Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
16:41:34 (503): wrapper (7.7.26015): starting
16:41:34 (503): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 16:41:34] Arguments: --nthreads 8
[2025-12-02 16:41:34] Threads: 8
[2025-12-02 16:41:34] Checking for CVMFS
[2025-12-02 16:41:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 16:41:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 16:41:34] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 16:41:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 16:41:34] 2.11.0.0 7894 74491 116676 153560 0 110 3698663 4096000 4587 130560 2 11419257 99.720 5685308 544 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 16:41:34] CVMFS is ok
[2025-12-02 16:41:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 16:41:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 16:41:34] Further information can be found at the LHC@home message board.
[2025-12-02 16:41:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 16:41:34] Checking for apptainer binary...
[2025-12-02 16:41:34] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 16:41:34] apptainer is not installed, using version from CVMFS
[2025-12-02 16:41:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 16:41:35] WARNING: Environment variable TMPDIR already has value [/tmp/job_10943776/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node075
[2025-12-02 16:41:35] apptainer works
[2025-12-02 16:41:35] Set ATHENA_PROC_NUMBER=8
[2025-12-02 16:41:35] Set ATHENA_CORE_NUMBER=8
[2025-12-02 16:41:35] Starting ATLAS job with PandaID=6901292301
[2025-12-02 16:41:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10943776/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 20:27:08]  *** The last 200 lines of the pilot log: ***
[2025-12-02 20:27:08] 2025-12-02 19:26:32,313 | INFO     | time since job start (13492s) is within the limit (172800.0s)
[2025-12-02 20:27:08] 2025-12-02 19:26:32,665 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 20:27:08] 2025-12-02 19:26:32,669 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2720.978203125
[2025-12-02 20:27:08] 2025-12-02 19:26:32,674 | INFO     | using path: /tmp/job_10943776/atlas/pilot/slots/0/PanDA_Pilot-6901292301/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 20:27:08] 2025-12-02 19:26:32,674 | INFO     | extracted standard info from prmon json
[2025-12-02 20:27:08] 2025-12-02 19:26:32,674 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 20:27:08] 2025-12-02 19:26:32,674 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 20:27:08] 2025-12-02 19:26:32,677 | INFO     | fitting pss+swap vs Time
[2025-12-02 20:27:08] 2025-12-02 19:26:32,677 | INFO     | sum of square deviations: 3346927870.0
[2025-12-02 20:27:08] 2025-12-02 19:26:32,677 | INFO     | sum of deviations: 89882551755.00002
[2025-12-02 20:27:08] 2025-12-02 19:26:32,678 | INFO     | mean x: 1764696829.0
[2025-12-02 20:27:08] 2025-12-02 19:26:32,678 | INFO     | mean y: 3359245.104072398
[2025-12-02 20:27:08] 2025-12-02 19:26:32,678 | INFO     | intersect: -47387997911.47454
[2025-12-02 20:27:08] 2025-12-02 19:26:32,678 | INFO     | chi2: 3.4948051372365136
[2025-12-02 20:27:08] 2025-12-02 19:26:32,678 | INFO     | sum of square deviations: 3124858590.0
[2025-12-02 20:27:08] 2025-12-02 19:26:32,679 | INFO     | sum of deviations: 138680559617.00006
[2025-12-02 20:27:08] 2025-12-02 19:26:32,679 | INFO     | mean x: 1764696676.5
[2025-12-02 20:27:08] 2025-12-02 19:26:32,679 | INFO     | mean y: 3392426.592592593
[2025-12-02 20:27:08] 2025-12-02 19:26:32,679 | INFO     | intersect: -78313470753.8562
[2025-12-02 20:27:08] 2025-12-02 19:26:32,679 | INFO     | chi2: 1.7806176525393687
[2025-12-02 20:27:08] 2025-12-02 19:26:32,679 | INFO     | current chi2=1.7806176525393687 (change=49.04958695501471 %)
[2025-12-02 20:27:08] 2025-12-02 19:26:32,679 | INFO     | sum of square deviations: 2912836010.0
[2025-12-02 20:27:08] 2025-12-02 19:26:32,680 | INFO     | sum of deviations: 133030219774.99995
[2025-12-02 20:27:08] 2025-12-02 19:26:32,680 | INFO     | mean x: 1764696524.0
[2025-12-02 20:27:08] 2025-12-02 19:26:32,680 | INFO     | mean y: 3388362.483412322
[2025-12-02 20:27:08] 2025-12-02 19:26:32,680 | INFO     | intersect: -80590907237.39091
[2025-12-02 20:27:08] 2025-12-02 19:26:32,680 | INFO     | chi2: 1.7794703609357518
[2025-12-02 20:27:08] 2025-12-02 19:26:32,680 | INFO     | current chi2=1.7794703609357518 (change=0.06443222676022818 %)
[2025-12-02 20:27:08] 2025-12-02 19:26:32,680 | INFO     | right removable region: 210
[2025-12-02 20:27:08] 2025-12-02 19:26:32,680 | INFO     | sum of square deviations: 3124858590.0
[2025-12-02 20:27:08] 2025-12-02 19:26:32,681 | INFO     | sum of deviations: 34515073984.999985
[2025-12-02 20:27:08] 2025-12-02 19:26:32,681 | INFO     | mean x: 1764696981.5
[2025-12-02 20:27:08] 2025-12-02 19:26:32,681 | INFO     | mean y: 3396938.685185185
[2025-12-02 20:27:08] 2025-12-02 19:26:32,681 | INFO     | intersect: -19488252082.64818
[2025-12-02 20:27:08] 2025-12-02 19:26:32,681 | INFO     | chi2: 1.7765887644014708
[2025-12-02 20:27:08] 2025-12-02 19:26:32,681 | INFO     | current chi2=1.7765887644014708 (change=49.16486915186657 %)
[2025-12-02 20:27:08] 2025-12-02 19:26:32,681 | INFO     | sum of square deviations: 2912836010.0
[2025-12-02 20:27:08] 2025-12-02 19:26:32,682 | INFO     | sum of deviations: 24830124115.00002
[2025-12-02 20:27:08] 2025-12-02 19:26:32,682 | INFO     | mean x: 1764697134.0
[2025-12-02 20:27:08] 2025-12-02 19:26:32,682 | INFO     | mean y: 3403897.5829383885
[2025-12-02 20:27:08] 2025-12-02 19:26:32,682 | INFO     | intersect: -15039546928.407713
[2025-12-02 20:27:08] 2025-12-02 19:26:32,682 | INFO     | chi2: 1.7624250113345137
[2025-12-02 20:27:08] 2025-12-02 19:26:32,682 | INFO     | current chi2=1.7624250113345137 (change=0.7972443229837098 %)
[2025-12-02 20:27:08] 2025-12-02 19:26:32,683 | INFO     | left removable region: 20
[2025-12-02 20:27:08] 2025-12-02 19:26:32,683 | INFO     | sum of square deviations: 2126802667.5
[2025-12-02 20:27:08] 2025-12-02 19:26:32,683 | INFO     | sum of deviations: 53887010911.50005
[2025-12-02 20:27:08] 2025-12-02 19:26:32,683 | INFO     | mean x: 1764697103.5
[2025-12-02 20:27:08] 2025-12-02 19:26:32,683 | INFO     | mean y: 3448378.247368421
[2025-12-02 20:27:08] 2025-12-02 19:26:32,683 | INFO     | intersect: -44708857810.26132
[2025-12-02 20:27:08] 2025-12-02 19:26:32,683 | INFO     | chi2: 0.006759843369607138
[2025-12-02 20:27:08] 2025-12-02 19:26:32,684 | INFO     | current memory leak: 25.34 B/s (using 190 data points, chi2=0.01)
[2025-12-02 20:27:08] 2025-12-02 19:26:32,684 | INFO     | could have reported an average CPU frequency of 3034 MHz (11 samples)
[2025-12-02 20:27:08] 2025-12-02 19:26:32,684 | INFO     | ..............................
[2025-12-02 20:27:08] 2025-12-02 19:26:32,684 | INFO     | . Timing measurements:
[2025-12-02 20:27:08] 2025-12-02 19:26:32,684 | INFO     | . get job = 0 s
[2025-12-02 20:27:08] 2025-12-02 19:26:32,684 | INFO     | . initial setup = 1 s
[2025-12-02 20:27:08] 2025-12-02 19:26:32,684 | INFO     | . payload setup = 4 s
[2025-12-02 20:27:08] 2025-12-02 19:26:32,684 | INFO     | . stage-in = 0 s
[2025-12-02 20:27:08] 2025-12-02 19:26:32,684 | INFO     | . payload execution = 13469 s
[2025-12-02 20:27:08] 2025-12-02 19:26:32,684 | INFO     | . stage-out = 1 s
[2025-12-02 20:27:08] 2025-12-02 19:26:32,684 | INFO     | . log creation = 0 s
[2025-12-02 20:27:08] 2025-12-02 19:26:32,684 | INFO     | ..............................
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | 
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | job summary report
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | --------------------------------------------------
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | PanDA job id: 6901292301
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | task id: 47531111
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | errors: (none)
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | pilot state: finished 
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | transexitcode: 0
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | exeerrorcode: 0
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | exeerrordiag: 
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | exitcode: 0
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | exitmsg: OK
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | cpuconsumptiontime: 101640 s
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | nevents: 1000
[2025-12-02 20:27:08] 2025-12-02 19:26:33,019 | INFO     | neventsw: 0
[2025-12-02 20:27:08] 2025-12-02 19:26:33,020 | INFO     | pid: 12007
[2025-12-02 20:27:08] 2025-12-02 19:26:33,020 | INFO     | pgrp: 12007
[2025-12-02 20:27:08] 2025-12-02 19:26:33,020 | INFO     | corecount: 8
[2025-12-02 20:27:08] 2025-12-02 19:26:33,020 | INFO     | event service: False
[2025-12-02 20:27:08] 2025-12-02 19:26:33,020 | INFO     | sizes: {0: 2283622, 1: 2284604, 3: 2284866, 11: 2284894, 13477: 2334816, 13478: 2344024, 13480: 2344214}
[2025-12-02 20:27:08] 2025-12-02 19:26:33,020 | INFO     | --------------------------------------------------
[2025-12-02 20:27:08] 2025-12-02 19:26:33,020 | INFO     | 
[2025-12-02 20:27:08] 2025-12-02 19:26:33,020 | INFO     | executing command: ls -lF /tmp/job_10943776/atlas/pilot/slots/0
[2025-12-02 20:27:08] 2025-12-02 19:26:33,028 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,028 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | job 6901292301 has completed (purged errors)
[2025-12-02 20:27:08] 2025-12-02 19:26:33,029 | INFO     | overall cleanup function is called
[2025-12-02 20:27:08] 2025-12-02 19:26:34,037 | INFO     | --- collectZombieJob: --- 10, [12007]
[2025-12-02 20:27:08] 2025-12-02 19:26:34,037 | INFO     | zombie collector waiting for pid 12007
[2025-12-02 20:27:08] 2025-12-02 19:26:34,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 20:27:08] 2025-12-02 19:26:34,037 | INFO     | collected zombie processes
[2025-12-02 20:27:08] 2025-12-02 19:26:34,037 | INFO     | will attempt to kill all subprocesses of pid=12007
[2025-12-02 20:27:08] 2025-12-02 19:26:34,144 | INFO     | process IDs to be killed: [12007] (in reverse order)
[2025-12-02 20:27:08] 2025-12-02 19:26:34,184 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 20:27:08] 2025-12-02 19:26:34,184 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 20:27:08] 2025-12-02 19:26:34,188 | INFO     | did not find any defunct processes belonging to 12007
[2025-12-02 20:27:08] 2025-12-02 19:26:34,191 | INFO     | did not find any defunct processes belonging to 12007
[2025-12-02 20:27:08] 2025-12-02 19:26:34,192 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 20:27:08] 2025-12-02 19:26:34,192 | INFO     | ready for new job
[2025-12-02 20:27:08] 2025-12-02 19:26:34,192 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 20:27:08] 2025-12-02 19:26:34,193 | INFO     | ***************************************
[2025-12-02 20:27:08] 2025-12-02 19:26:34,193 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 20:27:08] 2025-12-02 19:26:34,193 | INFO     | ***************************************
[2025-12-02 20:27:08] 2025-12-02 19:26:34,193 | INFO     | 
[2025-12-02 20:27:08] 2025-12-02 19:26:34,206 | INFO     | architecture information:
[2025-12-02 20:27:08] 2025-12-02 19:26:34,206 | INFO     | executing command: cat /etc/os-release
[2025-12-02 20:27:08] 2025-12-02 19:26:34,212 | INFO     | cat /etc/os-release:
[2025-12-02 20:27:08] NAME="CentOS Linux"
[2025-12-02 20:27:08] VERSION="7 (Core)"
[2025-12-02 20:27:08] ID="centos"
[2025-12-02 20:27:08] ID_LIKE="rhel fedora"
[2025-12-02 20:27:08] VERSION_ID="7"
[2025-12-02 20:27:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 20:27:08] ANSI_COLOR="0;31"
[2025-12-02 20:27:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 20:27:08] HOME_URL="https://www.centos.org/"
[2025-12-02 20:27:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 20:27:08] 
[2025-12-02 20:27:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 20:27:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 20:27:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 20:27:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 20:27:08] 
[2025-12-02 20:27:08] 2025-12-02 19:26:34,212 | INFO     | ***************************************
[2025-12-02 20:27:08] 2025-12-02 19:26:34,715 | INFO     | executing command: df -mP /tmp/job_10943776/atlas/pilot/slots/0
[2025-12-02 20:27:08] 2025-12-02 19:26:34,721 | INFO     | sufficient remaining disk space (221606051840 B)
[2025-12-02 20:27:08] 2025-12-02 19:26:34,721 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 20:27:08] 2025-12-02 19:26:34,721 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 20:27:08] 2025-12-02 19:26:34,721 | INFO     | update_server=False
[2025-12-02 20:27:08] 2025-12-02 19:26:34,721 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 20:27:08] 2025-12-02 19:26:34,721 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:27:08] 2025-12-02 19:26:34,721 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:27:08] 2025-12-02 19:26:34,721 | INFO     | aborting loop
[2025-12-02 20:27:08] 2025-12-02 19:26:35,265 | INFO     | job.realtimelogging is not enabled
[2025-12-02 20:27:08] 2025-12-02 19:26:35,297 | INFO     | all data control threads have been joined
[2025-12-02 20:27:08] 2025-12-02 19:26:35,726 | INFO     | [job] retrieve thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:35,726 | INFO     | [job] queue monitor thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:35,726 | INFO     | [job] job monitor thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:35,746 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:35,786 | INFO     | all payload control threads have been joined
[2025-12-02 20:27:08] 2025-12-02 19:26:35,977 | INFO     | [job] validate thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:36,079 | INFO     | [payload] failed_post thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:36,080 | INFO     | [data] copytool_in thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:36,106 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 20:27:08] 2025-12-02 19:26:36,189 | INFO     | all job control threads have been joined
[2025-12-02 20:27:08] 2025-12-02 19:26:36,270 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:36,276 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:36,303 | INFO     | [data] control thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:36,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 20:27:08] 2025-12-02 19:26:36,791 | INFO     | [payload] control thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:36,876 | INFO     | [payload] validate_post thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:37,166 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:37,194 | INFO     | [job] control thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:38,111 | INFO     | [data] copytool_out thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:40,654 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 20:27:08] 2025-12-02 19:26:41,516 [wrapper] supervise_pilot (15 min periods counter: 16)
[2025-12-02 20:27:08] 2025-12-02 19:27:02,134 | INFO     | [monitor] cgroup control has ended
[2025-12-02 20:27:08] 2025-12-02 19:27:03,751 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-02 20:27:08] 2025-12-02 19:27:05,509 | INFO     | PID=4398 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 20:27:08] 2025-12-02 19:27:05,509 | INFO     | .. there are 4 such processes running
[2025-12-02 20:27:08] 2025-12-02 19:27:05,509 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 20:27:08] 2025-12-02 19:27:05,509 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 20:27:08] 2025-12-02 19:27:05,509 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 20:27:08] 2025-12-02 19:27:05,509 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 20:27:08] 2025-12-02 19:27:05,509 | INFO     | [monitor] control thread has ended
[2025-12-02 20:27:08] 2025-12-02 19:27:08,776 | INFO     | all workflow threads have been joined
[2025-12-02 20:27:08] 2025-12-02 19:27:08,777 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 20:27:08] 2025-12-02 19:27:08,777 | INFO     | traces error code: 0
[2025-12-02 20:27:08] 2025-12-02 19:27:08,777 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 20:27:08] 2025-12-02 19:27:08,829 [wrapper] ==== pilot stdout END ====
[2025-12-02 20:27:08] 2025-12-02 19:27:08,830 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 20:27:08] 2025-12-02 19:27:08,831 [wrapper] pilotpid: 4398
[2025-12-02 20:27:08] 2025-12-02 19:27:08,832 [wrapper] Pilot exit status: 0
[2025-12-02 20:27:08] 2025-12-02 19:27:08,835 [wrapper] pandaids: 6901292301
[2025-12-02 20:27:08] 2025-12-02 19:27:08,858 [wrapper] cleanup supervisor_pilot 10473 4399
[2025-12-02 20:27:08] 2025-12-02 19:27:08,859 [wrapper] Test setup, not cleaning
[2025-12-02 20:27:08] 2025-12-02 19:27:08,860 [wrapper] apfmon messages muted
[2025-12-02 20:27:08] 2025-12-02 19:27:08,861 [wrapper] ==== wrapper stdout END ====
[2025-12-02 20:27:08] 2025-12-02 19:27:08,862 [wrapper] ==== wrapper stderr END ====
[2025-12-02 20:27:08]  *** Error codes and diagnostics ***
[2025-12-02 20:27:08]     "exeErrorCode": 0,
[2025-12-02 20:27:08]     "exeErrorDiag": "",
[2025-12-02 20:27:08]     "pilotErrorCode": 0,
[2025-12-02 20:27:08]     "pilotErrorDiag": "",
[2025-12-02 20:27:08]  *** Listing of results directory ***
[2025-12-02 20:27:09] total 1041892
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-02 20:27:09] -rwx------ 1 mf493845 unix-user     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user      5112 Nov 29 10:26 queuedata.json
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user       100 Dec  2 15:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 20:27:09] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 15:06 run_atlas
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user       105 Dec  2 15:06 job.xml
[2025-12-02 20:27:09] -rw-r--r-- 2 mf493845 unix-user    590123 Dec  2 16:41 input.tar.gz
[2025-12-02 20:27:09] -rw-r--r-- 2 mf493845 unix-user 373940732 Dec  2 16:41 EVNT.47531104._000091.pool.root.1
[2025-12-02 20:27:09] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 16:41 start_atlas.sh
[2025-12-02 20:27:09] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 16:41 shared
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user      6391 Dec  2 16:41 init_data.xml
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user         0 Dec  2 16:41 boinc_setup_complete
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user      8192 Dec  2 16:41 boinc_mmap_file
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user         0 Dec  2 16:41 boinc_lockfile
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user      2879 Dec  2 16:41 pandaJob.out
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user    989202 Dec  2 16:41 agis_schedconf.cvmfs.json
[2025-12-02 20:27:09] drwx------ 5 mf493845 unix-user       440 Dec  2 16:41 pilot3
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user        95 Dec  2 20:26 pilot_heartbeat.json
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user 681713197 Dec  2 20:26 HITS.47531111._000899.pool.root.1
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user      1026 Dec  2 20:26 memory_monitor_summary.json
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user   1516240 Dec  2 20:26 agis_ddmendpoints.agis.ALL.json
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user   1619258 Dec  2 20:26 log.47531111._000899.job.log.tgz.1
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user     27489 Dec  2 20:26 heartbeat.json
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user      4906 Dec  2 20:27 pilotlog.txt
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user   2042613 Dec  2 20:27 log.47531111._000899.job.log.1
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user       353 Dec  2 20:27 output.list
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user       620 Dec  2 20:27 runtime_log
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user   3696640 Dec  2 20:27 result.tar.gz
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user      9221 Dec  2 20:27 runtime_log.err
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user       650 Dec  2 20:27 D0NMDmTLWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCDPKDmqNa8yn.diag
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user     21647 Dec  2 20:27 stderr.txt
[2025-12-02 20:27:09] HITS file was successfully produced:
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user 681713197 Dec  2 20:26 shared/HITS.pool.root.1
[2025-12-02 20:27:09]  *** Contents of shared directory: ***
[2025-12-02 20:27:09] total 1035124
[2025-12-02 20:27:09] -rw-r--r-- 2 mf493845 unix-user    590123 Dec  2 16:41 input.tar.gz
[2025-12-02 20:27:09] -rw-r--r-- 2 mf493845 unix-user 373940732 Dec  2 16:41 ATLAS.root_0
[2025-12-02 20:27:09] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 16:41 start_atlas.sh
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user 681713197 Dec  2 20:26 HITS.pool.root.1
[2025-12-02 20:27:09] -rw------- 1 mf493845 unix-user   3696640 Dec  2 20:27 result.tar.gz
20:27:10 (503): run_atlas exited; CPU time 101811.746522
20:27:10 (503): called boinc_finish(0)

</stderr_txt>
]]>

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