2025-12-02 16:12:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 16:12:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 16:12:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 16:12:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 16:12:21] 
[2025-12-02 16:12:21] 2025-12-02 21:11:48,207 | INFO     | ***************************************
[2025-12-02 16:12:21] 2025-12-02 21:11:48,710 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-02 16:12:21] 2025-12-02 21:11:48,766 | INFO     | sufficient remaining disk space (160978436096 B)
[2025-12-02 16:12:21] 2025-12-02 21:11:48,766 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 16:12:21] 2025-12-02 21:11:48,766 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 16:12:21] 2025-12-02 21:11:48,766 | INFO     | update_server=False
[2025-12-02 16:12:21] 2025-12-02 21:11:48,766 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 16:12:21] 2025-12-02 21:11:48,766 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 16:12:21] 2025-12-02 21:11:48,767 | INFO     | aborting loop
[2025-12-02 16:12:21] 2025-12-02 21:11:48,767 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 16:12:21] 2025-12-02 21:11:49,147 | INFO     | all data control threads have been joined
[2025-12-02 16:12:21] 2025-12-02 21:11:49,197 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 16:12:21] 2025-12-02 21:11:49,433 | INFO     | all payload control threads have been joined
[2025-12-02 16:12:21] 2025-12-02 21:11:49,772 | INFO     | [job] retrieve thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:49,779 | INFO     | [job] job monitor thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:50,155 | INFO     | [data] control thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:50,199 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:50,203 | INFO     | [payload] failed_post thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:50,245 | INFO     | all job control threads have been joined
[2025-12-02 16:12:21] 2025-12-02 21:11:50,266 | INFO     | [data] copytool_in thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:50,439 | INFO     | [payload] control thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:50,440 | INFO     | [payload] validate_post thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:50,761 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 16:12:21] 2025-12-02 21:11:50,769 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:50,813 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:51,204 | INFO     | [data] copytool_out thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:51,251 | INFO     | [job] control thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:51,263 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:51,278 | INFO     | [job] validate thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:51,767 | INFO     | [job] queue monitor thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:11:52,775 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 16:12:21] 2025-12-02 21:12:12,780 | INFO     | [monitor] cgroup control has ended
[2025-12-02 16:12:21] 2025-12-02 21:12:13,858 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140058649818944)>', '<ExcThread(monitor, started 140058078213888)>']
[2025-12-02 16:12:21] 2025-12-02 21:12:18,885 | INFO     | all workflow threads have been joined
[2025-12-02 16:12:21] 2025-12-02 21:12:18,886 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 16:12:21] 2025-12-02 21:12:18,906 | INFO     | traces error code: 0
[2025-12-02 16:12:21] 2025-12-02 21:12:18,907 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 16:12:21] 2025-12-02 21:12:19,980 | INFO     | PID=4084522 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 16:12:21] 2025-12-02 21:12:19,981 | INFO     | .. there are 32 such processes running
[2025-12-02 16:12:21] 2025-12-02 21:12:19,982 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 16:12:21] 2025-12-02 21:12:19,982 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 16:12:21] 2025-12-02 21:12:19,982 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 16:12:21] 2025-12-02 21:12:19,982 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 16:12:21] 2025-12-02 21:12:19,982 | INFO     | [monitor] control thread has ended
[2025-12-02 16:12:21] 2025-12-02 21:12:20,107 [wrapper] ==== pilot stdout END ====
[2025-12-02 16:12:21] 2025-12-02 21:12:20,110 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 16:12:21] 2025-12-02 21:12:20,112 [wrapper] pilotpid: 4084522
[2025-12-02 16:12:21] 2025-12-02 21:12:20,115 [wrapper] Pilot exit status: 0
[2025-12-02 16:12:21] 2025-12-02 21:12:20,180 [wrapper] pandaids: 6895335449
[2025-12-02 16:12:21] 2025-12-02 21:12:20,417 [wrapper] cleanup supervisor_pilot 1833775 4084523
[2025-12-02 16:12:21] 2025-12-02 21:12:20,446 [wrapper] Test setup, not cleaning
[2025-12-02 16:12:21] 2025-12-02 21:12:20,498 [wrapper] apfmon messages muted
[2025-12-02 16:12:21] 2025-12-02 21:12:20,511 [wrapper] ==== wrapper stdout END ====
[2025-12-02 16:12:21] 2025-12-02 21:12:20,532 [wrapper] ==== wrapper stderr END ====
[2025-12-02 16:12:21]  *** Error codes and diagnostics ***
[2025-12-02 16:12:21]     "exeErrorCode": 0,
[2025-12-02 16:12:21]     "exeErrorDiag": "",
[2025-12-02 16:12:21]     "pilotErrorCode": 0,
[2025-12-02 16:12:21]     "pilotErrorDiag": "",
[2025-12-02 16:12:21]  *** Listing of results directory ***
[2025-12-02 16:12:21] total 1319084
[2025-12-02 16:12:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 23:34 pilot3.tar.gz
[2025-12-02 16:12:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 23:40 queuedata.json
[2025-12-02 16:12:21] -rwx------. 1 boincer umatlas     36292 Nov 21 23:42 runpilot2-wrapper.sh
[2025-12-02 16:12:21] -rw-r--r--. 1 boincer umatlas       100 Dec  2 07:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 16:12:21] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 07:35 run_atlas
[2025-12-02 16:12:21] -rw-r--r--. 1 boincer umatlas       105 Dec  2 07:35 job.xml
[2025-12-02 16:12:21] -rw-r--r--. 2 boincer umatlas 409674587 Dec  2 07:35 EVNT.47483658._000257.pool.root.1
[2025-12-02 16:12:21] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 07:35 start_atlas.sh
[2025-12-02 16:12:21] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 07:35 shared
[2025-12-02 16:12:21] -rw-r--r--. 2 boincer umatlas    590099 Dec  2 07:35 input.tar.gz
[2025-12-02 16:12:21] -rw-r--r--. 1 boincer umatlas         0 Dec  2 07:35 boinc_lockfile
[2025-12-02 16:12:21] -rw-r--r--. 1 boincer umatlas      2785 Dec  2 07:35 pandaJob.out
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas        57 Dec  2 07:35 setup.sh.local
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas    987476 Dec  2 07:36 agis_schedconf.cvmfs.json
[2025-12-02 16:12:21] drwx------. 5 boincer umatlas      4096 Dec  2 07:36 pilot3
[2025-12-02 16:12:21] -rw-r--r--. 1 boincer umatlas       533 Dec  2 16:00 boinc_task_state.xml
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas 924738708 Dec  2 16:10 HITS.47556137._002533.pool.root.1
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas      1074 Dec  2 16:11 memory_monitor_summary.json
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas   1516240 Dec  2 16:11 agis_ddmendpoints.agis.ALL.json
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas   2093709 Dec  2 16:11 log.47556137._002533.job.log.tgz.1
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas      8639 Dec  2 16:11 heartbeat.json
[2025-12-02 16:12:21] -rw-r--r--. 1 boincer umatlas      7175 Dec  2 16:11 init_data.xml
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas       823 Dec  2 16:12 pilotlog.txt
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas        95 Dec  2 16:12 pilot_heartbeat.json
[2025-12-02 16:12:21] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 16:12 boinc_mmap_file
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas   4108582 Dec  2 16:12 log.47556137._002533.job.log.1
[2025-12-02 16:12:21] -rw-r--r--. 1 boincer umatlas        29 Dec  2 16:12 wrapper_checkpoint.txt
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas       353 Dec  2 16:12 output.list
[2025-12-02 16:12:21] -rw-r--r--. 1 boincer umatlas       620 Dec  2 16:12 runtime_log
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas   6225920 Dec  2 16:12 result.tar.gz
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas       666 Dec  2 16:12 WXzMDm7cug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnwJKDmSUK7Hn.diag
[2025-12-02 16:12:21] -rw-r--r--. 1 boincer umatlas      9345 Dec  2 16:12 runtime_log.err
[2025-12-02 16:12:21] -rw-r--r--. 1 boincer umatlas     21422 Dec  2 16:12 stderr.txt
[2025-12-02 16:12:21] HITS file was successfully produced:
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas 924738708 Dec  2 16:10 shared/HITS.pool.root.1
[2025-12-02 16:12:21]  *** Contents of shared directory: ***
[2025-12-02 16:12:21] total 1309828
[2025-12-02 16:12:21] -rw-r--r--. 2 boincer umatlas 409674587 Dec  2 07:35 ATLAS.root_0
[2025-12-02 16:12:21] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 07:35 start_atlas.sh
[2025-12-02 16:12:21] -rw-r--r--. 2 boincer umatlas    590099 Dec  2 07:35 input.tar.gz
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas 924738708 Dec  2 16:10 HITS.pool.root.1
[2025-12-02 16:12:21] -rw-------. 1 boincer umatlas   6225920 Dec  2 16:12 result.tar.gz
16:12:22 (4079026): run_atlas exited; CPU time 143209.869841
16:12:22 (4079026): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN