Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:05:35 (2266016): wrapper (7.7.26015): starting
09:05:35 (2266016): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 09:05:35] Arguments: --nthreads 8
[2025-12-02 09:05:35] Threads: 8
[2025-12-02 09:05:35] Checking for CVMFS
[2025-12-02 09:05:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 09:05:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 09:05:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 09:05:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 09:05:38] 2.13.3.0 14328 38765 281732 153557 1 596 35234831 40960000 52724 16776704 0 492101622 99.723 354687983 48964 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 09:05:38] CVMFS is ok
[2025-12-02 09:05:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 09:05:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 09:05:38] Further information can be found at the LHC@home message board.
[2025-12-02 09:05:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 09:05:38] Checking for apptainer binary...
[2025-12-02 09:05:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 09:05:38] Running /usr/bin/apptainer --version
[2025-12-02 09:05:38] apptainer version 1.4.4-1.el9
[2025-12-02 09:05:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 09:05:39] c8-16-2.aglt2.org
[2025-12-02 09:05:39] apptainer works
[2025-12-02 09:05:39] Set ATHENA_PROC_NUMBER=8
[2025-12-02 09:05:39] Set ATHENA_CORE_NUMBER=8
[2025-12-02 09:05:39] Starting ATLAS job with PandaID=6901109983
[2025-12-02 09:05:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 19:46:48]  *** The last 200 lines of the pilot log: ***
[2025-12-02 19:46:48] 2025-12-03 00:45:32,928 | INFO     | monitor loop #2049: job 0:6901109983 is in state 'finished'
[2025-12-02 19:46:48] 2025-12-03 00:45:32,928 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:46:48] 2025-12-03 00:45:33,283 | INFO     | time since job start (38282s) is within the limit (172800.0s)
[2025-12-02 19:46:48] 2025-12-03 00:45:35,307 | INFO     | time since job start (38284s) is within the limit (172800.0s)
[2025-12-02 19:46:48] 2025-12-03 00:45:35,433 | INFO     | monitor loop #2050: job 0:6901109983 is in state 'finished'
[2025-12-02 19:46:48] 2025-12-03 00:45:35,433 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:46:48] 2025-12-03 00:45:37,313 | INFO     | time since job start (38286s) is within the limit (172800.0s)
[2025-12-02 19:46:48] 2025-12-03 00:45:37,940 | INFO     | monitor loop #2051: job 0:6901109983 is in state 'finished'
[2025-12-02 19:46:48] 2025-12-03 00:45:37,940 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:46:48] 2025-12-03 00:45:39,323 | INFO     | time since job start (38288s) is within the limit (172800.0s)
[2025-12-02 19:46:48] 2025-12-03 00:45:40,450 | INFO     | monitor loop #2052: job 0:6901109983 is in state 'finished'
[2025-12-02 19:46:48] 2025-12-03 00:45:40,450 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:46:48] 2025-12-03 00:45:41,330 | INFO     | time since job start (38290s) is within the limit (172800.0s)
[2025-12-02 19:46:48] 2025-12-03 00:45:43,008 | INFO     | monitor loop #2053: job 0:6901109983 is in state 'finished'
[2025-12-02 19:46:48] 2025-12-03 00:45:43,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:46:48] 2025-12-03 00:45:43,762 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 19:46:48] 2025-12-03 00:45:43,805 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.0322656250005
[2025-12-02 19:46:48] 2025-12-03 00:45:43,882 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6901109983/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 19:46:48] 2025-12-03 00:45:43,920 | INFO     | extracted standard info from prmon json
[2025-12-02 19:46:48] 2025-12-03 00:45:43,920 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 19:46:48] 2025-12-03 00:45:43,920 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 19:46:48] 2025-12-03 00:45:43,929 | INFO     | fitting pss+swap vs Time
[2025-12-02 19:46:48] 2025-12-03 00:45:43,929 | INFO     | sum of square deviations: 74981594725.08838
[2025-12-02 19:46:48] 2025-12-03 00:45:43,944 | INFO     | sum of deviations: 1047030516310.6057
[2025-12-02 19:46:48] 2025-12-03 00:45:43,945 | INFO     | mean x: 1764703709.3691814
[2025-12-02 19:46:48] 2025-12-03 00:45:43,945 | INFO     | mean y: 3254084.062600321
[2025-12-02 19:46:48] 2025-12-03 00:45:43,945 | INFO     | intersect: -24638774972.94046
[2025-12-02 19:46:48] 2025-12-03 00:45:43,945 | INFO     | chi2: 32.71869989353579
[2025-12-02 19:46:48] 2025-12-03 00:45:43,945 | INFO     | sum of square deviations: 73191021303.13908
[2025-12-02 19:46:48] 2025-12-03 00:45:43,954 | INFO     | sum of deviations: 1286083044625.2712
[2025-12-02 19:46:48] 2025-12-03 00:45:43,954 | INFO     | mean x: 1764703556.8802588
[2025-12-02 19:46:48] 2025-12-03 00:45:43,954 | INFO     | mean y: 3274435.800970874
[2025-12-02 19:46:48] 2025-12-03 00:45:43,954 | INFO     | intersect: -31005383223.089626
[2025-12-02 19:46:48] 2025-12-03 00:45:43,955 | INFO     | chi2: 29.365977494007183
[2025-12-02 19:46:48] 2025-12-03 00:45:43,955 | INFO     | current chi2=29.365977494007183 (change=10.247113761971342 %)
[2025-12-02 19:46:48] 2025-12-03 00:45:43,955 | INFO     | right removable region: 617
[2025-12-02 19:46:48] 2025-12-03 00:45:43,955 | INFO     | sum of square deviations: 73190500973.13905
[2025-12-02 19:46:48] 2025-12-03 00:45:43,980 | INFO     | sum of deviations: 742247323501.8732
[2025-12-02 19:46:48] 2025-12-03 00:45:43,980 | INFO     | mean x: 1764703861.8802588
[2025-12-02 19:46:48] 2025-12-03 00:45:43,980 | INFO     | mean y: 3280034.5388349514
[2025-12-02 19:46:48] 2025-12-03 00:45:43,980 | INFO     | intersect: -17893123198.645153
[2025-12-02 19:46:48] 2025-12-03 00:45:43,981 | INFO     | chi2: 27.31016790853698
[2025-12-02 19:46:48] 2025-12-03 00:45:43,981 | INFO     | current chi2=27.31016790853698 (change=16.53040005439633 %)
[2025-12-02 19:46:48] 2025-12-03 00:45:43,981 | INFO     | left removable region: 10
[2025-12-02 19:46:48] 2025-12-03 00:45:43,981 | INFO     | sum of square deviations: 69351573098.30319
[2025-12-02 19:46:48] 2025-12-03 00:45:44,008 | INFO     | sum of deviations: 754409183747.7516
[2025-12-02 19:46:48] 2025-12-03 00:45:44,008 | INFO     | mean x: 1764703831.4052718
[2025-12-02 19:46:48] 2025-12-03 00:45:44,008 | INFO     | mean y: 3329981.2652388797
[2025-12-02 19:46:48] 2025-12-03 00:45:44,008 | INFO     | intersect: -19193188821.846863
[2025-12-02 19:46:48] 2025-12-03 00:45:44,008 | INFO     | chi2: 18.69640842695351
[2025-12-02 19:46:48] 2025-12-03 00:45:44,008 | INFO     | current memory leak: 10.88 B/s (using 607 data points, chi2=18.70)
[2025-12-02 19:46:48] 2025-12-03 00:45:44,009 | INFO     | could have reported an average CPU frequency of 3800 MHz (24 samples)
[2025-12-02 19:46:48] 2025-12-03 00:45:44,009 | INFO     | ..............................
[2025-12-02 19:46:48] 2025-12-03 00:45:44,009 | INFO     | . Timing measurements:
[2025-12-02 19:46:48] 2025-12-03 00:45:44,009 | INFO     | . get job = 0 s
[2025-12-02 19:46:48] 2025-12-03 00:45:44,009 | INFO     | . initial setup = 7 s
[2025-12-02 19:46:48] 2025-12-03 00:45:44,009 | INFO     | . payload setup = 158 s
[2025-12-02 19:46:48] 2025-12-03 00:45:44,009 | INFO     | . stage-in = 0 s
[2025-12-02 19:46:48] 2025-12-03 00:45:44,009 | INFO     | . payload execution = 37991 s
[2025-12-02 19:46:48] 2025-12-03 00:45:44,009 | INFO     | . stage-out = 6 s
[2025-12-02 19:46:48] 2025-12-03 00:45:44,009 | INFO     | . log creation = 2 s
[2025-12-02 19:46:48] 2025-12-03 00:45:44,009 | INFO     | ..............................
[2025-12-02 19:46:48] 2025-12-03 00:45:44,263 | INFO     | 
[2025-12-02 19:46:48] 2025-12-03 00:45:44,263 | INFO     | job summary report
[2025-12-02 19:46:48] 2025-12-03 00:45:44,263 | INFO     | --------------------------------------------------
[2025-12-02 19:46:48] 2025-12-03 00:45:44,263 | INFO     | PanDA job id: 6901109983
[2025-12-02 19:46:48] 2025-12-03 00:45:44,263 | INFO     | task id: 47531058
[2025-12-02 19:46:48] 2025-12-03 00:45:44,263 | INFO     | errors: (none)
[2025-12-02 19:46:48] 2025-12-03 00:45:44,263 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 19:46:48] 2025-12-03 00:45:44,263 | INFO     | pilot state: finished 
[2025-12-02 19:46:48] 2025-12-03 00:45:44,263 | INFO     | transexitcode: 0
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | exeerrorcode: 0
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | exeerrordiag: 
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | exitcode: 0
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | exitmsg: OK
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | cpuconsumptiontime: 115480 s
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | nevents: 1000
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | neventsw: 0
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | pid: 2351137
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | pgrp: 2351137
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | corecount: 8
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | event service: False
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | sizes: {0: 2284226, 1: 2284481, 2: 2284481, 12: 2284509, 23: 2284537, 34: 2284565, 41: 2284983, 45: 2285011, 38151: 2346222, 38158: 2355216, 38160: 2355272, 38206:
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | --------------------------------------------------
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | 
[2025-12-02 19:46:48] 2025-12-03 00:45:44,264 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-02 19:46:48] 2025-12-03 00:45:44,364 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 19:46:48] 2025-12-03 00:45:44,365 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,366 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 19:46:48] 2025-12-03 00:45:44,366 | INFO     | job 6901109983 has completed (purged errors)
[2025-12-02 19:46:48] 2025-12-03 00:45:44,366 | INFO     | overall cleanup function is called
[2025-12-02 19:46:48] 2025-12-03 00:45:45,508 | INFO     | --- collectZombieJob: --- 10, [2351137]
[2025-12-02 19:46:48] 2025-12-03 00:45:45,511 | INFO     | zombie collector waiting for pid 2351137
[2025-12-02 19:46:48] 2025-12-03 00:45:45,511 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 19:46:48] 2025-12-03 00:45:45,511 | INFO     | collected zombie processes
[2025-12-02 19:46:48] 2025-12-03 00:45:45,511 | INFO     | will attempt to kill all subprocesses of pid=2351137
[2025-12-02 19:46:48] 2025-12-03 00:45:45,893 | INFO     | PID=2302257 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 19:46:48] 2025-12-03 00:45:45,929 | INFO     | .. there are 103 such processes running
[2025-12-02 19:46:48] 2025-12-03 00:45:48,180 | INFO     | process IDs to be killed: [2351137] (in reverse order)
[2025-12-02 19:46:48] 2025-12-03 00:45:48,812 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 19:46:48] 2025-12-03 00:45:48,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 19:46:48] 2025-12-03 00:45:48,887 | INFO     | did not find any defunct processes belonging to 2351137
[2025-12-02 19:46:48] 2025-12-03 00:45:48,972 | INFO     | did not find any defunct processes belonging to 2351137
[2025-12-02 19:46:48] 2025-12-03 00:45:48,974 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 19:46:48] 2025-12-03 00:45:48,974 | INFO     | ready for new job
[2025-12-02 19:46:48] 2025-12-03 00:45:48,975 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 19:46:48] 2025-12-03 00:45:48,981 | INFO     | ***************************************
[2025-12-02 19:46:48] 2025-12-03 00:45:48,982 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 19:46:48] 2025-12-03 00:45:48,982 | INFO     | ***************************************
[2025-12-02 19:46:48] 2025-12-03 00:45:48,982 | INFO     | 
[2025-12-02 19:46:48] 2025-12-03 00:45:48,996 | INFO     | architecture information:
[2025-12-02 19:46:48] 2025-12-03 00:45:49,007 | INFO     | executing command: cat /etc/os-release
[2025-12-02 19:46:48] 2025-12-03 00:45:49,099 | INFO     | cat /etc/os-release:
[2025-12-02 19:46:48] NAME="CentOS Linux"
[2025-12-02 19:46:48] VERSION="7 (Core)"
[2025-12-02 19:46:48] ID="centos"
[2025-12-02 19:46:48] ID_LIKE="rhel fedora"
[2025-12-02 19:46:48] VERSION_ID="7"
[2025-12-02 19:46:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 19:46:48] ANSI_COLOR="0;31"
[2025-12-02 19:46:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 19:46:48] HOME_URL="https://www.centos.org/"
[2025-12-02 19:46:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 19:46:48] 
[2025-12-02 19:46:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 19:46:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 19:46:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 19:46:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 19:46:48] 
[2025-12-02 19:46:48] 2025-12-03 00:45:49,100 | INFO     | ***************************************
[2025-12-02 19:46:48] 2025-12-03 00:45:49,602 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-02 19:46:48] 2025-12-03 00:45:49,677 | INFO     | sufficient remaining disk space (165137088512 B)
[2025-12-02 19:46:48] 2025-12-03 00:45:49,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 19:46:48] 2025-12-03 00:45:49,694 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 19:46:48] 2025-12-03 00:45:49,694 | INFO     | update_server=False
[2025-12-02 19:46:48] 2025-12-03 00:45:49,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 19:46:48] 2025-12-03 00:45:49,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 19:46:48] 2025-12-03 00:45:49,695 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 19:46:48] 2025-12-03 00:45:49,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 19:46:48] 2025-12-03 00:45:49,696 | INFO     | aborting loop
[2025-12-02 19:46:48] 2025-12-03 00:45:49,720 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 19:46:48] 2025-12-03 00:45:50,136 | INFO     | all payload control threads have been joined
[2025-12-02 19:46:48] 2025-12-03 00:45:50,206 | INFO     | all job control threads have been joined
[2025-12-02 19:46:48] 2025-12-03 00:45:50,254 | INFO     | all data control threads have been joined
[2025-12-02 19:46:48] 2025-12-03 00:45:50,700 | INFO     | [job] job monitor thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:50,704 | INFO     | [job] retrieve thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:50,707 | INFO     | [job] queue monitor thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:50,989 | INFO     | [data] copytool_in thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:50,990 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:50,990 | INFO     | [job] validate thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:51,080 | INFO     | [payload] failed_post thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:51,141 | INFO     | [payload] control thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:51,217 | INFO     | [job] control thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:51,259 | INFO     | [data] control thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:51,461 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:51,637 | INFO     | [payload] validate_post thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:51,708 | INFO     | [data] copytool_out thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:51,941 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:52,221 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:45:53,739 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 19:46:48] 2025-12-03 00:46:22,389 | INFO     | PID=2302257 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 19:46:48] 2025-12-03 00:46:22,396 | INFO     | .. there are 103 such processes running
[2025-12-02 19:46:48] 2025-12-03 00:46:22,396 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 19:46:48] 2025-12-03 00:46:22,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 19:46:48] 2025-12-03 00:46:22,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 19:46:48] 2025-12-03 00:46:40,285 | INFO     | [monitor] cgroup control has ended
[2025-12-02 19:46:48] 2025-12-03 00:46:40,986 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140616375727936)>', '<ExcThread(monitor, started 140615744481024)>']
[2025-12-02 19:46:48] 2025-12-03 00:46:41,532 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 19:46:48] 2025-12-03 00:46:41,532 | INFO     | [monitor] control thread has ended
[2025-12-02 19:46:48] 2025-12-03 00:46:46,012 | INFO     | all workflow threads have been joined
[2025-12-02 19:46:48] 2025-12-03 00:46:46,014 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 19:46:48] 2025-12-03 00:46:46,015 | INFO     | traces error code: 0
[2025-12-02 19:46:48] 2025-12-03 00:46:46,015 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 19:46:48] 2025-12-03 00:46:47,126 [wrapper] ==== pilot stdout END ====
[2025-12-02 19:46:48] 2025-12-03 00:46:47,181 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 19:46:48] 2025-12-03 00:46:47,208 [wrapper] pilotpid: 2302257
[2025-12-02 19:46:48] 2025-12-03 00:46:47,223 [wrapper] Pilot exit status: 0
[2025-12-02 19:46:48] 2025-12-03 00:46:47,367 [wrapper] pandaids: 6901109983
[2025-12-02 19:46:48] 2025-12-03 00:46:47,600 [wrapper] cleanup supervisor_pilot  966558 2302258
[2025-12-02 19:46:48] 2025-12-03 00:46:47,629 [wrapper] Test setup, not cleaning
[2025-12-02 19:46:48] 2025-12-03 00:46:47,648 [wrapper] apfmon messages muted
[2025-12-02 19:46:48] 2025-12-03 00:46:47,663 [wrapper] ==== wrapper stdout END ====
[2025-12-02 19:46:48] 2025-12-03 00:46:47,676 [wrapper] ==== wrapper stderr END ====
[2025-12-02 19:46:48]  *** Error codes and diagnostics ***
[2025-12-02 19:46:48]     "exeErrorCode": 0,
[2025-12-02 19:46:48]     "exeErrorDiag": "",
[2025-12-02 19:46:48]     "pilotErrorCode": 0,
[2025-12-02 19:46:48]     "pilotErrorDiag": "",
[2025-12-02 19:46:48]  *** Listing of results directory ***
[2025-12-02 19:46:48] total 1062536
[2025-12-02 19:46:48] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-02 19:46:48] -rwx------. 1 boincer umatlas     36292 Nov 29 04:22 runpilot2-wrapper.sh
[2025-12-02 19:46:48] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 04:26 queuedata.json
[2025-12-02 19:46:48] -rw-r--r--. 1 boincer umatlas       100 Dec  2 09:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 19:46:48] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 09:05 run_atlas
[2025-12-02 19:46:48] -rw-r--r--. 1 boincer umatlas       105 Dec  2 09:05 job.xml
[2025-12-02 19:46:48] -rw-r--r--. 2 boincer umatlas 378927956 Dec  2 09:05 EVNT.47531050._000544.pool.root.1
[2025-12-02 19:46:48] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 09:05 start_atlas.sh
[2025-12-02 19:46:48] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 09:05 shared
[2025-12-02 19:46:48] -rw-r--r--. 2 boincer umatlas    590126 Dec  2 09:05 input.tar.gz
[2025-12-02 19:46:48] -rw-r--r--. 1 boincer umatlas         0 Dec  2 09:05 boinc_lockfile
[2025-12-02 19:46:48] -rw-r--r--. 1 boincer umatlas      2880 Dec  2 09:05 pandaJob.out
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas        57 Dec  2 09:05 setup.sh.local
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas    987484 Dec  2 09:07 agis_schedconf.cvmfs.json
[2025-12-02 19:46:48] drwx------. 5 boincer umatlas      4096 Dec  2 09:07 pilot3
[2025-12-02 19:46:48] -rw-r--r--. 1 boincer umatlas       533 Dec  2 19:23 boinc_task_state.xml
[2025-12-02 19:46:48] -rw-r--r--. 1 boincer umatlas      7174 Dec  2 19:39 init_data.xml
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas 692369815 Dec  2 19:44 HITS.47531058._001600.pool.root.1
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas      1052 Dec  2 19:44 memory_monitor_summary.json
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas   1516240 Dec  2 19:44 agis_ddmendpoints.agis.ALL.json
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas   1901726 Dec  2 19:44 log.47531058._001600.job.log.tgz.1
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas     28034 Dec  2 19:45 heartbeat.json
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas        95 Dec  2 19:45 pilot_heartbeat.json
[2025-12-02 19:46:48] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 19:46 boinc_mmap_file
[2025-12-02 19:46:48] -rw-r--r--. 1 boincer umatlas        29 Dec  2 19:46 wrapper_checkpoint.txt
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas      4826 Dec  2 19:46 pilotlog.txt
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas   4492475 Dec  2 19:46 log.47531058._001600.job.log.1
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas       353 Dec  2 19:46 output.list
[2025-12-02 19:46:48] -rw-r--r--. 1 boincer umatlas       620 Dec  2 19:46 runtime_log
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas   6430720 Dec  2 19:46 result.tar.gz
[2025-12-02 19:46:48] -rw-r--r--. 1 boincer umatlas      9338 Dec  2 19:46 runtime_log.err
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas       659 Dec  2 19:46 fGyMDm8KWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxAPKDmjfc09n.diag
[2025-12-02 19:46:48] -rw-r--r--. 1 boincer umatlas     21901 Dec  2 19:46 stderr.txt
[2025-12-02 19:46:48] HITS file was successfully produced:
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas 692369815 Dec  2 19:44 shared/HITS.pool.root.1
[2025-12-02 19:46:48]  *** Contents of shared directory: ***
[2025-12-02 19:46:48] total 1053076
[2025-12-02 19:46:48] -rw-r--r--. 2 boincer umatlas 378927956 Dec  2 09:05 ATLAS.root_0
[2025-12-02 19:46:48] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 09:05 start_atlas.sh
[2025-12-02 19:46:48] -rw-r--r--. 2 boincer umatlas    590126 Dec  2 09:05 input.tar.gz
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas 692369815 Dec  2 19:44 HITS.pool.root.1
[2025-12-02 19:46:48] -rw-------. 1 boincer umatlas   6430720 Dec  2 19:46 result.tar.gz
19:46:49 (2266016): run_atlas exited; CPU time 116540.940834
19:46:49 (2266016): called boinc_finish(0)

</stderr_txt>
]]>

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