Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-02 14:40:37 (13712): vboxwrapper version 26210
2025-12-02 14:40:37 (13712): BOINC client version: 8.2.4
2025-12-02 14:40:38 (13712): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2025-12-02 14:40:38 (13712): Successfully copied 'init_data.xml' to the shared directory.
2025-12-02 14:40:38 (13712): Create VM. (boinc_35a8ab3364485e44, slot#7)
2025-12-02 14:40:39 (13712): Setting Memory Size for VM. (4800MB)
2025-12-02 14:40:39 (13712): Setting CPU Count for VM. (8)
2025-12-02 14:40:39 (13712): Setting Chipset Options for VM.
2025-12-02 14:40:40 (13712): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-02 14:40:40 (13712): Setting Boot Options for VM.
2025-12-02 14:40:40 (13712): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-02 14:40:41 (13712): Enabling VM Network Access.
2025-12-02 14:40:41 (13712): Disabling USB Support for VM.
2025-12-02 14:40:41 (13712): Disabling COM Port Support for VM.
2025-12-02 14:40:41 (13712): Disabling LPT Port Support for VM.
2025-12-02 14:40:42 (13712): Disabling Audio Support for VM.
2025-12-02 14:40:42 (13712): Disabling Clipboard Support for VM.
2025-12-02 14:40:42 (13712): Disabling Drag and Drop Support for VM.
2025-12-02 14:40:42 (13712): Adding storage controller(s) to VM.
2025-12-02 14:40:43 (13712): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-02 14:40:43 (13712): Adding VirtualBox Guest Additions to VM.
2025-12-02 14:40:43 (13712): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-02 14:40:44 (13712): forwarding host port 49902 to guest port 80
2025-12-02 14:40:44 (13712): Enabling remote desktop for VM.
2025-12-02 14:40:44 (13712): Enabling shared directory for VM.
2025-12-02 14:40:45 (13712): Starting VM using VBoxManage interface. (boinc_35a8ab3364485e44, slot#7)
2025-12-02 14:40:51 (13712): Successfully started VM. (PID = '38704')
2025-12-02 14:40:51 (13712): Reporting VM Process ID to BOINC.
2025-12-02 14:40:51 (13712): Guest Log: BIOS: VirtualBox 7.2.4
2025-12-02 14:40:51 (13712): Guest Log: CPUID EDX: 0x178bfbff
2025-12-02 14:40:51 (13712): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-02 14:40:51 (13712): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-02 14:40:51 (13712): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-02 14:40:51 (13712): Detected: Web Application Enabled (http://localhost:49902)
2025-12-02 14:40:51 (13712): Detected: Remote Desktop Enabled (localhost:49903)
2025-12-02 14:40:51 (13712): Preference change detected
2025-12-02 14:40:51 (13712): Setting CPU throttle for VM. (100%)
2025-12-02 14:40:51 (13712): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-02 14:40:53 (13712): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-02 14:40:53 (13712): Guest Log: BIOS: Booting from Hard Disk...
2025-12-02 14:40:56 (13712): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-02 14:40:56 (13712): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-02 14:40:56 (13712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-02 14:41:01 (13712): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-02 14:41:01 (13712): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-02 14:41:05 (13712): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-02 14:41:05 (13712): Guest Log: 00:00:00.000132 main     Log opened 2025-12-02T14:41:02.924505000Z
2025-12-02 14:41:05 (13712): Guest Log: 00:00:00.000220 main     OS Product: Linux
2025-12-02 14:41:05 (13712): Guest Log: 00:00:00.000258 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-02 14:41:05 (13712): Guest Log: 00:00:00.000277 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-02 14:41:05 (13712): Guest Log: 00:00:00.000293 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-02 14:41:05 (13712): Guest Log: 00:00:00.000294 main     Process ID: 1393
2025-12-02 14:41:05 (13712): Guest Log: 00:00:00.000294 main     Package type: LINUX_64BITS_GENERIC
2025-12-02 14:41:05 (13712): Guest Log: 00:00:00.000943 main     5.2.32 r132073 started. Verbose level = 0
2025-12-02 14:41:05 (13712): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-02 14:41:05 (13712): Guest Log: [INFO] Mounting shared directory
2025-12-02 14:41:05 (13712): Guest Log: [INFO] Checking for init_data.xml
2025-12-02 14:41:08 (13712): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-02 14:41:08 (13712): Guest Log: [INFO] Detected branch: prod
2025-12-02 14:41:09 (13712): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-02 14:41:09 (13712): Guest Log: Copying input files
2025-12-02 14:41:11 (13712): Guest Log: Copied input files into RunAtlas.
2025-12-02 14:41:11 (13712): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-02 14:41:11 (13712): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-02 14:41:11 (13712): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-02 14:41:11 (13712): Guest Log: Further information can be found at the LHC@home message board.
2025-12-02 14:41:15 (13712): Guest Log: 00:00:10.004022 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 611 506 123 000ns (GuestNow=1 764 708 074 432 737 000 ns GuestLast=1 764 686 462 926 614 000 ns fSetTimeLastLoop=true )
2025-12-02 14:41:20 (13712): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-02 14:41:20 (13712): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-02 14:41:20 (13712): Guest Log: 2.6.3.0 1673 0 30148 153568 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-12-02 14:41:20 (13712): Guest Log: copied the webapp to /var/www
2025-12-02 14:41:21 (13712): Guest Log: ATHENA_PROC_NUMBER=8
2025-12-02 14:41:21 (13712): Guest Log: ATHENA_CORE_NUMBER=8
2025-12-02 14:41:21 (13712): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-02 14:41:21 (13712): Guest Log:  *** Starting ATLAS job. (PandaID=6898378180 taskID=47556173) ***
2025-12-02 16:20:56 (13712): Status Report: Elapsed Time: '6000.000000'
2025-12-02 16:20:56 (13712): Status Report: CPU Time: '44108.359375'
2025-12-02 18:01:01 (13712): Status Report: Elapsed Time: '12000.000000'
2025-12-02 18:01:01 (13712): Status Report: CPU Time: '91356.828125'
2025-12-02 19:25:42 (13712): Guest Log:  *** Job finished ***
2025-12-02 19:25:42 (13712): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:07,335 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:07,335 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:34,758 | INFO     | [monitor] cgroup control has ended
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:36,787 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140658032617280)>', '<ExcThread(monitor, started 140657586841344)>']
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:37,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:37,542 | INFO     | [monitor] control thread has ended
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,793 | INFO     | all workflow threads have been joined
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,793 | INFO     | end of generic workflow (traces error code: 0)
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,793 | INFO     | traces error code: 0
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,793 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,887 [wrapper] ==== pilot stdout END ====
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,892 [wrapper] ==== wrapper stdout RESUME ====
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,897 [wrapper] pilotpid: 6093
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,901 [wrapper] Pilot exit status: 0
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,914 [wrapper] pandaids: 6898378180
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,940 [wrapper] cleanup supervisor_pilot 18695 6094
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,945 [wrapper] Test setup, not cleaning
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,949 [wrapper] apfmon messages muted
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,954 [wrapper] ==== wrapper stdout END ====
2025-12-02 19:25:42 (13712): Guest Log: 2025-12-03 01:25:41,958 [wrapper] ==== wrapper stderr END ====
2025-12-02 19:25:42 (13712): Guest Log:  *** Error codes and diagnostics ***
2025-12-02 19:25:42 (13712): Guest Log:     "exeErrorCode": 0,
2025-12-02 19:25:42 (13712): Guest Log:     "exeErrorDiag": "",
2025-12-02 19:25:42 (13712): Guest Log:     "pilotErrorCode": 0,
2025-12-02 19:25:42 (13712): Guest Log:     "pilotErrorDiag": "",
2025-12-02 19:25:42 (13712): Guest Log:  *** Listing of results directory ***
2025-12-02 19:25:42 (13712): Guest Log: total 896316
2025-12-02 19:25:42 (13712): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 26 16:12 pilot3.tar.gz
2025-12-02 19:25:42 (13712): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 26 16:39 runpilot2-wrapper.sh
2025-12-02 19:25:42 (13712): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 26 16:41 queuedata.json
2025-12-02 19:25:42 (13712): Guest Log: -rwxr-xr-x. 1 atlas atlas      8707 Dec  2 20:41 init_data.xml
2025-12-02 19:25:42 (13712): Guest Log: -rwxr-xr-x. 1 atlas atlas    590110 Dec  2 20:41 input.tar.gz
2025-12-02 19:25:42 (13712): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Dec  2 20:41 start_atlas.sh
2025-12-02 19:25:42 (13712): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec  2 20:41 EVNT.47483658._003204.pool.root.1 -> /data/./ATLAS.root_0
2025-12-02 19:25:42 (13712): Guest Log: -rw-r--r--. 1 atlas atlas      2787 Dec  2 20:41 pandaJob.out
2025-12-02 19:25:42 (13712): Guest Log: -rw-------. 1 atlas atlas    989224 Dec  2 20:42 agis_schedconf.cvmfs.json
2025-12-02 19:25:42 (13712): Guest Log: drwx------. 5 atlas atlas      4096 Dec  2 20:42 pilot3
2025-12-02 19:25:42 (13712): Guest Log: -rw-------. 1 atlas atlas 906294671 Dec  3 01:24 HITS.47556173._001607.pool.root.1
2025-12-02 19:25:42 (13712): Guest Log: -rw-------. 1 atlas atlas      1046 Dec  3 01:24 memory_monitor_summary.json
2025-12-02 19:25:42 (13712): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec  3 01:24 agis_ddmendpoints.agis.ALL.json
2025-12-02 19:25:42 (13712): Guest Log: -rw-------. 1 atlas atlas   1606731 Dec  3 01:24 log.47556173._001607.job.log.tgz.1
2025-12-02 19:25:42 (13712): Guest Log: -rw-------. 1 atlas atlas        95 Dec  3 01:24 pilot_heartbeat.json
2025-12-02 19:25:42 (13712): Guest Log: -rw-------. 1 atlas atlas      8669 Dec  3 01:24 heartbeat.json
2025-12-02 19:25:42 (13712): Guest Log: -rw-------. 1 atlas atlas      4877 Dec  3 01:25 pilotlog.txt
2025-12-02 19:25:42 (13712): Guest Log: -rw-------. 1 atlas atlas   2238857 Dec  3 01:25 log.47556173._001607.job.log.1
2025-12-02 19:25:42 (13712): Guest Log: -rw-------. 1 atlas atlas       353 Dec  3 01:25 output.list
2025-12-02 19:25:42 (13712): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec  3 01:25 runtime_log
2025-12-02 19:25:42 (13712): Guest Log: -rw-------. 1 atlas atlas   3860480 Dec  3 01:25 result.tar.gz
2025-12-02 19:25:42 (13712): Guest Log: -rw-r--r--. 1 atlas atlas      8744 Dec  3 01:25 runtime_log.err
2025-12-02 19:25:42 (13712): Guest Log: -rw-------. 1 atlas atlas       659 Dec  3 01:25 ag3LDm6iXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPDKKDmNV8Oqm.diag
2025-12-02 19:25:42 (13712): Guest Log: Looking for outputfile HITS.47556173._001607.pool.root.1
2025-12-02 19:25:42 (13712): Guest Log: HITS file was successfully produced
2025-12-02 19:25:42 (13712): Guest Log: -rw-------. 1 atlas atlas 906294671 Dec  3 01:24 /home/atlas/RunAtlas/HITS.47556173._001607.pool.root.1
2025-12-02 19:25:45 (13712): Guest Log: Successfully finished the ATLAS job!
2025-12-02 19:25:45 (13712): Guest Log: Copying the results back to the shared directory!
2025-12-02 19:25:45 (13712): Guest Log:  *** Contents of shared directory: ***
2025-12-02 19:25:45 (13712): Guest Log: total 1289036
2025-12-02 19:25:45 (13712): Guest Log: -rwxrwxrwx. 1 root root 409189210 Dec  2 20:40 ATLAS.root_0
2025-12-02 19:25:45 (13712): Guest Log: -rwxrwxrwx. 1 root root 906294671 Dec  3 01:25 HITS.pool.root.1
2025-12-02 19:25:45 (13712): Guest Log: -rwxrwxrwx. 1 root root      8707 Dec  2 20:40 init_data.xml
2025-12-02 19:25:45 (13712): Guest Log: -rwxrwxrwx. 1 root root    590110 Dec  2 12:03 input.tar.gz
2025-12-02 19:25:45 (13712): Guest Log: -rwxrwxrwx. 1 root root   3860480 Dec  3 01:25 result.tar.gz
2025-12-02 19:25:45 (13712): Guest Log: -rwxrwxrwx. 1 root root     15847 Dec  2 12:03 start_atlas.sh
2025-12-02 19:25:45 (13712): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-02 19:25:45 (13712): VM Completion File Detected.
2025-12-02 19:25:45 (13712): Powering off VM.
2025-12-02 19:25:46 (13712): Successfully stopped VM.
2025-12-02 19:25:46 (13712): Deregistering VM. (boinc_35a8ab3364485e44, slot#7)
2025-12-02 19:25:46 (13712): Removing network bandwidth throttle group from VM.
2025-12-02 19:25:46 (13712): Removing VM from VirtualBox.
2025-12-02 19:25:52 (13712): called boinc_finish(0)

</stderr_txt>
]]>

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