Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:39:14 (7141): wrapper (7.7.26015): starting
08:39:14 (7141): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 08:39:14] Arguments: --nthreads 12
[2025-12-02 08:39:14] Threads: 12
[2025-12-02 08:39:14] Checking for CVMFS
[2025-12-02 08:39:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 08:39:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 08:39:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 08:39:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 08:39:14] 2.11.2.0 2981 296347 93012 153557 3 82 14914246 20275200 1 130560 1 134704039 99.964 17814439 14745 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 08:39:14] CVMFS is ok
[2025-12-02 08:39:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 08:39:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 08:39:14] Further information can be found at the LHC@home message board.
[2025-12-02 08:39:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 08:39:14] Checking for apptainer binary...
[2025-12-02 08:39:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 08:39:14] Running /usr/bin/apptainer --version
[2025-12-02 08:39:14] apptainer version 1.3.2-1.el7
[2025-12-02 08:39:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 08:39:16] c-205-30.aglt2.org
[2025-12-02 08:39:16] apptainer works
[2025-12-02 08:39:16] Set ATHENA_PROC_NUMBER=12
[2025-12-02 08:39:16] Set ATHENA_CORE_NUMBER=12
[2025-12-02 08:39:16] Starting ATLAS job with PandaID=6895342402
[2025-12-02 08:39:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 15:53:19]  *** The last 200 lines of the pilot log: ***
[2025-12-02 15:53:19] 2025-12-02 20:52:45,709 | INFO     | monitor loop #1948: job 0:6895342402 is in state 'finished'
[2025-12-02 15:53:19] 2025-12-02 20:52:45,709 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:53:19] 2025-12-02 20:52:46,186 | INFO     | time since job start (25995s) is within the limit (172800.0s)
[2025-12-02 15:53:19] 2025-12-02 20:52:47,257 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-02 15:53:19] 2025-12-02 20:52:47,262 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-12-02 15:53:19] 2025-12-02 20:52:47,264 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895342402/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 15:53:19] 2025-12-02 20:52:47,265 | INFO     | extracted standard info from prmon json
[2025-12-02 15:53:19] 2025-12-02 20:52:47,266 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 15:53:19] 2025-12-02 20:52:47,266 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 15:53:19] 2025-12-02 20:52:47,274 | INFO     | fitting pss+swap vs Time
[2025-12-02 15:53:19] 2025-12-02 20:52:47,275 | INFO     | sum of square deviations: 23972197100.866234
[2025-12-02 15:53:19] 2025-12-02 20:52:47,278 | INFO     | sum of deviations: 366468510091.6128
[2025-12-02 15:53:19] 2025-12-02 20:52:47,278 | INFO     | mean x: 1764695762.725352
[2025-12-02 15:53:19] 2025-12-02 20:52:47,279 | INFO     | mean y: 3433837.415492958
[2025-12-02 15:53:19] 2025-12-02 20:52:47,279 | INFO     | intersect: -26973877595.902122
[2025-12-02 15:53:19] 2025-12-02 20:52:47,279 | INFO     | chi2: 5.844264547326625
[2025-12-02 15:53:19] 2025-12-02 20:52:47,280 | INFO     | sum of square deviations: 23138006088.109238
[2025-12-02 15:53:19] 2025-12-02 20:52:47,284 | INFO     | sum of deviations: 536860639311.15283
[2025-12-02 15:53:19] 2025-12-02 20:52:47,284 | INFO     | mean x: 1764695610.2280285
[2025-12-02 15:53:19] 2025-12-02 20:52:47,284 | INFO     | mean y: 3464972.6650831355
[2025-12-02 15:53:19] 2025-12-02 20:52:47,284 | INFO     | intersect: -40941965238.08573
[2025-12-02 15:53:19] 2025-12-02 20:52:47,284 | INFO     | chi2: 2.5648749222911253
[2025-12-02 15:53:19] 2025-12-02 20:52:47,285 | INFO     | current chi2=2.5648749222911253 (change=56.112956531641075 %)
[2025-12-02 15:53:19] 2025-12-02 20:52:47,285 | INFO     | sum of square deviations: 22323396837.84609
[2025-12-02 15:53:19] 2025-12-02 20:52:47,289 | INFO     | sum of deviations: 561870910025.1925
[2025-12-02 15:53:19] 2025-12-02 20:52:47,289 | INFO     | mean x: 1764695457.7307692
[2025-12-02 15:53:19] 2025-12-02 20:52:47,289 | INFO     | mean y: 3469607.1177884615
[2025-12-02 15:53:19] 2025-12-02 20:52:47,289 | INFO     | intersect: -44413204519.80153
[2025-12-02 15:53:19] 2025-12-02 20:52:47,290 | INFO     | chi2: 2.2704696468663395
[2025-12-02 15:53:19] 2025-12-02 20:52:47,290 | INFO     | current chi2=2.2704696468663395 (change=11.47834823702836 %)
[2025-12-02 15:53:19] 2025-12-02 20:52:47,290 | INFO     | right removable region: 415
[2025-12-02 15:53:19] 2025-12-02 20:52:47,290 | INFO     | sum of square deviations: 23137947528.109238
[2025-12-02 15:53:19] 2025-12-02 20:52:47,294 | INFO     | sum of deviations: 236095323741.72214
[2025-12-02 15:53:19] 2025-12-02 20:52:47,294 | INFO     | mean x: 1764695915.2280285
[2025-12-02 15:53:19] 2025-12-02 20:52:47,294 | INFO     | mean y: 3457585.1591448933
[2025-12-02 15:53:19] 2025-12-02 20:52:47,294 | INFO     | intersect: -18003172125.85145
[2025-12-02 15:53:19] 2025-12-02 20:52:47,295 | INFO     | chi2: 3.7224963732194993
[2025-12-02 15:53:19] 2025-12-02 20:52:47,295 | INFO     | current chi2=3.7224963732194993 (change=36.30513569201275 %)
[2025-12-02 15:53:19] 2025-12-02 20:52:47,296 | INFO     | sum of square deviations: 22323305398.30529
[2025-12-02 15:53:19] 2025-12-02 20:52:47,299 | INFO     | sum of deviations: 203714131246.2932
[2025-12-02 15:53:19] 2025-12-02 20:52:47,300 | INFO     | mean x: 1764696067.7283654
[2025-12-02 15:53:19] 2025-12-02 20:52:47,300 | INFO     | mean y: 3463639.7548076925
[2025-12-02 15:53:19] 2025-12-02 20:52:47,300 | INFO     | intersect: -16100492290.459957
[2025-12-02 15:53:19] 2025-12-02 20:52:47,300 | INFO     | chi2: 3.671391516397234
[2025-12-02 15:53:19] 2025-12-02 20:52:47,300 | INFO     | current chi2=3.671391516397234 (change=1.3728651877252414 %)
[2025-12-02 15:53:19] 2025-12-02 20:52:47,301 | INFO     | left removable region: 20
[2025-12-02 15:53:19] 2025-12-02 20:52:47,301 | INFO     | sum of square deviations: 19110413742.15193
[2025-12-02 15:53:19] 2025-12-02 20:52:47,304 | INFO     | sum of deviations: 357509583844.6328
[2025-12-02 15:53:19] 2025-12-02 20:52:47,304 | INFO     | mean x: 1764696037.2405064
[2025-12-02 15:53:19] 2025-12-02 20:52:47,305 | INFO     | mean y: 3508517.235443038
[2025-12-02 15:53:19] 2025-12-02 20:52:47,305 | INFO     | intersect: -33009682845.26009
[2025-12-02 15:53:19] 2025-12-02 20:52:47,305 | INFO     | chi2: 0.04378331824982467
[2025-12-02 15:53:19] 2025-12-02 20:52:47,305 | INFO     | current memory leak: 18.71 B/s (using 395 data points, chi2=0.04)
[2025-12-02 15:53:19] 2025-12-02 20:52:47,306 | INFO     | could have reported an average CPU frequency of 2397 MHz (18 samples)
[2025-12-02 15:53:19] 2025-12-02 20:52:47,306 | INFO     | ..............................
[2025-12-02 15:53:19] 2025-12-02 20:52:47,306 | INFO     | . Timing measurements:
[2025-12-02 15:53:19] 2025-12-02 20:52:47,306 | INFO     | . get job = 0 s
[2025-12-02 15:53:19] 2025-12-02 20:52:47,306 | INFO     | . initial setup = 2 s
[2025-12-02 15:53:19] 2025-12-02 20:52:47,306 | INFO     | . payload setup = 7 s
[2025-12-02 15:53:19] 2025-12-02 20:52:47,306 | INFO     | . stage-in = 0 s
[2025-12-02 15:53:19] 2025-12-02 20:52:47,307 | INFO     | . payload execution = 25959 s
[2025-12-02 15:53:19] 2025-12-02 20:52:47,307 | INFO     | . stage-out = 3 s
[2025-12-02 15:53:19] 2025-12-02 20:52:47,307 | INFO     | . log creation = 0 s
[2025-12-02 15:53:19] 2025-12-02 20:52:47,307 | INFO     | ..............................
[2025-12-02 15:53:19] 2025-12-02 20:52:47,766 | INFO     | 
[2025-12-02 15:53:19] 2025-12-02 20:52:47,766 | INFO     | job summary report
[2025-12-02 15:53:19] 2025-12-02 20:52:47,766 | INFO     | --------------------------------------------------
[2025-12-02 15:53:19] 2025-12-02 20:52:47,766 | INFO     | PanDA job id: 6895342402
[2025-12-02 15:53:19] 2025-12-02 20:52:47,767 | INFO     | task id: 47556137
[2025-12-02 15:53:19] 2025-12-02 20:52:47,767 | INFO     | errors: (none)
[2025-12-02 15:53:19] 2025-12-02 20:52:47,767 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 15:53:19] 2025-12-02 20:52:47,767 | INFO     | pilot state: finished 
[2025-12-02 15:53:19] 2025-12-02 20:52:47,767 | INFO     | transexitcode: 0
[2025-12-02 15:53:19] 2025-12-02 20:52:47,767 | INFO     | exeerrorcode: 0
[2025-12-02 15:53:19] 2025-12-02 20:52:47,768 | INFO     | exeerrordiag: 
[2025-12-02 15:53:19] 2025-12-02 20:52:47,768 | INFO     | exitcode: 0
[2025-12-02 15:53:19] 2025-12-02 20:52:47,768 | INFO     | exitmsg: OK
[2025-12-02 15:53:19] 2025-12-02 20:52:47,768 | INFO     | cpuconsumptiontime: 298593 s
[2025-12-02 15:53:19] 2025-12-02 20:52:47,768 | INFO     | nevents: 1000
[2025-12-02 15:53:19] 2025-12-02 20:52:47,768 | INFO     | neventsw: 0
[2025-12-02 15:53:19] 2025-12-02 20:52:47,769 | INFO     | pid: 18041
[2025-12-02 15:53:19] 2025-12-02 20:52:47,769 | INFO     | pgrp: 18041
[2025-12-02 15:53:19] 2025-12-02 20:52:47,769 | INFO     | corecount: 12
[2025-12-02 15:53:19] 2025-12-02 20:52:47,769 | INFO     | event service: False
[2025-12-02 15:53:19] 2025-12-02 20:52:47,769 | INFO     | sizes: {0: 2284037, 1: 2284292, 6: 2284554, 12: 2284582, 25971: 2321903, 25976: 2331081, 25980: 2331271}
[2025-12-02 15:53:19] 2025-12-02 20:52:47,769 | INFO     | --------------------------------------------------
[2025-12-02 15:53:19] 2025-12-02 20:52:47,770 | INFO     | 
[2025-12-02 15:53:19] 2025-12-02 20:52:47,770 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-02 15:53:19] 2025-12-02 20:52:47,796 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,796 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,796 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,796 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,797 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,797 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,797 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,797 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,797 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,797 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,798 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,798 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,798 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,798 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,798 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,798 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,799 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,799 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 15:53:19] 2025-12-02 20:52:47,799 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,799 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 15:53:19] 2025-12-02 20:52:47,799 | INFO     | job 6895342402 has completed (purged errors)
[2025-12-02 15:53:19] 2025-12-02 20:52:47,800 | INFO     | overall cleanup function is called
[2025-12-02 15:53:19] 2025-12-02 20:52:48,816 | INFO     | --- collectZombieJob: --- 10, [18041]
[2025-12-02 15:53:19] 2025-12-02 20:52:48,816 | INFO     | zombie collector waiting for pid 18041
[2025-12-02 15:53:19] 2025-12-02 20:52:48,816 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 15:53:19] 2025-12-02 20:52:48,817 | INFO     | collected zombie processes
[2025-12-02 15:53:19] 2025-12-02 20:52:48,817 | INFO     | will attempt to kill all subprocesses of pid=18041
[2025-12-02 15:53:19] 2025-12-02 20:52:48,908 | INFO     | process IDs to be killed: [18041] (in reverse order)
[2025-12-02 15:53:19] 2025-12-02 20:52:48,962 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 15:53:19] 2025-12-02 20:52:48,963 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 15:53:19] 2025-12-02 20:52:48,966 | INFO     | did not find any defunct processes belonging to 18041
[2025-12-02 15:53:19] 2025-12-02 20:52:48,969 | INFO     | did not find any defunct processes belonging to 18041
[2025-12-02 15:53:19] 2025-12-02 20:52:48,971 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 15:53:19] 2025-12-02 20:52:48,972 | INFO     | ready for new job
[2025-12-02 15:53:19] 2025-12-02 20:52:48,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 15:53:19] 2025-12-02 20:52:48,974 | INFO     | ***************************************
[2025-12-02 15:53:19] 2025-12-02 20:52:48,974 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 15:53:19] 2025-12-02 20:52:48,974 | INFO     | ***************************************
[2025-12-02 15:53:19] 2025-12-02 20:52:48,974 | INFO     | 
[2025-12-02 15:53:19] 2025-12-02 20:52:48,975 | INFO     | architecture information:
[2025-12-02 15:53:19] 2025-12-02 20:52:48,975 | INFO     | executing command: cat /etc/os-release
[2025-12-02 15:53:19] 2025-12-02 20:52:48,990 | INFO     | cat /etc/os-release:
[2025-12-02 15:53:19] NAME="CentOS Linux"
[2025-12-02 15:53:19] VERSION="7 (Core)"
[2025-12-02 15:53:19] ID="centos"
[2025-12-02 15:53:19] ID_LIKE="rhel fedora"
[2025-12-02 15:53:19] VERSION_ID="7"
[2025-12-02 15:53:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 15:53:19] ANSI_COLOR="0;31"
[2025-12-02 15:53:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 15:53:19] HOME_URL="https://www.centos.org/"
[2025-12-02 15:53:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 15:53:19] 
[2025-12-02 15:53:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 15:53:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 15:53:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 15:53:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 15:53:19] 
[2025-12-02 15:53:19] 2025-12-02 20:52:48,991 | INFO     | ***************************************
[2025-12-02 15:53:19] 2025-12-02 20:52:49,494 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-02 15:53:19] 2025-12-02 20:52:49,513 | INFO     | sufficient remaining disk space (28240248832 B)
[2025-12-02 15:53:19] 2025-12-02 20:52:49,514 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 15:53:19] 2025-12-02 20:52:49,514 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 15:53:19] 2025-12-02 20:52:49,515 | INFO     | update_server=False
[2025-12-02 15:53:19] 2025-12-02 20:52:49,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 15:53:19] 2025-12-02 20:52:49,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:53:19] 2025-12-02 20:52:49,515 | INFO     | aborting loop
[2025-12-02 15:53:19] 2025-12-02 20:52:50,412 | INFO     | all data control threads have been joined
[2025-12-02 15:53:19] 2025-12-02 20:52:50,413 | INFO     | all job control threads have been joined
[2025-12-02 15:53:19] 2025-12-02 20:52:50,430 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 15:53:19] 2025-12-02 20:52:50,520 | INFO     | [job] retrieve thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:50,521 | INFO     | [job] job monitor thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:50,640 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:50,646 | INFO     | [payload] failed_post thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:50,827 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:50,834 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:50,835 | INFO     | [data] copytool_in thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:50,854 | INFO     | all payload control threads have been joined
[2025-12-02 15:53:19] 2025-12-02 20:52:51,417 | INFO     | [data] control thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:51,418 | INFO     | [job] control thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:51,833 | INFO     | [job] validate thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:51,860 | INFO     | [payload] control thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:51,920 | INFO     | [payload] validate_post thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:52,403 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:53:19] 2025-12-02 20:52:52,435 | INFO     | [data] copytool_out thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:53,008 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 15:53:19] 2025-12-02 20:52:53,408 | INFO     | [job] queue monitor thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:52:57,013 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:53:00,241 | INFO     | job.realtimelogging is not enabled
[2025-12-02 15:53:19] 2025-12-02 20:53:01,246 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 15:53:19] 2025-12-02 20:53:13,320 | INFO     | [monitor] cgroup control has ended
[2025-12-02 15:53:19] 2025-12-02 20:53:13,578 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139790066599744)>', '<ExcThread(monitor, started 139788896167680)>']
[2025-12-02 15:53:19] 2025-12-02 20:53:18,604 | INFO     | all workflow threads have been joined
[2025-12-02 15:53:19] 2025-12-02 20:53:18,604 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 15:53:19] 2025-12-02 20:53:18,604 | INFO     | traces error code: 0
[2025-12-02 15:53:19] 2025-12-02 20:53:18,605 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 15:53:19] 2025-12-02 20:53:19,388 | INFO     | PID=10821 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 15:53:19] 2025-12-02 20:53:19,389 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 15:53:19] 2025-12-02 20:53:19,389 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 15:53:19] 2025-12-02 20:53:19,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 15:53:19] 2025-12-02 20:53:19,389 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 15:53:19] 2025-12-02 20:53:19,389 | INFO     | [monitor] control thread has ended
[2025-12-02 15:53:19] 2025-12-02 20:53:19,489 [wrapper] ==== pilot stdout END ====
[2025-12-02 15:53:19] 2025-12-02 20:53:19,493 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 15:53:19] 2025-12-02 20:53:19,497 [wrapper] pilotpid: 10821
[2025-12-02 15:53:19] 2025-12-02 20:53:19,500 [wrapper] Pilot exit status: 0
[2025-12-02 15:53:19] 2025-12-02 20:53:19,515 [wrapper] pandaids: 6895342402
[2025-12-02 15:53:19] 2025-12-02 20:53:19,553 [wrapper] cleanup supervisor_pilot 27846 10822
[2025-12-02 15:53:19] 2025-12-02 20:53:19,556 [wrapper] Test setup, not cleaning
[2025-12-02 15:53:19] 2025-12-02 20:53:19,561 [wrapper] apfmon messages muted
[2025-12-02 15:53:19] 2025-12-02 20:53:19,565 [wrapper] ==== wrapper stdout END ====
[2025-12-02 15:53:19] 2025-12-02 20:53:19,568 [wrapper] ==== wrapper stderr END ====
[2025-12-02 15:53:19]  *** Error codes and diagnostics ***
[2025-12-02 15:53:19]     "exeErrorCode": 0,
[2025-12-02 15:53:19]     "exeErrorDiag": "",
[2025-12-02 15:53:19]     "pilotErrorCode": 0,
[2025-12-02 15:53:19]     "pilotErrorDiag": "",
[2025-12-02 15:53:19]  *** Listing of results directory ***
[2025-12-02 15:53:19] total 1318964
[2025-12-02 15:53:19] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 10:04 pilot3.tar.gz
[2025-12-02 15:53:19] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 10:12 queuedata.json
[2025-12-02 15:53:19] -rwx------ 1 boincer umatlas     36292 Nov 22 10:14 runpilot2-wrapper.sh
[2025-12-02 15:53:19] -rw-r--r-- 1 boincer umatlas       100 Dec  2 08:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 15:53:19] -rwxr-xr-x 1 boincer umatlas      7986 Dec  2 08:39 run_atlas
[2025-12-02 15:53:19] -rw-r--r-- 1 boincer umatlas       105 Dec  2 08:39 job.xml
[2025-12-02 15:53:19] -rw-r--r-- 2 boincer umatlas 410697528 Dec  2 08:39 EVNT.47483658._000405.pool.root.1
[2025-12-02 15:53:19] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 08:39 start_atlas.sh
[2025-12-02 15:53:19] drwxrwx--x 2 boincer umatlas      4096 Dec  2 08:39 shared
[2025-12-02 15:53:19] -rw-r--r-- 2 boincer umatlas    590101 Dec  2 08:39 input.tar.gz
[2025-12-02 15:53:19] -rw-r--r-- 1 boincer umatlas         0 Dec  2 08:39 boinc_lockfile
[2025-12-02 15:53:19] -rw-r--r-- 1 boincer umatlas      2785 Dec  2 08:39 pandaJob.out
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas        57 Dec  2 08:39 setup.sh.local
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas    987484 Dec  2 08:39 agis_schedconf.cvmfs.json
[2025-12-02 15:53:19] drwx------ 5 boincer umatlas      4096 Dec  2 08:39 pilot3
[2025-12-02 15:53:19] -rw-r--r-- 1 boincer umatlas       532 Dec  2 15:44 boinc_task_state.xml
[2025-12-02 15:53:19] -rw-r--r-- 1 boincer umatlas      5955 Dec  2 15:47 init_data.xml
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas 924380243 Dec  2 15:52 HITS.47556137._004009.pool.root.1
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas      1061 Dec  2 15:52 memory_monitor_summary.json
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas        95 Dec  2 15:52 pilot_heartbeat.json
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas   1516240 Dec  2 15:52 agis_ddmendpoints.agis.ALL.json
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas   2177650 Dec  2 15:52 log.47556137._004009.job.log.tgz.1
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas      8664 Dec  2 15:52 heartbeat.json
[2025-12-02 15:53:19] -rw-r--r-- 1 boincer umatlas      8192 Dec  2 15:52 boinc_mmap_file
[2025-12-02 15:53:19] -rw-r--r-- 1 boincer umatlas        29 Dec  2 15:52 wrapper_checkpoint.txt
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas       745 Dec  2 15:53 pilotlog.txt
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas   3638122 Dec  2 15:53 log.47556137._004009.job.log.1
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas       353 Dec  2 15:53 output.list
[2025-12-02 15:53:19] -rw-r--r-- 1 boincer umatlas       620 Dec  2 15:53 runtime_log
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas   5836800 Dec  2 15:53 result.tar.gz
[2025-12-02 15:53:19] -rw-r--r-- 1 boincer umatlas      9345 Dec  2 15:53 runtime_log.err
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas       670 Dec  2 15:53 IHRMDm1U4g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsDKKDmfM7yRo.diag
[2025-12-02 15:53:19] -rw-r--r-- 1 boincer umatlas     21294 Dec  2 15:53 stderr.txt
[2025-12-02 15:53:19] HITS file was successfully produced:
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas 924380243 Dec  2 15:52 shared/HITS.pool.root.1
[2025-12-02 15:53:19]  *** Contents of shared directory: ***
[2025-12-02 15:53:19] total 1310088
[2025-12-02 15:53:19] -rw-r--r-- 2 boincer umatlas 410697528 Dec  2 08:39 ATLAS.root_0
[2025-12-02 15:53:19] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 08:39 start_atlas.sh
[2025-12-02 15:53:19] -rw-r--r-- 2 boincer umatlas    590101 Dec  2 08:39 input.tar.gz
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas 924380243 Dec  2 15:52 HITS.pool.root.1
[2025-12-02 15:53:19] -rw------- 1 boincer umatlas   5836800 Dec  2 15:53 result.tar.gz
15:53:21 (7141): run_atlas exited; CPU time 291884.417819
15:53:21 (7141): called boinc_finish(0)

</stderr_txt>
]]>

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