Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:48:26 (1617653): wrapper (7.7.26015): starting
05:48:26 (1617653): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 05:48:26] Arguments: --nthreads 8
[2025-12-02 05:48:26] Threads: 8
[2025-12-02 05:48:26] Checking for CVMFS
[2025-12-02 05:48:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 05:48:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 05:48:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 05:48:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 05:48:29] 2.13.3.0 7314 38529 278948 153552 2 408 25128773 40960000 51417 16776704 0 577719468 99.750 368131630 48760 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 05:48:29] CVMFS is ok
[2025-12-02 05:48:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 05:48:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 05:48:29] Further information can be found at the LHC@home message board.
[2025-12-02 05:48:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 05:48:29] Checking for apptainer binary...
[2025-12-02 05:48:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 05:48:29] Running /usr/bin/apptainer --version
[2025-12-02 05:48:29] apptainer version 1.4.4-1.el9
[2025-12-02 05:48:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 05:48:30] c8-16-1.aglt2.org
[2025-12-02 05:48:30] apptainer works
[2025-12-02 05:48:30] Set ATHENA_PROC_NUMBER=8
[2025-12-02 05:48:30] Set ATHENA_CORE_NUMBER=8
[2025-12-02 05:48:30] Starting ATLAS job with PandaID=6896598262
[2025-12-02 05:48:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:00:14 (1617653): BOINC client no longer exists - exiting
09:00:14 (1617653): timer handler: client dead, exiting
09:09:29 (3518856): wrapper (7.7.26015): starting
09:09:29 (3518856): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 09:09:29] Arguments: --nthreads 8
[2025-12-02 09:09:29] Threads: 8
[2025-12-02 09:09:29] This job has been restarted, cleaning up previous attempt
[2025-12-02 09:09:29] Checking for CVMFS
[2025-12-02 09:09:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 09:09:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 09:09:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 09:09:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 09:09:31] 2.13.3.0 7314 38730 302080 153557 2 950 32517378 40960000 49776 16776704 0 580762062 99.750 370618053 48775 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 09:09:31] CVMFS is ok
[2025-12-02 09:09:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 09:09:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 09:09:31] Further information can be found at the LHC@home message board.
[2025-12-02 09:09:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 09:09:31] Checking for apptainer binary...
[2025-12-02 09:09:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 09:09:31] Running /usr/bin/apptainer --version
[2025-12-02 09:09:31] apptainer version 1.4.4-1.el9
[2025-12-02 09:09:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 09:09:32] c8-16-1.aglt2.org
[2025-12-02 09:09:32] apptainer works
[2025-12-02 09:09:32] Set ATHENA_PROC_NUMBER=8
[2025-12-02 09:09:32] Set ATHENA_CORE_NUMBER=8
[2025-12-02 09:09:32] Starting ATLAS job with PandaID=6896598262
[2025-12-02 09:09:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 18:53:07]  *** The last 200 lines of the pilot log: ***
[2025-12-02 18:53:08] 2025-12-02 23:52:18,719 | INFO     | monitor loop #1789: job 0:6896598262 is in state 'finished'
[2025-12-02 18:53:08] 2025-12-02 23:52:18,721 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 18:53:08] 2025-12-02 23:52:19,481 | INFO     | time since job start (34892s) is within the limit (172800.0s)
[2025-12-02 18:53:08] 2025-12-02 23:52:21,226 | INFO     | monitor loop #1790: job 0:6896598262 is in state 'finished'
[2025-12-02 18:53:08] 2025-12-02 23:52:21,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 18:53:08] 2025-12-02 23:52:21,488 | INFO     | time since job start (34894s) is within the limit (172800.0s)
[2025-12-02 18:53:08] 2025-12-02 23:52:23,736 | INFO     | monitor loop #1791: job 0:6896598262 is in state 'finished'
[2025-12-02 18:53:08] 2025-12-02 23:52:23,742 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 18:53:08] 2025-12-02 23:52:24,368 | INFO     | PID=3552350 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 18:53:08] 2025-12-02 23:52:24,368 | INFO     | .. there are 104 such processes running
[2025-12-02 18:53:08] 2025-12-02 23:52:25,369 | INFO     | time since job start (34898s) is within the limit (172800.0s)
[2025-12-02 18:53:08] 2025-12-02 23:52:26,256 | INFO     | monitor loop #1792: job 0:6896598262 is in state 'finished'
[2025-12-02 18:53:08] 2025-12-02 23:52:26,256 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 18:53:08] 2025-12-02 23:52:27,380 | INFO     | time since job start (34900s) is within the limit (172800.0s)
[2025-12-02 18:53:08] 2025-12-02 23:52:28,770 | INFO     | monitor loop #1793: job 0:6896598262 is in state 'finished'
[2025-12-02 18:53:08] 2025-12-02 23:52:28,773 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 18:53:08] 2025-12-02 23:52:29,395 | INFO     | time since job start (34902s) is within the limit (172800.0s)
[2025-12-02 18:53:08] 2025-12-02 23:52:30,432 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 18:53:08] 2025-12-02 23:52:30,440 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9909453125006
[2025-12-02 18:53:08] 2025-12-02 23:52:30,464 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6896598262/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 18:53:08] 2025-12-02 23:52:30,464 | INFO     | extracted standard info from prmon json
[2025-12-02 18:53:08] 2025-12-02 23:52:30,464 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 18:53:08] 2025-12-02 23:52:30,465 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 18:53:08] 2025-12-02 23:52:30,473 | INFO     | fitting pss+swap vs Time
[2025-12-02 18:53:08] 2025-12-02 23:52:30,474 | INFO     | sum of square deviations: 56824098686.06899
[2025-12-02 18:53:08] 2025-12-02 23:52:30,478 | INFO     | sum of deviations: 93107283382.25362
[2025-12-02 18:53:08] 2025-12-02 23:52:30,478 | INFO     | mean x: 1764702165.040493
[2025-12-02 18:53:08] 2025-12-02 23:52:30,478 | INFO     | mean y: 3309771.38028169
[2025-12-02 18:53:08] 2025-12-02 23:52:30,478 | INFO     | intersect: -2888185709.673131
[2025-12-02 18:53:08] 2025-12-02 23:52:30,478 | INFO     | chi2: 18.788661151542417
[2025-12-02 18:53:08] 2025-12-02 23:52:30,479 | INFO     | sum of square deviations: 55336933009.09777
[2025-12-02 18:53:08] 2025-12-02 23:52:30,482 | INFO     | sum of deviations: 333392350701.2956
[2025-12-02 18:53:08] 2025-12-02 23:52:30,483 | INFO     | mean x: 1764702012.5541742
[2025-12-02 18:53:08] 2025-12-02 23:52:30,483 | INFO     | mean y: 3334408.809946714
[2025-12-02 18:53:08] 2025-12-02 23:52:30,483 | INFO     | intersect: -10628591147.238066
[2025-12-02 18:53:08] 2025-12-02 23:52:30,483 | INFO     | chi2: 14.697142359436638
[2025-12-02 18:53:08] 2025-12-02 23:52:30,483 | INFO     | current chi2=14.697142359436638 (change=21.776531915207244 %)
[2025-12-02 18:53:08] 2025-12-02 23:52:30,483 | INFO     | right removable region: 562
[2025-12-02 18:53:08] 2025-12-02 23:52:30,483 | INFO     | sum of square deviations: 55336399259.09772
[2025-12-02 18:53:08] 2025-12-02 23:52:30,487 | INFO     | sum of deviations: -167194382117.5036
[2025-12-02 18:53:08] 2025-12-02 23:52:30,487 | INFO     | mean x: 1764702317.5541742
[2025-12-02 18:53:08] 2025-12-02 23:52:30,487 | INFO     | mean y: 3336447.0657193605
[2025-12-02 18:53:08] 2025-12-02 23:52:30,487 | INFO     | intersect: 5335239454.041524
[2025-12-02 18:53:08] 2025-12-02 23:52:30,488 | INFO     | chi2: 14.813718530558498
[2025-12-02 18:53:08] 2025-12-02 23:52:30,488 | INFO     | current chi2=14.813718530558498 (change=21.15607168027299 %)
[2025-12-02 18:53:08] 2025-12-02 23:52:30,488 | INFO     | left removable region: 10
[2025-12-02 18:53:08] 2025-12-02 23:52:30,488 | INFO     | sum of square deviations: 52156119586.804565
[2025-12-02 18:53:08] 2025-12-02 23:52:30,492 | INFO     | sum of deviations: 24033762304.826363
[2025-12-02 18:53:08] 2025-12-02 23:52:30,492 | INFO     | mean x: 1764702287.076087
[2025-12-02 18:53:08] 2025-12-02 23:52:30,492 | INFO     | mean y: 3378112.9565217393
[2025-12-02 18:53:08] 2025-12-02 23:52:30,492 | INFO     | intersect: -809804225.8058969
[2025-12-02 18:53:08] 2025-12-02 23:52:30,492 | INFO     | chi2: 8.854691191070454
[2025-12-02 18:53:08] 2025-12-02 23:52:30,493 | INFO     | current memory leak: 0.46 B/s (using 552 data points, chi2=8.85)
[2025-12-02 18:53:08] 2025-12-02 23:52:30,494 | INFO     | could have reported an average CPU frequency of 3799 MHz (22 samples)
[2025-12-02 18:53:08] 2025-12-02 23:52:30,494 | INFO     | ..............................
[2025-12-02 18:53:08] 2025-12-02 23:52:30,494 | INFO     | . Timing measurements:
[2025-12-02 18:53:08] 2025-12-02 23:52:30,494 | INFO     | . get job = 0 s
[2025-12-02 18:53:08] 2025-12-02 23:52:30,494 | INFO     | . initial setup = 3 s
[2025-12-02 18:53:08] 2025-12-02 23:52:30,494 | INFO     | . payload setup = 93 s
[2025-12-02 18:53:08] 2025-12-02 23:52:30,494 | INFO     | . stage-in = 0 s
[2025-12-02 18:53:08] 2025-12-02 23:52:30,494 | INFO     | . payload execution = 34653 s
[2025-12-02 18:53:08] 2025-12-02 23:52:30,494 | INFO     | . stage-out = 9 s
[2025-12-02 18:53:08] 2025-12-02 23:52:30,494 | INFO     | . log creation = 4 s
[2025-12-02 18:53:08] 2025-12-02 23:52:30,494 | INFO     | ..............................
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | 
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | job summary report
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | --------------------------------------------------
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | PanDA job id: 6896598262
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | task id: 47538121
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | errors: (none)
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | pilot state: finished 
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | transexitcode: 0
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | exeerrorcode: 0
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | exeerrordiag: 
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | exitcode: 0
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | exitmsg: OK
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | cpuconsumptiontime: 119670 s
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | nevents: 1000
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | neventsw: 0
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | pid: 3640948
[2025-12-02 18:53:08] 2025-12-02 23:52:30,586 | INFO     | pgrp: 3640948
[2025-12-02 18:53:08] 2025-12-02 23:52:30,587 | INFO     | corecount: 8
[2025-12-02 18:53:08] 2025-12-02 23:52:30,587 | INFO     | event service: False
[2025-12-02 18:53:08] 2025-12-02 23:52:30,587 | INFO     | sizes: {0: 2284219, 1: 2284474, 2: 2284474, 12: 2284502, 23: 2284530, 34: 2284558, 35: 2284976, 45: 2285004, 34751: 2343901, 34752: 2343900, 34762: 2352978, 34763:
[2025-12-02 18:53:08] 2025-12-02 23:52:30,587 | INFO     | --------------------------------------------------
[2025-12-02 18:53:08] 2025-12-02 23:52:30,587 | INFO     | 
[2025-12-02 18:53:08] 2025-12-02 23:52:30,587 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-12-02 18:53:08] 2025-12-02 23:52:30,802 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,803 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,803 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,803 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,804 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,804 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,804 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,804 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,804 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,804 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,804 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,804 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,804 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,805 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,805 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,805 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,805 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 18:53:08] 2025-12-02 23:52:30,805 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,808 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 18:53:08] 2025-12-02 23:52:30,808 | INFO     | job 6896598262 has completed (purged errors)
[2025-12-02 18:53:08] 2025-12-02 23:52:30,808 | INFO     | overall cleanup function is called
[2025-12-02 18:53:08] 2025-12-02 23:52:31,836 | INFO     | --- collectZombieJob: --- 10, [3640948]
[2025-12-02 18:53:08] 2025-12-02 23:52:31,836 | INFO     | zombie collector waiting for pid 3640948
[2025-12-02 18:53:08] 2025-12-02 23:52:31,836 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 18:53:08] 2025-12-02 23:52:31,836 | INFO     | collected zombie processes
[2025-12-02 18:53:08] 2025-12-02 23:52:31,836 | INFO     | will attempt to kill all subprocesses of pid=3640948
[2025-12-02 18:53:08] 2025-12-02 23:52:35,344 | INFO     | process IDs to be killed: [3640948] (in reverse order)
[2025-12-02 18:53:08] 2025-12-02 23:52:35,690 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 18:53:08] 2025-12-02 23:52:35,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 18:53:08] 2025-12-02 23:52:35,741 | INFO     | did not find any defunct processes belonging to 3640948
[2025-12-02 18:53:08] 2025-12-02 23:52:35,797 | INFO     | did not find any defunct processes belonging to 3640948
[2025-12-02 18:53:08] 2025-12-02 23:52:35,857 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 18:53:08] 2025-12-02 23:52:35,857 | INFO     | ready for new job
[2025-12-02 18:53:08] 2025-12-02 23:52:35,857 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 18:53:08] 2025-12-02 23:52:35,860 | INFO     | ***************************************
[2025-12-02 18:53:08] 2025-12-02 23:52:35,860 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 18:53:08] 2025-12-02 23:52:35,860 | INFO     | ***************************************
[2025-12-02 18:53:08] 2025-12-02 23:52:35,860 | INFO     | 
[2025-12-02 18:53:08] 2025-12-02 23:52:35,876 | INFO     | architecture information:
[2025-12-02 18:53:08] 2025-12-02 23:52:35,903 | INFO     | executing command: cat /etc/os-release
[2025-12-02 18:53:08] 2025-12-02 23:52:36,041 | INFO     | cat /etc/os-release:
[2025-12-02 18:53:08] NAME="CentOS Linux"
[2025-12-02 18:53:08] VERSION="7 (Core)"
[2025-12-02 18:53:08] ID="centos"
[2025-12-02 18:53:08] ID_LIKE="rhel fedora"
[2025-12-02 18:53:08] VERSION_ID="7"
[2025-12-02 18:53:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 18:53:08] ANSI_COLOR="0;31"
[2025-12-02 18:53:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 18:53:08] HOME_URL="https://www.centos.org/"
[2025-12-02 18:53:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 18:53:08] 
[2025-12-02 18:53:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 18:53:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 18:53:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 18:53:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 18:53:08] 
[2025-12-02 18:53:08] 2025-12-02 23:52:36,041 | INFO     | ***************************************
[2025-12-02 18:53:08] 2025-12-02 23:52:36,544 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-12-02 18:53:08] 2025-12-02 23:52:36,696 | INFO     | sufficient remaining disk space (160484556800 B)
[2025-12-02 18:53:08] 2025-12-02 23:52:36,697 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 18:53:08] 2025-12-02 23:52:36,697 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 18:53:08] 2025-12-02 23:52:36,697 | INFO     | update_server=False
[2025-12-02 18:53:08] 2025-12-02 23:52:36,697 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 18:53:08] 2025-12-02 23:52:36,932 | INFO     | all payload control threads have been joined
[2025-12-02 18:53:08] 2025-12-02 23:52:37,220 | INFO     | all data control threads have been joined
[2025-12-02 18:53:08] 2025-12-02 23:52:37,307 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 18:53:08] 2025-12-02 23:52:37,307 | INFO     | aborting loop
[2025-12-02 18:53:08] 2025-12-02 23:52:37,702 | INFO     | [job] retrieve thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:37,853 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 18:53:08] 2025-12-02 23:52:37,938 | INFO     | [payload] control thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:37,967 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 18:53:08] 2025-12-02 23:52:38,006 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:38,013 | INFO     | [job] validate thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:38,013 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:38,226 | INFO     | [data] control thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:38,313 | INFO     | [job] job monitor thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:38,368 | INFO     | all job control threads have been joined
[2025-12-02 18:53:08] 2025-12-02 23:52:38,405 | INFO     | [data] copytool_in thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:38,406 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:38,503 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:38,603 | INFO     | [payload] failed_post thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:39,224 | INFO     | [payload] validate_post thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:39,374 | INFO     | [job] control thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:39,689 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 18:53:08] 2025-12-02 23:52:39,975 | INFO     | [data] copytool_out thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:40,695 | INFO     | [job] queue monitor thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:41,863 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 18:53:08] 2025-12-02 23:52:51,081 | INFO     | [monitor] cgroup control has ended
[2025-12-02 18:53:08] 2025-12-02 23:52:52,147 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140646964700992)>', '<ExcThread(monitor, started 140646471948032)>']
[2025-12-02 18:53:08] 2025-12-02 23:52:57,181 | INFO     | all workflow threads have been joined
[2025-12-02 18:53:08] 2025-12-02 23:52:57,181 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 18:53:08] 2025-12-02 23:52:57,181 | INFO     | traces error code: 0
[2025-12-02 18:53:08] 2025-12-02 23:52:57,182 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 18:53:08] 2025-12-02 23:53:04,875 | INFO     | PID=3552350 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 18:53:08] 2025-12-02 23:53:04,876 | INFO     | .. there are 102 such processes running
[2025-12-02 18:53:08] 2025-12-02 23:53:04,876 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 18:53:08] 2025-12-02 23:53:04,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 18:53:08] 2025-12-02 23:53:04,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 18:53:08] 2025-12-02 23:53:04,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 18:53:08] 2025-12-02 23:53:04,876 | INFO     | [monitor] control thread has ended
[2025-12-02 18:53:08] 2025-12-02 23:53:05,067 [wrapper] ==== pilot stdout END ====
[2025-12-02 18:53:08] 2025-12-02 23:53:05,088 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 18:53:08] 2025-12-02 23:53:05,111 [wrapper] pilotpid: 3552350
[2025-12-02 18:53:08] 2025-12-02 23:53:05,134 [wrapper] Pilot exit status: 0
[2025-12-02 18:53:08] 2025-12-02 23:53:05,247 [wrapper] pandaids: 6896598262 6896598262
[2025-12-02 18:53:08] 2025-12-02 23:53:06,009 [wrapper] cleanup supervisor_pilot 1865483 3552351
[2025-12-02 18:53:08] 2025-12-02 23:53:06,026 [wrapper] Test setup, not cleaning
[2025-12-02 18:53:08] 2025-12-02 23:53:06,075 [wrapper] apfmon messages muted
[2025-12-02 18:53:08] 2025-12-02 23:53:06,091 [wrapper] ==== wrapper stdout END ====
[2025-12-02 18:53:08] 2025-12-02 23:53:06,120 [wrapper] ==== wrapper stderr END ====
[2025-12-02 18:53:08]  *** Error codes and diagnostics ***
[2025-12-02 18:53:08]     "exeErrorCode": 0,
[2025-12-02 18:53:08]     "exeErrorDiag": "",
[2025-12-02 18:53:08]     "pilotErrorCode": 0,
[2025-12-02 18:53:08]     "pilotErrorDiag": "",
[2025-12-02 18:53:08]  *** Listing of results directory ***
[2025-12-02 18:53:08] total 1433112
[2025-12-02 18:53:08] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 18:53:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 28 05:28 pilot3.tar.gz
[2025-12-02 18:53:08] -rwx------. 1 boincer umatlas     36292 Nov 28 05:28 runpilot2-wrapper.sh
[2025-12-02 18:53:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 28 05:32 queuedata.json
[2025-12-02 18:53:08] -rw-r--r--. 1 boincer umatlas       100 Dec  2 05:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 18:53:08] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 05:48 run_atlas
[2025-12-02 18:53:08] -rw-r--r--. 1 boincer umatlas       105 Dec  2 05:48 job.xml
[2025-12-02 18:53:08] -rw-r--r--. 3 boincer umatlas 376656552 Dec  2 05:48 EVNT.47528880._000007.pool.root.1
[2025-12-02 18:53:08] -rw-r--r--. 3 boincer umatlas 376656552 Dec  2 05:48 ATLAS.root_0
[2025-12-02 18:53:08] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 05:48 start_atlas.sh
[2025-12-02 18:53:08] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 05:48 shared
[2025-12-02 18:53:08] -rw-r--r--. 2 boincer umatlas    590120 Dec  2 05:48 input.tar.gz
[2025-12-02 18:53:08] -rw-r--r--. 1 boincer umatlas         0 Dec  2 05:48 boinc_lockfile
[2025-12-02 18:53:08] -rw-r--r--. 1 boincer umatlas      2877 Dec  2 09:09 pandaJob.out
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas        57 Dec  2 09:09 setup.sh.local
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas    987484 Dec  2 09:10 agis_schedconf.cvmfs.json
[2025-12-02 18:53:08] -rw-r--r--. 1 boincer umatlas       533 Dec  2 18:27 boinc_task_state.xml
[2025-12-02 18:53:08] -rw-r--r--. 1 boincer umatlas      7174 Dec  2 18:48 init_data.xml
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas 698532853 Dec  2 18:50 HITS.47538121._000082.pool.root.1
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas      1060 Dec  2 18:51 memory_monitor_summary.json
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas   1516240 Dec  2 18:51 agis_ddmendpoints.agis.ALL.json
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas   1855619 Dec  2 18:51 log.47538121._000082.job.log.tgz.1
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas        96 Dec  2 18:52 pilot_heartbeat.json
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas     27161 Dec  2 18:52 heartbeat.json
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas       824 Dec  2 18:53 pilotlog.txt
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas   3991875 Dec  2 18:53 log.47538121._000082.job.log.1
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas       353 Dec  2 18:53 output.list
[2025-12-02 18:53:08] -rw-r--r--. 1 boincer umatlas       620 Dec  2 18:53 runtime_log
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas   5888000 Dec  2 18:53 result.tar.gz
[2025-12-02 18:53:08] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 18:53 boinc_mmap_file
[2025-12-02 18:53:08] -rw-r--r--. 1 boincer umatlas      9423 Dec  2 18:53 runtime_log.err
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas       788 Dec  2 18:53 5soLDmrtAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfHLKDmHHJyGm.diag
[2025-12-02 18:53:08] -rw-r--r--. 1 boincer umatlas        29 Dec  2 18:53 wrapper_checkpoint.txt
[2025-12-02 18:53:08] -rw-r--r--. 1 boincer umatlas     24176 Dec  2 18:53 stderr.txt
[2025-12-02 18:53:08] HITS file was successfully produced:
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas 698532853 Dec  2 18:50 shared/HITS.pool.root.1
[2025-12-02 18:53:08]  *** Contents of shared directory: ***
[2025-12-02 18:53:08] total 1056352
[2025-12-02 18:53:08] -rw-r--r--. 3 boincer umatlas 376656552 Dec  2 05:48 ATLAS.root_0
[2025-12-02 18:53:08] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 05:48 start_atlas.sh
[2025-12-02 18:53:08] -rw-r--r--. 2 boincer umatlas    590120 Dec  2 05:48 input.tar.gz
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas 698532853 Dec  2 18:50 HITS.pool.root.1
[2025-12-02 18:53:08] -rw-------. 1 boincer umatlas   5888000 Dec  2 18:53 result.tar.gz
18:53:10 (3518856): run_atlas exited; CPU time 120410.417319
18:53:10 (3518856): called boinc_finish(0)

</stderr_txt>
]]>

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