Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:20:04 (10357): wrapper (7.7.26015): starting
17:20:04 (10357): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 17:20:04] Arguments: --nthreads 8
[2025-12-02 17:20:04] Threads: 8
[2025-12-02 17:20:04] Checking for CVMFS
[2025-12-02 17:20:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 17:20:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 17:20:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 17:20:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 17:20:05] 2.11.0.0 4686 74421 110800 153562 2 112 3673666 4096000 4415 130560 0 12325106 99.758 5575058 552 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 17:20:05] CVMFS is ok
[2025-12-02 17:20:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 17:20:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 17:20:05] Further information can be found at the LHC@home message board.
[2025-12-02 17:20:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 17:20:05] Checking for apptainer binary...
[2025-12-02 17:20:05] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 17:20:05] apptainer is not installed, using version from CVMFS
[2025-12-02 17:20:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 17:20:05] WARNING: Environment variable TMPDIR already has value [/tmp/job_10943816/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node019
[2025-12-02 17:20:05] apptainer works
[2025-12-02 17:20:05] Set ATHENA_PROC_NUMBER=8
[2025-12-02 17:20:05] Set ATHENA_CORE_NUMBER=8
[2025-12-02 17:20:05] Starting ATLAS job with PandaID=6898413956
[2025-12-02 17:20:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10943816/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 22:36:48]  *** The last 200 lines of the pilot log: ***
[2025-12-02 22:36:48] 2025-12-02 21:35:42,019 | INFO     | .. there are 5 such processes running
[2025-12-02 22:36:48] 2025-12-02 21:35:42,091 | INFO     | monitor loop #1329: job 0:6898413956 is in state 'finished'
[2025-12-02 22:36:48] 2025-12-02 21:35:42,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 22:36:48] 2025-12-02 21:35:42,688 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 22:36:48] 2025-12-02 21:35:42,696 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2513.446390625
[2025-12-02 22:36:48] 2025-12-02 21:35:42,731 | INFO     | using path: /tmp/job_10943816/atlas/pilot/slots/0/PanDA_Pilot-6898413956/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 22:36:48] 2025-12-02 21:35:42,732 | INFO     | extracted standard info from prmon json
[2025-12-02 22:36:48] 2025-12-02 21:35:42,732 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 22:36:48] 2025-12-02 21:35:42,732 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 22:36:48] 2025-12-02 21:35:42,735 | INFO     | fitting pss+swap vs Time
[2025-12-02 22:36:48] 2025-12-02 21:35:42,735 | INFO     | sum of square deviations: 9237596457.5
[2025-12-02 22:36:48] 2025-12-02 21:35:42,736 | INFO     | sum of deviations: 147497095888.50012
[2025-12-02 22:36:48] 2025-12-02 21:35:42,736 | INFO     | mean x: 1764701855.5
[2025-12-02 22:36:48] 2025-12-02 21:35:42,736 | INFO     | mean y: 2903329.125806452
[2025-12-02 22:36:48] 2025-12-02 21:35:42,736 | INFO     | intersect: -28174166322.36017
[2025-12-02 22:36:48] 2025-12-02 21:35:42,737 | INFO     | chi2: 2.739337732903786
[2025-12-02 22:36:48] 2025-12-02 21:35:42,737 | INFO     | sum of square deviations: 8797783560.0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,738 | INFO     | sum of deviations: 195046301716.0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,738 | INFO     | mean x: 1764701703.0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,738 | INFO     | mean y: 2919681.6885245903
[2025-12-02 22:36:48] 2025-12-02 21:35:42,738 | INFO     | intersect: -39120404784.60205
[2025-12-02 22:36:48] 2025-12-02 21:35:42,738 | INFO     | chi2: 1.4910579767810748
[2025-12-02 22:36:48] 2025-12-02 21:35:42,738 | INFO     | current chi2=1.4910579767810748 (change=45.56866943162552 %)
[2025-12-02 22:36:48] 2025-12-02 21:35:42,739 | INFO     | sum of square deviations: 8372156975.0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,740 | INFO     | sum of deviations: 188890734650.49997
[2025-12-02 22:36:48] 2025-12-02 21:35:42,740 | INFO     | mean x: 1764701550.5
[2025-12-02 22:36:48] 2025-12-02 21:35:42,740 | INFO     | mean y: 2917475.89
[2025-12-02 22:36:48] 2025-12-02 21:35:42,740 | INFO     | intersect: -39811884528.92088
[2025-12-02 22:36:48] 2025-12-02 21:35:42,740 | INFO     | chi2: 1.4900862005403102
[2025-12-02 22:36:48] 2025-12-02 21:35:42,740 | INFO     | current chi2=1.4900862005403102 (change=0.06517360531228301 %)
[2025-12-02 22:36:48] 2025-12-02 21:35:42,740 | INFO     | right removable region: 299
[2025-12-02 22:36:48] 2025-12-02 21:35:42,741 | INFO     | sum of square deviations: 8797783560.0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,742 | INFO     | sum of deviations: 88633305792.99997
[2025-12-02 22:36:48] 2025-12-02 21:35:42,742 | INFO     | mean x: 1764702008.0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,742 | INFO     | mean y: 2923604.7606557375
[2025-12-02 22:36:48] 2025-12-02 21:35:42,742 | INFO     | intersect: -17775573859.046593
[2025-12-02 22:36:48] 2025-12-02 21:35:42,742 | INFO     | chi2: 1.297285439237983
[2025-12-02 22:36:48] 2025-12-02 21:35:42,742 | INFO     | current chi2=1.297285439237983 (change=52.64236958971763 %)
[2025-12-02 22:36:48] 2025-12-02 21:35:42,742 | INFO     | sum of square deviations: 8372156975.0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,744 | INFO     | sum of deviations: 76286408948.00002
[2025-12-02 22:36:48] 2025-12-02 21:35:42,744 | INFO     | mean x: 1764702160.5
[2025-12-02 22:36:48] 2025-12-02 21:35:42,744 | INFO     | mean y: 2928024.8666666667
[2025-12-02 22:36:48] 2025-12-02 21:35:42,744 | INFO     | intersect: -16076893589.720554
[2025-12-02 22:36:48] 2025-12-02 21:35:42,744 | INFO     | chi2: 1.282117799885557
[2025-12-02 22:36:48] 2025-12-02 21:35:42,744 | INFO     | current chi2=1.282117799885557 (change=1.169182887101176 %)
[2025-12-02 22:36:48] 2025-12-02 21:35:42,744 | INFO     | left removable region: 20
[2025-12-02 22:36:48] 2025-12-02 21:35:42,744 | INFO     | sum of square deviations: 6734191380.0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,745 | INFO     | sum of deviations: 99803469450.0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,745 | INFO     | mean x: 1764702130.0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,745 | INFO     | mean y: 2950414.2508960576
[2025-12-02 22:36:48] 2025-12-02 21:35:42,745 | INFO     | intersect: -26150656630.965706
[2025-12-02 22:36:48] 2025-12-02 21:35:42,746 | INFO     | chi2: 0.013290670187716725
[2025-12-02 22:36:48] 2025-12-02 21:35:42,746 | INFO     | current memory leak: 14.82 B/s (using 279 data points, chi2=0.01)
[2025-12-02 22:36:48] 2025-12-02 21:35:42,746 | INFO     | could have reported an average CPU frequency of 2528 MHz (14 samples)
[2025-12-02 22:36:48] 2025-12-02 21:35:42,746 | INFO     | ..............................
[2025-12-02 22:36:48] 2025-12-02 21:35:42,746 | INFO     | . Timing measurements:
[2025-12-02 22:36:48] 2025-12-02 21:35:42,746 | INFO     | . get job = 0 s
[2025-12-02 22:36:48] 2025-12-02 21:35:42,746 | INFO     | . initial setup = 1 s
[2025-12-02 22:36:48] 2025-12-02 21:35:42,746 | INFO     | . payload setup = 3 s
[2025-12-02 22:36:48] 2025-12-02 21:35:42,746 | INFO     | . stage-in = 0 s
[2025-12-02 22:36:48] 2025-12-02 21:35:42,746 | INFO     | . payload execution = 18907 s
[2025-12-02 22:36:48] 2025-12-02 21:35:42,746 | INFO     | . stage-out = 1 s
[2025-12-02 22:36:48] 2025-12-02 21:35:42,746 | INFO     | . log creation = 0 s
[2025-12-02 22:36:48] 2025-12-02 21:35:42,746 | INFO     | ..............................
[2025-12-02 22:36:48] 2025-12-02 21:35:42,796 | INFO     | 
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | job summary report
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | --------------------------------------------------
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | PanDA job id: 6898413956
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | task id: 47556173
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | errors: (none)
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | pilot state: finished 
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | transexitcode: 0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | exeerrorcode: 0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | exeerrordiag: 
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | exitcode: 0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | exitmsg: OK
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | cpuconsumptiontime: 146321 s
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | nevents: 1000
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | neventsw: 0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | pid: 23970
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | pgrp: 23970
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | corecount: 8
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | event service: False
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | sizes: {0: 2284442, 1: 2284442, 3: 2284732, 11: 2284760, 18914: 2318125, 18916: 2327333, 18918: 2327523}
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | --------------------------------------------------
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | 
[2025-12-02 22:36:48] 2025-12-02 21:35:42,797 | INFO     | executing command: ls -lF /tmp/job_10943816/atlas/pilot/slots/0
[2025-12-02 22:36:48] 2025-12-02 21:35:42,807 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,807 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,807 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | job 6898413956 has completed (purged errors)
[2025-12-02 22:36:48] 2025-12-02 21:35:42,808 | INFO     | overall cleanup function is called
[2025-12-02 22:36:48] 2025-12-02 21:35:43,816 | INFO     | --- collectZombieJob: --- 10, [23970]
[2025-12-02 22:36:48] 2025-12-02 21:35:43,816 | INFO     | zombie collector waiting for pid 23970
[2025-12-02 22:36:48] 2025-12-02 21:35:43,816 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 22:36:48] 2025-12-02 21:35:43,816 | INFO     | collected zombie processes
[2025-12-02 22:36:48] 2025-12-02 21:35:43,816 | INFO     | will attempt to kill all subprocesses of pid=23970
[2025-12-02 22:36:48] 2025-12-02 21:35:43,999 | INFO     | process IDs to be killed: [23970] (in reverse order)
[2025-12-02 22:36:48] 2025-12-02 21:35:44,057 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 22:36:48] 2025-12-02 21:35:44,057 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 22:36:48] 2025-12-02 21:35:44,063 | INFO     | did not find any defunct processes belonging to 23970
[2025-12-02 22:36:48] 2025-12-02 21:35:44,069 | INFO     | did not find any defunct processes belonging to 23970
[2025-12-02 22:36:48] 2025-12-02 21:35:44,069 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 22:36:48] 2025-12-02 21:35:44,069 | INFO     | ready for new job
[2025-12-02 22:36:48] 2025-12-02 21:35:44,069 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 22:36:48] 2025-12-02 21:35:44,070 | INFO     | ***************************************
[2025-12-02 22:36:48] 2025-12-02 21:35:44,070 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 22:36:48] 2025-12-02 21:35:44,070 | INFO     | ***************************************
[2025-12-02 22:36:48] 2025-12-02 21:35:44,070 | INFO     | 
[2025-12-02 22:36:48] 2025-12-02 21:35:44,087 | INFO     | architecture information:
[2025-12-02 22:36:48] 2025-12-02 21:35:44,087 | INFO     | executing command: cat /etc/os-release
[2025-12-02 22:36:48] 2025-12-02 21:35:44,094 | INFO     | cat /etc/os-release:
[2025-12-02 22:36:48] NAME="CentOS Linux"
[2025-12-02 22:36:48] VERSION="7 (Core)"
[2025-12-02 22:36:48] ID="centos"
[2025-12-02 22:36:48] ID_LIKE="rhel fedora"
[2025-12-02 22:36:48] VERSION_ID="7"
[2025-12-02 22:36:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 22:36:48] ANSI_COLOR="0;31"
[2025-12-02 22:36:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 22:36:48] HOME_URL="https://www.centos.org/"
[2025-12-02 22:36:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 22:36:48] 
[2025-12-02 22:36:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 22:36:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 22:36:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 22:36:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 22:36:48] 
[2025-12-02 22:36:48] 2025-12-02 21:35:44,095 | INFO     | ***************************************
[2025-12-02 22:36:48] 2025-12-02 21:35:44,597 | INFO     | executing command: df -mP /tmp/job_10943816/atlas/pilot/slots/0
[2025-12-02 22:36:48] 2025-12-02 21:35:44,605 | INFO     | sufficient remaining disk space (219953496064 B)
[2025-12-02 22:36:48] 2025-12-02 21:35:44,605 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 22:36:48] 2025-12-02 21:35:44,605 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 22:36:48] 2025-12-02 21:35:44,605 | INFO     | update_server=False
[2025-12-02 22:36:48] 2025-12-02 21:35:44,605 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 22:36:48] 2025-12-02 21:35:44,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 22:36:48] 2025-12-02 21:35:44,922 | INFO     | all payload control threads have been joined
[2025-12-02 22:36:48] 2025-12-02 21:35:44,922 | INFO     | all data control threads have been joined
[2025-12-02 22:36:48] 2025-12-02 21:35:45,386 | INFO     | all job control threads have been joined
[2025-12-02 22:36:48] 2025-12-02 21:35:45,599 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 22:36:48] 2025-12-02 21:35:45,599 | INFO     | aborting loop
[2025-12-02 22:36:48] 2025-12-02 21:35:45,610 | INFO     | [job] retrieve thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:45,610 | INFO     | [job] queue monitor thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:45,736 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 22:36:48] 2025-12-02 21:35:45,927 | INFO     | [payload] control thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:45,927 | INFO     | [data] control thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:45,942 | INFO     | [data] copytool_in thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:46,013 | INFO     | [job] validate thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:46,059 | INFO     | [payload] validate_post thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:46,175 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:46,254 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:46,285 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 22:36:48] 2025-12-02 21:35:46,391 | INFO     | [job] control thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:46,454 | INFO     | [payload] failed_post thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:46,604 | INFO     | [job] job monitor thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:46,607 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:47,108 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:47,741 | INFO     | [data] copytool_out thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:35:50,290 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 22:36:48] 2025-12-02 21:36:14,296 | INFO     | PID=15498 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 22:36:48] 2025-12-02 21:36:14,296 | INFO     | .. there are 5 such processes running
[2025-12-02 22:36:48] 2025-12-02 21:36:14,296 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 22:36:48] 2025-12-02 21:36:14,296 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 22:36:48] 2025-12-02 21:36:14,296 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 22:36:48] 2025-12-02 21:36:42,943 | INFO     | [monitor] cgroup control has ended
[2025-12-02 22:36:48] 2025-12-02 21:36:43,083 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-02 22:36:48] 2025-12-02 21:36:43,438 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 22:36:48] 2025-12-02 21:36:43,438 | INFO     | [monitor] control thread has ended
[2025-12-02 22:36:48] 2025-12-02 21:36:48,108 | INFO     | all workflow threads have been joined
[2025-12-02 22:36:48] 2025-12-02 21:36:48,109 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 22:36:48] 2025-12-02 21:36:48,109 | INFO     | traces error code: 0
[2025-12-02 22:36:48] 2025-12-02 21:36:48,109 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 22:36:48] 2025-12-02 21:36:48,167 [wrapper] ==== pilot stdout END ====
[2025-12-02 22:36:48] 2025-12-02 21:36:48,169 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 22:36:48] 2025-12-02 21:36:48,170 [wrapper] pilotpid: 15498
[2025-12-02 22:36:48] 2025-12-02 21:36:48,172 [wrapper] Pilot exit status: 0
[2025-12-02 22:36:48] 2025-12-02 21:36:48,176 [wrapper] pandaids: 6898413956
[2025-12-02 22:36:48] 2025-12-02 21:36:48,213 [wrapper] cleanup supervisor_pilot 12832 15499
[2025-12-02 22:36:48] 2025-12-02 21:36:48,215 [wrapper] Test setup, not cleaning
[2025-12-02 22:36:48] 2025-12-02 21:36:48,216 [wrapper] apfmon messages muted
[2025-12-02 22:36:48] 2025-12-02 21:36:48,217 [wrapper] ==== wrapper stdout END ====
[2025-12-02 22:36:48] 2025-12-02 21:36:48,219 [wrapper] ==== wrapper stderr END ====
[2025-12-02 22:36:48]  *** Error codes and diagnostics ***
[2025-12-02 22:36:48]     "exeErrorCode": 0,
[2025-12-02 22:36:48]     "exeErrorDiag": "",
[2025-12-02 22:36:48]     "pilotErrorCode": 0,
[2025-12-02 22:36:48]     "pilotErrorDiag": "",
[2025-12-02 22:36:48]  *** Listing of results directory ***
[2025-12-02 22:36:48] total 1321224
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user    576529 Nov 26 17:12 pilot3.tar.gz
[2025-12-02 22:36:48] -rwx------ 1 mf493845 unix-user     36292 Nov 26 17:36 runpilot2-wrapper.sh
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user      5112 Nov 26 17:37 queuedata.json
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user       100 Dec  2 15:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 22:36:48] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 15:34 run_atlas
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user       105 Dec  2 15:34 job.xml
[2025-12-02 22:36:48] -rw-r--r-- 2 mf493845 unix-user 413326207 Dec  2 17:20 EVNT.47483658._003215.pool.root.1
[2025-12-02 22:36:48] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 17:20 start_atlas.sh
[2025-12-02 22:36:48] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 17:20 shared
[2025-12-02 22:36:48] -rw-r--r-- 2 mf493845 unix-user    590101 Dec  2 17:20 input.tar.gz
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user      6390 Dec  2 17:20 init_data.xml
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user         0 Dec  2 17:20 boinc_setup_complete
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user      8192 Dec  2 17:20 boinc_mmap_file
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user         0 Dec  2 17:20 boinc_lockfile
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user      2787 Dec  2 17:20 pandaJob.out
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user    988852 Dec  2 17:20 agis_schedconf.cvmfs.json
[2025-12-02 22:36:48] drwx------ 5 mf493845 unix-user       440 Dec  2 17:20 pilot3
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user 927216270 Dec  2 22:35 HITS.47556173._001712.pool.root.1
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user      1033 Dec  2 22:35 memory_monitor_summary.json
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user   1516240 Dec  2 22:35 agis_ddmendpoints.agis.ALL.json
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user        95 Dec  2 22:35 pilot_heartbeat.json
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user   1600641 Dec  2 22:35 log.47556173._001712.job.log.tgz.1
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user      8589 Dec  2 22:35 heartbeat.json
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user      4835 Dec  2 22:36 pilotlog.txt
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user   2652845 Dec  2 22:36 log.47556173._001712.job.log.1
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user       353 Dec  2 22:36 output.list
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user       620 Dec  2 22:36 runtime_log
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user   4270080 Dec  2 22:36 result.tar.gz
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user      9221 Dec  2 22:36 runtime_log.err
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user       650 Dec  2 22:36 PXCMDmNgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmp8JKDmWedALo.diag
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user     21679 Dec  2 22:36 stderr.txt
[2025-12-02 22:36:48] HITS file was successfully produced:
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user 927216270 Dec  2 22:35 shared/HITS.pool.root.1
[2025-12-02 22:36:48]  *** Contents of shared directory: ***
[2025-12-02 22:36:48] total 1313896
[2025-12-02 22:36:48] -rw-r--r-- 2 mf493845 unix-user 413326207 Dec  2 17:20 ATLAS.root_0
[2025-12-02 22:36:48] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 17:20 start_atlas.sh
[2025-12-02 22:36:48] -rw-r--r-- 2 mf493845 unix-user    590101 Dec  2 17:20 input.tar.gz
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user 927216270 Dec  2 22:35 HITS.pool.root.1
[2025-12-02 22:36:48] -rw------- 1 mf493845 unix-user   4270080 Dec  2 22:36 result.tar.gz
22:36:50 (10357): run_atlas exited; CPU time 146778.597480
22:36:50 (10357): called boinc_finish(0)

</stderr_txt>
]]>

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