Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:23:38 (4342): wrapper (7.7.26015): starting
05:23:38 (4342): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 05:23:38] Arguments: --nthreads 12
[2025-12-02 05:23:38] Threads: 12
[2025-12-02 05:23:38] Checking for CVMFS
[2025-12-02 05:23:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 05:23:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 05:23:38] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 05:23:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 05:23:38] 2.11.2.0 10903 14662 90748 153552 2 68 15256573 20275200 1 130560 0 6527896 99.799 1670457 41404 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 05:23:38] CVMFS is ok
[2025-12-02 05:23:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 05:23:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 05:23:38] Further information can be found at the LHC@home message board.
[2025-12-02 05:23:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 05:23:38] Checking for apptainer binary...
[2025-12-02 05:23:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 05:23:38] Running /usr/bin/apptainer --version
[2025-12-02 05:23:38] apptainer version 1.3.2-1.el7
[2025-12-02 05:23:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 05:23:40] c-205-22.aglt2.org
[2025-12-02 05:23:40] apptainer works
[2025-12-02 05:23:40] Set ATHENA_PROC_NUMBER=12
[2025-12-02 05:23:40] Set ATHENA_CORE_NUMBER=12
[2025-12-02 05:23:40] Starting ATLAS job with PandaID=6901110291
[2025-12-02 05:23:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 11:47:38]  *** The last 200 lines of the pilot log: ***
[2025-12-02 11:47:38] 2025-12-02 16:46:34,715 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 11:47:38] 2025-12-02 16:46:34,721 | INFO     | fitting pss+swap vs Time
[2025-12-02 11:47:38] 2025-12-02 16:46:34,722 | INFO     | sum of square deviations: 16483299317.529192
[2025-12-02 11:47:38] 2025-12-02 16:46:34,725 | INFO     | sum of deviations: 241688292948.27933
[2025-12-02 11:47:38] 2025-12-02 16:46:34,725 | INFO     | mean x: 1764682508.6090426
[2025-12-02 11:47:38] 2025-12-02 16:46:34,725 | INFO     | mean y: 3994067.859042553
[2025-12-02 11:47:38] 2025-12-02 16:46:34,725 | INFO     | intersect: -25870868414.78976
[2025-12-02 11:47:38] 2025-12-02 16:46:34,726 | INFO     | chi2: 6.299656548385087
[2025-12-02 11:47:38] 2025-12-02 16:46:34,726 | INFO     | sum of square deviations: 15834443842.469025
[2025-12-02 11:47:38] 2025-12-02 16:46:34,730 | INFO     | sum of deviations: 395013877825.3745
[2025-12-02 11:47:38] 2025-12-02 16:46:34,730 | INFO     | mean x: 1764682356.110512
[2025-12-02 11:47:38] 2025-12-02 16:46:34,730 | INFO     | mean y: 4030052.1859838273
[2025-12-02 11:47:38] 2025-12-02 16:46:34,730 | INFO     | intersect: -44018609931.394196
[2025-12-02 11:47:38] 2025-12-02 16:46:34,730 | INFO     | chi2: 3.723694314134054
[2025-12-02 11:47:38] 2025-12-02 16:46:34,730 | INFO     | current chi2=3.723694314134054 (change=40.8905186253587 %)
[2025-12-02 11:47:38] 2025-12-02 16:46:34,731 | INFO     | sum of square deviations: 15202844504.907066
[2025-12-02 11:47:38] 2025-12-02 16:46:34,734 | INFO     | sum of deviations: 491351073218.77545
[2025-12-02 11:47:38] 2025-12-02 16:46:34,734 | INFO     | mean x: 1764682203.612022
[2025-12-02 11:47:38] 2025-12-02 16:46:34,734 | INFO     | mean y: 4053290.0054644807
[2025-12-02 11:47:38] 2025-12-02 16:46:34,734 | INFO     | intersect: -57029911265.44145
[2025-12-02 11:47:38] 2025-12-02 16:46:34,735 | INFO     | chi2: 2.641379647055319
[2025-12-02 11:47:38] 2025-12-02 16:46:34,735 | INFO     | current chi2=2.641379647055319 (change=29.065615374779437 %)
[2025-12-02 11:47:38] 2025-12-02 16:46:34,735 | INFO     | sum of square deviations: 14588246659.56787
[2025-12-02 11:47:38] 2025-12-02 16:46:34,738 | INFO     | sum of deviations: 486701931091.479
[2025-12-02 11:47:38] 2025-12-02 16:46:34,738 | INFO     | mean x: 1764682051.1108034
[2025-12-02 11:47:38] 2025-12-02 16:46:34,738 | INFO     | mean y: 4052112.3130193907
[2025-12-02 11:47:38] 2025-12-02 16:46:34,739 | INFO     | intersect: -58870340546.4372
[2025-12-02 11:47:38] 2025-12-02 16:46:34,739 | INFO     | chi2: 2.6019985267248256
[2025-12-02 11:47:38] 2025-12-02 16:46:34,739 | INFO     | current chi2=2.6019985267248256 (change=1.4909299530037785 %)
[2025-12-02 11:47:38] 2025-12-02 16:46:34,739 | INFO     | right removable region: 360
[2025-12-02 11:47:38] 2025-12-02 16:46:34,740 | INFO     | sum of square deviations: 15834418832.469028
[2025-12-02 11:47:38] 2025-12-02 16:46:34,743 | INFO     | sum of deviations: 90170159648.8786
[2025-12-02 11:47:38] 2025-12-02 16:46:34,743 | INFO     | mean x: 1764682661.110512
[2025-12-02 11:47:38] 2025-12-02 16:46:34,743 | INFO     | mean y: 4029572.9541778974
[2025-12-02 11:47:38] 2025-12-02 16:46:34,743 | INFO     | intersect: -10045074152.637453
[2025-12-02 11:47:38] 2025-12-02 16:46:34,744 | INFO     | chi2: 3.821144469539139
[2025-12-02 11:47:38] 2025-12-02 16:46:34,744 | INFO     | current chi2=3.821144469539139 (change=39.343606430120595 %)
[2025-12-02 11:47:38] 2025-12-02 16:46:34,744 | INFO     | sum of square deviations: 15202794484.907064
[2025-12-02 11:47:38] 2025-12-02 16:46:34,747 | INFO     | sum of deviations: 60556606072.22962
[2025-12-02 11:47:38] 2025-12-02 16:46:34,747 | INFO     | mean x: 1764682813.612022
[2025-12-02 11:47:38] 2025-12-02 16:46:34,747 | INFO     | mean y: 4036712.8114754097
[2025-12-02 11:47:38] 2025-12-02 16:46:34,748 | INFO     | intersect: -7025144803.285976
[2025-12-02 11:47:38] 2025-12-02 16:46:34,748 | INFO     | chi2: 3.768620681265003
[2025-12-02 11:47:38] 2025-12-02 16:46:34,748 | INFO     | current chi2=3.768620681265003 (change=1.3745564631967673 %)
[2025-12-02 11:47:38] 2025-12-02 16:46:34,748 | INFO     | left removable region: 20
[2025-12-02 11:47:38] 2025-12-02 16:46:34,749 | INFO     | sum of square deviations: 12187600928.973568
[2025-12-02 11:47:38] 2025-12-02 16:46:34,751 | INFO     | sum of deviations: 271117934876.86163
[2025-12-02 11:47:38] 2025-12-02 16:46:34,751 | INFO     | mean x: 1764682630.6088235
[2025-12-02 11:47:38] 2025-12-02 16:46:34,751 | INFO     | mean y: 4106791.1794117647
[2025-12-02 11:47:38] 2025-12-02 16:46:34,752 | INFO     | intersect: -39251946415.02165
[2025-12-02 11:47:38] 2025-12-02 16:46:34,752 | INFO     | chi2: 0.01963047884249425
[2025-12-02 11:47:38] 2025-12-02 16:46:34,752 | INFO     | current memory leak: 22.25 B/s (using 340 data points, chi2=0.02)
[2025-12-02 11:47:38] 2025-12-02 16:46:34,752 | INFO     | could have reported an average CPU frequency of 2382 MHz (16 samples)
[2025-12-02 11:47:38] 2025-12-02 16:46:34,753 | INFO     | ..............................
[2025-12-02 11:47:38] 2025-12-02 16:46:34,753 | INFO     | . Timing measurements:
[2025-12-02 11:47:38] 2025-12-02 16:46:34,753 | INFO     | . get job = 0 s
[2025-12-02 11:47:38] 2025-12-02 16:46:34,753 | INFO     | . initial setup = 2 s
[2025-12-02 11:47:38] 2025-12-02 16:46:34,753 | INFO     | . payload setup = 13 s
[2025-12-02 11:47:38] 2025-12-02 16:46:34,753 | INFO     | . stage-in = 0 s
[2025-12-02 11:47:38] 2025-12-02 16:46:34,753 | INFO     | . payload execution = 22914 s
[2025-12-02 11:47:38] 2025-12-02 16:46:34,753 | INFO     | . stage-out = 3 s
[2025-12-02 11:47:38] 2025-12-02 16:46:34,753 | INFO     | . log creation = 0 s
[2025-12-02 11:47:38] 2025-12-02 16:46:34,754 | INFO     | ..............................
[2025-12-02 11:47:38] 2025-12-02 16:46:34,836 | INFO     | 
[2025-12-02 11:47:38] 2025-12-02 16:46:34,836 | INFO     | job summary report
[2025-12-02 11:47:38] 2025-12-02 16:46:34,836 | INFO     | --------------------------------------------------
[2025-12-02 11:47:38] 2025-12-02 16:46:34,837 | INFO     | PanDA job id: 6901110291
[2025-12-02 11:47:38] 2025-12-02 16:46:34,837 | INFO     | task id: 47531058
[2025-12-02 11:47:38] 2025-12-02 16:46:34,837 | INFO     | errors: (none)
[2025-12-02 11:47:38] 2025-12-02 16:46:34,837 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 11:47:38] 2025-12-02 16:46:34,837 | INFO     | pilot state: finished 
[2025-12-02 11:47:38] 2025-12-02 16:46:34,838 | INFO     | transexitcode: 0
[2025-12-02 11:47:38] 2025-12-02 16:46:34,838 | INFO     | exeerrorcode: 0
[2025-12-02 11:47:38] 2025-12-02 16:46:34,838 | INFO     | exeerrordiag: 
[2025-12-02 11:47:38] 2025-12-02 16:46:34,838 | INFO     | exitcode: 0
[2025-12-02 11:47:38] 2025-12-02 16:46:34,838 | INFO     | exitmsg: OK
[2025-12-02 11:47:38] 2025-12-02 16:46:34,839 | INFO     | cpuconsumptiontime: 257362 s
[2025-12-02 11:47:38] 2025-12-02 16:46:34,839 | INFO     | nevents: 1000
[2025-12-02 11:47:38] 2025-12-02 16:46:34,839 | INFO     | neventsw: 0
[2025-12-02 11:47:38] 2025-12-02 16:46:34,839 | INFO     | pid: 16060
[2025-12-02 11:47:38] 2025-12-02 16:46:34,839 | INFO     | pgrp: 16060
[2025-12-02 11:47:38] 2025-12-02 16:46:34,840 | INFO     | corecount: 12
[2025-12-02 11:47:38] 2025-12-02 16:46:34,840 | INFO     | event service: False
[2025-12-02 11:47:38] 2025-12-02 16:46:34,840 | INFO     | sizes: {0: 2284453, 5: 2284715, 11: 2284771, 22931: 2340540, 22934: 2349534, 22938: 2349590, 22943: 2349964}
[2025-12-02 11:47:38] 2025-12-02 16:46:34,840 | INFO     | --------------------------------------------------
[2025-12-02 11:47:38] 2025-12-02 16:46:34,840 | INFO     | 
[2025-12-02 11:47:38] 2025-12-02 16:46:34,841 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-02 11:47:38] 2025-12-02 16:46:34,865 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,866 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,866 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,866 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,866 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,866 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,867 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,867 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,867 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,867 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,867 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,868 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,868 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,868 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,868 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,868 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,869 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,869 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 11:47:38] 2025-12-02 16:46:34,869 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,869 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 11:47:38] 2025-12-02 16:46:34,869 | INFO     | job 6901110291 has completed (purged errors)
[2025-12-02 11:47:38] 2025-12-02 16:46:34,869 | INFO     | overall cleanup function is called
[2025-12-02 11:47:38] 2025-12-02 16:46:34,968 | INFO     | PID=8019 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 11:47:38] 2025-12-02 16:46:35,891 | INFO     | --- collectZombieJob: --- 10, [16060]
[2025-12-02 11:47:38] 2025-12-02 16:46:35,891 | INFO     | zombie collector waiting for pid 16060
[2025-12-02 11:47:38] 2025-12-02 16:46:35,891 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 11:47:38] 2025-12-02 16:46:35,891 | INFO     | collected zombie processes
[2025-12-02 11:47:38] 2025-12-02 16:46:35,892 | INFO     | will attempt to kill all subprocesses of pid=16060
[2025-12-02 11:47:38] 2025-12-02 16:46:35,983 | INFO     | process IDs to be killed: [16060] (in reverse order)
[2025-12-02 11:47:38] 2025-12-02 16:46:36,034 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 11:47:38] 2025-12-02 16:46:36,034 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 11:47:38] 2025-12-02 16:46:36,037 | INFO     | did not find any defunct processes belonging to 16060
[2025-12-02 11:47:38] 2025-12-02 16:46:36,039 | INFO     | did not find any defunct processes belonging to 16060
[2025-12-02 11:47:38] 2025-12-02 16:46:36,041 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 11:47:38] 2025-12-02 16:46:36,042 | INFO     | ready for new job
[2025-12-02 11:47:38] 2025-12-02 16:46:36,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 11:47:38] 2025-12-02 16:46:36,044 | INFO     | ***************************************
[2025-12-02 11:47:38] 2025-12-02 16:46:36,044 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 11:47:38] 2025-12-02 16:46:36,044 | INFO     | ***************************************
[2025-12-02 11:47:38] 2025-12-02 16:46:36,044 | INFO     | 
[2025-12-02 11:47:38] 2025-12-02 16:46:36,045 | INFO     | architecture information:
[2025-12-02 11:47:38] 2025-12-02 16:46:36,045 | INFO     | executing command: cat /etc/os-release
[2025-12-02 11:47:38] 2025-12-02 16:46:36,060 | INFO     | cat /etc/os-release:
[2025-12-02 11:47:38] NAME="CentOS Linux"
[2025-12-02 11:47:38] VERSION="7 (Core)"
[2025-12-02 11:47:38] ID="centos"
[2025-12-02 11:47:38] ID_LIKE="rhel fedora"
[2025-12-02 11:47:38] VERSION_ID="7"
[2025-12-02 11:47:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 11:47:38] ANSI_COLOR="0;31"
[2025-12-02 11:47:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 11:47:38] HOME_URL="https://www.centos.org/"
[2025-12-02 11:47:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 11:47:38] 
[2025-12-02 11:47:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 11:47:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 11:47:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 11:47:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 11:47:38] 
[2025-12-02 11:47:38] 2025-12-02 16:46:36,061 | INFO     | ***************************************
[2025-12-02 11:47:38] 2025-12-02 16:46:36,564 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-02 11:47:38] 2025-12-02 16:46:36,581 | INFO     | sufficient remaining disk space (28529655808 B)
[2025-12-02 11:47:38] 2025-12-02 16:46:36,581 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 11:47:38] 2025-12-02 16:46:36,582 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 11:47:38] 2025-12-02 16:46:36,582 | INFO     | update_server=False
[2025-12-02 11:47:38] 2025-12-02 16:46:36,582 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 11:47:38] 2025-12-02 16:46:36,582 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 11:47:38] 2025-12-02 16:46:36,583 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 11:47:38] 2025-12-02 16:46:36,597 | INFO     | all job control threads have been joined
[2025-12-02 11:47:38] 2025-12-02 16:46:36,615 | INFO     | all data control threads have been joined
[2025-12-02 11:47:38] 2025-12-02 16:46:36,754 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 11:47:38] 2025-12-02 16:46:36,755 | INFO     | aborting loop
[2025-12-02 11:47:38] 2025-12-02 16:46:36,877 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 11:47:38] 2025-12-02 16:46:37,588 | INFO     | [job] retrieve thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:37,588 | INFO     | [job] queue monitor thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:37,602 | INFO     | [job] control thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:37,620 | INFO     | [data] control thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:37,743 | INFO     | all payload control threads have been joined
[2025-12-02 11:47:38] 2025-12-02 16:46:37,760 | INFO     | [job] job monitor thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:37,863 | INFO     | [payload] failed_post thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:38,170 | INFO     | [job] validate thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:38,686 | INFO     | [payload] validate_post thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:38,749 | INFO     | [payload] control thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:38,859 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:38,860 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:38,882 | INFO     | [data] copytool_out thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:38,972 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:39,046 | INFO     | [data] copytool_in thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:40,589 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:46:47,363 | INFO     | job.realtimelogging is not enabled
[2025-12-02 11:47:38] 2025-12-02 16:46:48,368 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 11:47:38] 2025-12-02 16:47:07,166 | INFO     | PID=8019 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 11:47:38] 2025-12-02 16:47:07,167 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 11:47:38] 2025-12-02 16:47:07,167 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 11:47:38] 2025-12-02 16:47:07,167 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 11:47:38] 2025-12-02 16:47:32,186 | INFO     | [monitor] cgroup control has ended
[2025-12-02 11:47:38] 2025-12-02 16:47:32,751 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139712009606976)>', '<ExcThread(monitor, started 139711561578240)>']
[2025-12-02 11:47:38] 2025-12-02 16:47:33,295 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 11:47:38] 2025-12-02 16:47:33,295 | INFO     | [monitor] control thread has ended
[2025-12-02 11:47:38] 2025-12-02 16:47:37,772 | INFO     | all workflow threads have been joined
[2025-12-02 11:47:38] 2025-12-02 16:47:37,772 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 11:47:38] 2025-12-02 16:47:37,772 | INFO     | traces error code: 0
[2025-12-02 11:47:38] 2025-12-02 16:47:37,772 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 11:47:38] 2025-12-02 16:47:37,864 [wrapper] ==== pilot stdout END ====
[2025-12-02 11:47:38] 2025-12-02 16:47:37,868 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 11:47:38] 2025-12-02 16:47:37,871 [wrapper] pilotpid: 8019
[2025-12-02 11:47:38] 2025-12-02 16:47:37,875 [wrapper] Pilot exit status: 0
[2025-12-02 11:47:38] 2025-12-02 16:47:37,889 [wrapper] pandaids: 6901110291
[2025-12-02 11:47:38] 2025-12-02 16:47:37,937 [wrapper] cleanup supervisor_pilot 23134 8020
[2025-12-02 11:47:38] 2025-12-02 16:47:37,941 [wrapper] Test setup, not cleaning
[2025-12-02 11:47:38] 2025-12-02 16:47:37,945 [wrapper] apfmon messages muted
[2025-12-02 11:47:38] 2025-12-02 16:47:37,949 [wrapper] ==== wrapper stdout END ====
[2025-12-02 11:47:38] 2025-12-02 16:47:37,953 [wrapper] ==== wrapper stderr END ====
[2025-12-02 11:47:38]  *** Error codes and diagnostics ***
[2025-12-02 11:47:38]     "exeErrorCode": 0,
[2025-12-02 11:47:38]     "exeErrorDiag": "",
[2025-12-02 11:47:38]     "pilotErrorCode": 0,
[2025-12-02 11:47:38]     "pilotErrorDiag": "",
[2025-12-02 11:47:38]  *** Listing of results directory ***
[2025-12-02 11:47:38] total 1064812
[2025-12-02 11:47:38] -rw-r--r-- 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-02 11:47:38] -rwx------ 1 boincer umatlas     36292 Nov 29 04:22 runpilot2-wrapper.sh
[2025-12-02 11:47:38] -rw-r--r-- 1 boincer umatlas      5112 Nov 29 04:26 queuedata.json
[2025-12-02 11:47:38] -rw-r--r-- 1 boincer umatlas       100 Dec  2 05:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 11:47:38] -rwxr-xr-x 1 boincer umatlas      7986 Dec  2 05:23 run_atlas
[2025-12-02 11:47:38] -rw-r--r-- 1 boincer umatlas       105 Dec  2 05:23 job.xml
[2025-12-02 11:47:38] -rw-r--r-- 2 boincer umatlas 380847199 Dec  2 05:23 EVNT.47531050._000549.pool.root.1
[2025-12-02 11:47:38] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 05:23 start_atlas.sh
[2025-12-02 11:47:38] drwxrwx--x 2 boincer umatlas      4096 Dec  2 05:23 shared
[2025-12-02 11:47:38] -rw-r--r-- 2 boincer umatlas    590118 Dec  2 05:23 input.tar.gz
[2025-12-02 11:47:38] -rw-r--r-- 1 boincer umatlas         0 Dec  2 05:23 boinc_lockfile
[2025-12-02 11:47:38] -rw-r--r-- 1 boincer umatlas      2880 Dec  2 05:23 pandaJob.out
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas        57 Dec  2 05:23 setup.sh.local
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas    986775 Dec  2 05:23 agis_schedconf.cvmfs.json
[2025-12-02 11:47:38] drwx------ 5 boincer umatlas      4096 Dec  2 05:23 pilot3
[2025-12-02 11:47:38] -rw-r--r-- 1 boincer umatlas       532 Dec  2 11:35 boinc_task_state.xml
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas 694673318 Dec  2 11:46 HITS.47531058._001644.pool.root.1
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas        95 Dec  2 11:46 pilot_heartbeat.json
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas      1063 Dec  2 11:46 memory_monitor_summary.json
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas   1516240 Dec  2 11:46 agis_ddmendpoints.agis.ALL.json
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas   2228195 Dec  2 11:46 log.47531058._001644.job.log.tgz.1
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas     28876 Dec  2 11:46 heartbeat.json
[2025-12-02 11:47:38] -rw-r--r-- 1 boincer umatlas      5956 Dec  2 11:47 init_data.xml
[2025-12-02 11:47:38] -rw-r--r-- 1 boincer umatlas      8192 Dec  2 11:47 boinc_mmap_file
[2025-12-02 11:47:38] -rw-r--r-- 1 boincer umatlas        29 Dec  2 11:47 wrapper_checkpoint.txt
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas      4817 Dec  2 11:47 pilotlog.txt
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas   3221593 Dec  2 11:47 log.47531058._001644.job.log.1
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas       353 Dec  2 11:47 output.list
[2025-12-02 11:47:38] -rw-r--r-- 1 boincer umatlas       620 Dec  2 11:47 runtime_log
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas   5488640 Dec  2 11:47 result.tar.gz
[2025-12-02 11:47:38] -rw-r--r-- 1 boincer umatlas      9345 Dec  2 11:47 runtime_log.err
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas       670 Dec  2 11:47 m8KNDm8KWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9APKDmiLETqm.diag
[2025-12-02 11:47:38] -rw-r--r-- 1 boincer umatlas     21196 Dec  2 11:47 stderr.txt
[2025-12-02 11:47:38] HITS file was successfully produced:
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas 694673318 Dec  2 11:46 shared/HITS.pool.root.1
[2025-12-02 11:47:38]  *** Contents of shared directory: ***
[2025-12-02 11:47:38] total 1056276
[2025-12-02 11:47:38] -rw-r--r-- 2 boincer umatlas 380847199 Dec  2 05:23 ATLAS.root_0
[2025-12-02 11:47:38] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 05:23 start_atlas.sh
[2025-12-02 11:47:38] -rw-r--r-- 2 boincer umatlas    590118 Dec  2 05:23 input.tar.gz
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas 694673318 Dec  2 11:46 HITS.pool.root.1
[2025-12-02 11:47:38] -rw------- 1 boincer umatlas   5488640 Dec  2 11:47 result.tar.gz
11:47:39 (4342): run_atlas exited; CPU time 250028.909848
11:47:39 (4342): called boinc_finish(0)

</stderr_txt>
]]>

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