Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:24:14 (1916204): wrapper (7.7.26015): starting
22:24:14 (1916204): wrapper: running run_atlas (--nthreads 4)
[2025-12-05 22:24:14] Arguments: --nthreads 4
[2025-12-05 22:24:14] Threads: 4
[2025-12-05 22:24:14] Checking for CVMFS
[2025-12-05 22:24:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-05 22:24:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-05 22:24:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-05 22:24:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-05 22:24:14] 2.9.2.0 2420625 24635 110908 153666 2 81 34875538 36864000 0 130560 1 9771880 99.963 1016732 899 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-05 22:24:14] CVMFS is ok
[2025-12-05 22:24:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-05 22:24:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-05 22:24:14] Further information can be found at the LHC@home message board.
[2025-12-05 22:24:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-05 22:24:14] Checking for apptainer binary...
[2025-12-05 22:24:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-05 22:24:14] Running /usr/bin/apptainer --version
[2025-12-05 22:24:14] apptainer version 1.4.1-1.1
[2025-12-05 22:24:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-05 22:24:15] thA350a
[2025-12-05 22:24:15] apptainer works
[2025-12-05 22:24:15] Set ATHENA_PROC_NUMBER=4
[2025-12-05 22:24:15] Set ATHENA_CORE_NUMBER=4
[2025-12-05 22:24:15] Starting ATLAS job with PandaID=6897510426
[2025-12-05 22:24:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-06 05:32:15]  *** The last 200 lines of the pilot log: ***
[2025-12-06 05:32:15] 2025-12-06 04:31:43,116 | INFO     | extracted standard memory fields from prmon json
[2025-12-06 05:32:15] 2025-12-06 04:31:43,116 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-06 05:32:15] 2025-12-06 04:31:43,119 | INFO     | fitting pss+swap vs Time
[2025-12-06 05:32:15] 2025-12-06 04:31:43,119 | INFO     | sum of square deviations: 22973323765.0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,121 | INFO     | sum of deviations: 264626408057.00003
[2025-12-06 05:32:15] 2025-12-06 04:31:43,121 | INFO     | mean x: 1764982665.5
[2025-12-06 05:32:15] 2025-12-06 04:31:43,121 | INFO     | mean y: 2364376.1666666665
[2025-12-06 05:32:15] 2025-12-06 04:31:43,121 | INFO     | intersect: -20328216772.29148
[2025-12-06 05:32:15] 2025-12-06 04:31:43,121 | INFO     | chi2: 3.751970874436231
[2025-12-06 05:32:15] 2025-12-06 04:31:43,121 | INFO     | sum of square deviations: 22162573680.0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,123 | INFO     | sum of deviations: 310884493222.0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,123 | INFO     | mean x: 1764982513.0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,123 | INFO     | mean y: 2373024.6771084336
[2025-12-06 05:32:15] 2025-12-06 04:31:43,123 | INFO     | intersect: -24755838815.80337
[2025-12-06 05:32:15] 2025-12-06 04:31:43,123 | INFO     | chi2: 2.775292038249571
[2025-12-06 05:32:15] 2025-12-06 04:31:43,123 | INFO     | current chi2=2.775292038249571 (change=26.031087896795448 %)
[2025-12-06 05:32:15] 2025-12-06 04:31:43,123 | INFO     | sum of square deviations: 21371126282.5
[2025-12-06 05:32:15] 2025-12-06 04:31:43,125 | INFO     | sum of deviations: 306355769224.99994
[2025-12-06 05:32:15] 2025-12-06 04:31:43,125 | INFO     | mean x: 1764982360.5
[2025-12-06 05:32:15] 2025-12-06 04:31:43,125 | INFO     | mean y: 2372151.9902439024
[2025-12-06 05:32:15] 2025-12-06 04:31:43,125 | INFO     | intersect: -25298705646.71719
[2025-12-06 05:32:15] 2025-12-06 04:31:43,125 | INFO     | chi2: 2.7704802365526935
[2025-12-06 05:32:15] 2025-12-06 04:31:43,125 | INFO     | current chi2=2.7704802365526935 (change=0.17338001300621117 %)
[2025-12-06 05:32:15] 2025-12-06 04:31:43,126 | INFO     | right removable region: 409
[2025-12-06 05:32:15] 2025-12-06 04:31:43,126 | INFO     | sum of square deviations: 22162573680.0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,127 | INFO     | sum of deviations: 164417511989.0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,127 | INFO     | mean x: 1764982818.0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,127 | INFO     | mean y: 2383197.255421687
[2025-12-06 05:32:15] 2025-12-06 04:31:43,127 | INFO     | intersect: -13091496955.335863
[2025-12-06 05:32:15] 2025-12-06 04:31:43,128 | INFO     | chi2: 1.4618631530956168
[2025-12-06 05:32:15] 2025-12-06 04:31:43,128 | INFO     | current chi2=1.4618631530956168 (change=61.03745999053696 %)
[2025-12-06 05:32:15] 2025-12-06 04:31:43,128 | INFO     | sum of square deviations: 21371126282.5
[2025-12-06 05:32:15] 2025-12-06 04:31:43,129 | INFO     | sum of deviations: 126912676571.5
[2025-12-06 05:32:15] 2025-12-06 04:31:43,129 | INFO     | mean x: 1764982970.5
[2025-12-06 05:32:15] 2025-12-06 04:31:43,129 | INFO     | mean y: 2390391.519512195
[2025-12-06 05:32:15] 2025-12-06 04:31:43,130 | INFO     | intersect: -10478981059.300833
[2025-12-06 05:32:15] 2025-12-06 04:31:43,130 | INFO     | chi2: 1.0527192854838396
[2025-12-06 05:32:15] 2025-12-06 04:31:43,130 | INFO     | current chi2=1.0527192854838396 (change=27.987836395313813 %)
[2025-12-06 05:32:15] 2025-12-06 04:31:43,130 | INFO     | sum of square deviations: 20598749010.0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,131 | INFO     | sum of deviations: 117205319784.99997
[2025-12-06 05:32:15] 2025-12-06 04:31:43,132 | INFO     | mean x: 1764983123.0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,132 | INFO     | mean y: 2392306.5950617283
[2025-12-06 05:32:15] 2025-12-06 04:31:43,132 | INFO     | intersect: -10040227817.856026
[2025-12-06 05:32:15] 2025-12-06 04:31:43,132 | INFO     | chi2: 1.0476088240034906
[2025-12-06 05:32:15] 2025-12-06 04:31:43,132 | INFO     | current chi2=1.0476088240034906 (change=0.4854533920692996 %)
[2025-12-06 05:32:15] 2025-12-06 04:31:43,132 | INFO     | left removable region: 30
[2025-12-06 05:32:15] 2025-12-06 04:31:43,132 | INFO     | sum of square deviations: 16880800230.0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | sum of deviations: 139711424420.0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | mean x: 1764983245.0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | mean y: 2405511.1372031663
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | intersect: -14605214973.474373
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | chi2: 0.06044417645211461
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | current memory leak: 8.28 B/s (using 379 data points, chi2=0.06)
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | could have reported an average CPU frequency of 3892 MHz (18 samples)
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | ..............................
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | . Timing measurements:
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | . get job = 0 s
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | . initial setup = 1 s
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | . payload setup = 4 s
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | . stage-in = 0 s
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | . payload execution = 25608 s
[2025-12-06 05:32:15] 2025-12-06 04:31:43,134 | INFO     | . stage-out = 1 s
[2025-12-06 05:32:15] 2025-12-06 04:31:43,135 | INFO     | . log creation = 0 s
[2025-12-06 05:32:15] 2025-12-06 04:31:43,135 | INFO     | ..............................
[2025-12-06 05:32:15] 2025-12-06 04:31:43,230 | INFO     | PID=1920002 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-06 05:32:15] 2025-12-06 04:31:43,590 | INFO     | 
[2025-12-06 05:32:15] 2025-12-06 04:31:43,590 | INFO     | job summary report
[2025-12-06 05:32:15] 2025-12-06 04:31:43,590 | INFO     | --------------------------------------------------
[2025-12-06 05:32:15] 2025-12-06 04:31:43,590 | INFO     | PanDA job id: 6897510426
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | task id: 47556173
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | errors: (none)
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | pilot state: finished 
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | transexitcode: 0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | exeerrorcode: 0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | exeerrordiag: 
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | exitcode: 0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | exitmsg: OK
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | cpuconsumptiontime: 100580 s
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | nevents: 1000
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | neventsw: 0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | pid: 1926590
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | pgrp: 1926590
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | corecount: 4
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | event service: False
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | sizes: {0: 2284266, 3: 2284528, 11: 2284556, 25616: 2321902, 25617: 2321901, 25619: 2330957, 25620: 2331141, 25626: 2331387}
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | --------------------------------------------------
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | 
[2025-12-06 05:32:15] 2025-12-06 04:31:43,591 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-06 05:32:15] 2025-12-06 04:31:43,611 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,611 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,611 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,611 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,611 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,611 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | job 6897510426 has completed (purged errors)
[2025-12-06 05:32:15] 2025-12-06 04:31:43,612 | INFO     | overall cleanup function is called
[2025-12-06 05:32:15] 2025-12-06 04:31:44,622 | INFO     | --- collectZombieJob: --- 10, [1926590]
[2025-12-06 05:32:15] 2025-12-06 04:31:44,622 | INFO     | zombie collector waiting for pid 1926590
[2025-12-06 05:32:15] 2025-12-06 04:31:44,622 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-06 05:32:15] 2025-12-06 04:31:44,622 | INFO     | collected zombie processes
[2025-12-06 05:32:15] 2025-12-06 04:31:44,622 | INFO     | will attempt to kill all subprocesses of pid=1926590
[2025-12-06 05:32:15] 2025-12-06 04:31:44,682 | INFO     | process IDs to be killed: [1926590] (in reverse order)
[2025-12-06 05:32:15] 2025-12-06 04:31:44,721 | WARNING  | found no corresponding commands to process id(s)
[2025-12-06 05:32:15] 2025-12-06 04:31:44,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-06 05:32:15] 2025-12-06 04:31:44,724 | INFO     | did not find any defunct processes belonging to 1926590
[2025-12-06 05:32:15] 2025-12-06 04:31:44,726 | INFO     | did not find any defunct processes belonging to 1926590
[2025-12-06 05:32:15] 2025-12-06 04:31:44,726 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-06 05:32:15] 2025-12-06 04:31:44,726 | INFO     | ready for new job
[2025-12-06 05:32:15] 2025-12-06 04:31:44,726 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-06 05:32:15] 2025-12-06 04:31:44,728 | INFO     | ***************************************
[2025-12-06 05:32:15] 2025-12-06 04:31:44,728 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-06 05:32:15] 2025-12-06 04:31:44,728 | INFO     | ***************************************
[2025-12-06 05:32:15] 2025-12-06 04:31:44,728 | INFO     | 
[2025-12-06 05:32:15] 2025-12-06 04:31:44,728 | INFO     | architecture information:
[2025-12-06 05:32:15] 2025-12-06 04:31:44,729 | INFO     | executing command: cat /etc/os-release
[2025-12-06 05:32:15] 2025-12-06 04:31:44,743 | INFO     | cat /etc/os-release:
[2025-12-06 05:32:15] NAME="CentOS Linux"
[2025-12-06 05:32:15] VERSION="7 (Core)"
[2025-12-06 05:32:15] ID="centos"
[2025-12-06 05:32:15] ID_LIKE="rhel fedora"
[2025-12-06 05:32:15] VERSION_ID="7"
[2025-12-06 05:32:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-06 05:32:15] ANSI_COLOR="0;31"
[2025-12-06 05:32:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-06 05:32:15] HOME_URL="https://www.centos.org/"
[2025-12-06 05:32:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-06 05:32:15] 
[2025-12-06 05:32:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-06 05:32:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-06 05:32:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-06 05:32:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-06 05:32:15] 
[2025-12-06 05:32:15] 2025-12-06 04:31:44,743 | INFO     | ***************************************
[2025-12-06 05:32:15] 2025-12-06 04:31:45,246 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-06 05:32:15] 2025-12-06 04:31:45,265 | INFO     | sufficient remaining disk space (224684670976 B)
[2025-12-06 05:32:15] 2025-12-06 04:31:45,265 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-06 05:32:15] 2025-12-06 04:31:45,265 | INFO     | current server update state: UPDATING_FINAL
[2025-12-06 05:32:15] 2025-12-06 04:31:45,265 | INFO     | update_server=False
[2025-12-06 05:32:15] 2025-12-06 04:31:45,265 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-06 05:32:15] 2025-12-06 04:31:45,265 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-06 05:32:15] 2025-12-06 04:31:45,544 | INFO     | all payload control threads have been joined
[2025-12-06 05:32:15] 2025-12-06 04:31:46,019 | INFO     | all data control threads have been joined
[2025-12-06 05:32:15] 2025-12-06 04:31:46,034 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-06 05:32:15] 2025-12-06 04:31:46,034 | INFO     | aborting loop
[2025-12-06 05:32:15] 2025-12-06 04:31:46,271 | INFO     | [job] retrieve thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:46,422 | INFO     | all job control threads have been joined
[2025-12-06 05:32:15] 2025-12-06 04:31:46,444 | INFO     | [payload] validate_post thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:46,550 | INFO     | [payload] control thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:46,827 | INFO     | [payload] execute_payloads thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:46,973 | INFO     | [data] copytool_in thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:47,025 | INFO     | [data] control thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:47,040 | INFO     | [job] job monitor thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:47,270 | INFO     | [data] copytool_out thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:47,368 | INFO     | [payload] failed_post thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:47,421 | INFO     | [job] validate thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:47,427 | INFO     | [job] control thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:47,430 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-06 05:32:15] 2025-12-06 04:31:47,580 | INFO     | [job] create_data_payload thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:47,761 | INFO     | [payload] validate_pre thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:47,768 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:48,188 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-06 05:32:15] 2025-12-06 04:31:49,194 | INFO     | [job] queue monitor thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:51,436 | INFO     | [data] queue_monitor thread has finished
[2025-12-06 05:32:15] 2025-12-06 04:31:56,283 | INFO     | [monitor] cgroup control has ended
[2025-12-06 05:32:15] 2025-12-06 04:31:57,739 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140612587235136)>', '<ExcThread(monitor, started 140611650840320)>']
[2025-12-06 05:32:15] 2025-12-06 04:32:02,747 | INFO     | all workflow threads have been joined
[2025-12-06 05:32:15] 2025-12-06 04:32:02,747 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-06 05:32:15] 2025-12-06 04:32:02,747 | INFO     | traces error code: 0
[2025-12-06 05:32:15] 2025-12-06 04:32:02,747 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-06 05:32:15] 2025-12-06 04:32:15,406 | INFO     | PID=1920002 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-06 05:32:15] 2025-12-06 04:32:15,407 | INFO     | found 0 job(s) in 20 queues
[2025-12-06 05:32:15] 2025-12-06 04:32:15,407 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-06 05:32:15] 2025-12-06 04:32:15,407 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-06 05:32:15] 2025-12-06 04:32:15,407 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-06 05:32:15] 2025-12-06 04:32:15,407 | INFO     | [monitor] control thread has ended
[2025-12-06 05:32:15] 2025-12-06 04:32:15,491 [wrapper] ==== pilot stdout END ====
[2025-12-06 05:32:15] 2025-12-06 04:32:15,495 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-06 05:32:15] 2025-12-06 04:32:15,499 [wrapper] pilotpid: 1920002
[2025-12-06 05:32:15] 2025-12-06 04:32:15,502 [wrapper] Pilot exit status: 0
[2025-12-06 05:32:15] 2025-12-06 04:32:15,514 [wrapper] pandaids: 6897510426
[2025-12-06 05:32:15] 2025-12-06 04:32:15,540 [wrapper] cleanup supervisor_pilot 1976294 1920003
[2025-12-06 05:32:15] 2025-12-06 04:32:15,544 [wrapper] Test setup, not cleaning
[2025-12-06 05:32:15] 2025-12-06 04:32:15,548 [wrapper] apfmon messages muted
[2025-12-06 05:32:15] 2025-12-06 04:32:15,551 [wrapper] ==== wrapper stdout END ====
[2025-12-06 05:32:15] 2025-12-06 04:32:15,555 [wrapper] ==== wrapper stderr END ====
[2025-12-06 05:32:15]  *** Error codes and diagnostics ***
[2025-12-06 05:32:15]     "exeErrorCode": 0,
[2025-12-06 05:32:15]     "exeErrorDiag": "",
[2025-12-06 05:32:15]     "pilotErrorCode": 0,
[2025-12-06 05:32:15]     "pilotErrorDiag": "",
[2025-12-06 05:32:15]  *** Listing of results directory ***
[2025-12-06 05:32:15] total 1312952
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-12-06 05:32:15] -rwx------ 1 boinc boinc     36292 Nov 25 18:01 runpilot2-wrapper.sh
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc      5112 Nov 25 18:02 queuedata.json
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc       100 Dec  5 22:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-06 05:32:15] -rwxr-xr-x 1 boinc boinc      7986 Dec  5 22:24 run_atlas
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc       105 Dec  5 22:24 job.xml
[2025-12-06 05:32:15] -rw-r--r-- 2 boinc boinc 411183895 Dec  5 22:24 EVNT.47483658._003109.pool.root.1
[2025-12-06 05:32:15] -rw-r--r-- 2 boinc boinc    590110 Dec  5 22:24 input.tar.gz
[2025-12-06 05:32:15] -rw-r--r-- 2 boinc boinc     15847 Dec  5 22:24 start_atlas.sh
[2025-12-06 05:32:15] drwxrwx--x 2 boinc boinc      4096 Dec  5 22:24 shared
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc         0 Dec  5 22:24 boinc_setup_complete
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc      6380 Dec  5 22:24 init_data.xml
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc         0 Dec  5 22:24 boinc_lockfile
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc      2785 Dec  5 22:24 pandaJob.out
[2025-12-06 05:32:15] -rw------- 1 boinc boinc    985852 Dec  5 22:24 agis_schedconf.cvmfs.json
[2025-12-06 05:32:15] drwx------ 5 boinc boinc      4096 Dec  5 22:24 pilot3
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc       532 Dec  6 05:27 boinc_task_state.xml
[2025-12-06 05:32:15] -rw------- 1 boinc boinc 919605121 Dec  6 05:31 HITS.47556173._000843.pool.root.1
[2025-12-06 05:32:15] -rw------- 1 boinc boinc      1026 Dec  6 05:31 memory_monitor_summary.json
[2025-12-06 05:32:15] -rw------- 1 boinc boinc   1516240 Dec  6 05:31 agis_ddmendpoints.agis.ALL.json
[2025-12-06 05:32:15] -rw------- 1 boinc boinc   1268098 Dec  6 05:31 log.47556173._000843.job.log.tgz.1
[2025-12-06 05:32:15] -rw------- 1 boinc boinc      8574 Dec  6 05:31 heartbeat.json
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc      8192 Dec  6 05:32 boinc_mmap_file
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc        29 Dec  6 05:32 wrapper_checkpoint.txt
[2025-12-06 05:32:15] -rw------- 1 boinc boinc       747 Dec  6 05:32 pilotlog.txt
[2025-12-06 05:32:15] -rw------- 1 boinc boinc        95 Dec  6 05:32 pilot_heartbeat.json
[2025-12-06 05:32:15] -rw------- 1 boinc boinc   3613892 Dec  6 05:32 log.47556173._000843.job.log.1
[2025-12-06 05:32:15] -rw------- 1 boinc boinc       353 Dec  6 05:32 output.list
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc       620 Dec  6 05:32 runtime_log
[2025-12-06 05:32:15] -rw------- 1 boinc boinc   4904960 Dec  6 05:32 result.tar.gz
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc      8903 Dec  6 05:32 runtime_log.err
[2025-12-06 05:32:15] -rw------- 1 boinc boinc       667 Dec  6 05:32 hpjMDmJbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJhJKDmxwApvn.diag
[2025-12-06 05:32:15] -rw-r--r-- 1 boinc boinc     21165 Dec  6 05:32 stderr.txt
[2025-12-06 05:32:15] HITS file was successfully produced:
[2025-12-06 05:32:15] -rw------- 1 boinc boinc 919605121 Dec  6 05:31 shared/HITS.pool.root.1
[2025-12-06 05:32:15]  *** Contents of shared directory: ***
[2025-12-06 05:32:15] total 1304996
[2025-12-06 05:32:15] -rw-r--r-- 2 boinc boinc 411183895 Dec  5 22:24 ATLAS.root_0
[2025-12-06 05:32:15] -rw-r--r-- 2 boinc boinc    590110 Dec  5 22:24 input.tar.gz
[2025-12-06 05:32:15] -rw-r--r-- 2 boinc boinc     15847 Dec  5 22:24 start_atlas.sh
[2025-12-06 05:32:15] -rw------- 1 boinc boinc 919605121 Dec  6 05:31 HITS.pool.root.1
[2025-12-06 05:32:15] -rw------- 1 boinc boinc   4904960 Dec  6 05:32 result.tar.gz
05:32:17 (1916204): run_atlas exited; CPU time 100570.148382
05:32:17 (1916204): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN