Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
14:22:51 (17318): wrapper (7.7.26015): starting
14:22:51 (17318): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 14:22:51] Arguments: --nthreads 8
[2025-12-02 14:22:51] Threads: 8
[2025-12-02 14:22:51] Checking for CVMFS
[2025-12-02 14:22:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 14:22:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 14:22:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 14:22:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 14:22:51] 2.11.0.0 8643 74247 110812 153550 3 190 3447162 4096001 917 130560 0 8909745 99.702 4754576 500 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 14:22:51] CVMFS is ok
[2025-12-02 14:22:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 14:22:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 14:22:51] Further information can be found at the LHC@home message board.
[2025-12-02 14:22:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 14:22:51] Checking for apptainer binary...
[2025-12-02 14:22:51] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 14:22:51] apptainer is not installed, using version from CVMFS
[2025-12-02 14:22:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 14:22:51] WARNING: Environment variable TMPDIR already has value [/tmp/job_10943587/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node013
[2025-12-02 14:22:51] apptainer works
[2025-12-02 14:22:51] Set ATHENA_PROC_NUMBER=8
[2025-12-02 14:22:51] Set ATHENA_CORE_NUMBER=8
[2025-12-02 14:22:51] Starting ATLAS job with PandaID=6900371401
[2025-12-02 14:22:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10943587/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 18:05:25]  *** The last 200 lines of the pilot log: ***
[2025-12-02 18:05:25] 2025-12-02 17:04:49,022 | INFO     | number of running child processes to parent process 28421: 1
[2025-12-02 18:05:25] 2025-12-02 17:04:49,022 | INFO     | maximum number of monitored processes: 16
[2025-12-02 18:05:25] 2025-12-02 17:04:50,020 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 18:05:25] 2025-12-02 17:04:50,025 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 3078.7327187500005
[2025-12-02 18:05:25] 2025-12-02 17:04:50,030 | INFO     | using path: /tmp/job_10943587/atlas/pilot/slots/0/PanDA_Pilot-6900371401/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 18:05:25] 2025-12-02 17:04:50,030 | INFO     | extracted standard info from prmon json
[2025-12-02 18:05:25] 2025-12-02 17:04:50,030 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 18:05:25] 2025-12-02 17:04:50,030 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 18:05:25] 2025-12-02 17:04:50,032 | INFO     | fitting pss+swap vs Time
[2025-12-02 18:05:25] 2025-12-02 17:04:50,032 | INFO     | sum of square deviations: 3212467674.5
[2025-12-02 18:05:25] 2025-12-02 17:04:50,033 | INFO     | sum of deviations: 1540528492114.5002
[2025-12-02 18:05:25] 2025-12-02 17:04:50,033 | INFO     | mean x: 1764688424.5
[2025-12-02 18:05:25] 2025-12-02 17:04:50,033 | INFO     | mean y: 5932204.02293578
[2025-12-02 18:05:25] 2025-12-02 17:04:50,033 | INFO     | intersect: -846244699117.9011
[2025-12-02 18:05:25] 2025-12-02 17:04:50,033 | INFO     | chi2: 4.850179622382499
[2025-12-02 18:05:25] 2025-12-02 17:04:50,034 | INFO     | sum of square deviations: 2996454322.0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,034 | INFO     | sum of deviations: 1570035444475.0002
[2025-12-02 18:05:25] 2025-12-02 17:04:50,034 | INFO     | mean x: 1764688272.0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,034 | INFO     | mean y: 5952043.056338028
[2025-12-02 18:05:25] 2025-12-02 17:04:50,034 | INFO     | intersect: -924627911102.26
[2025-12-02 18:05:25] 2025-12-02 17:04:50,035 | INFO     | chi2: 2.9606861541229157
[2025-12-02 18:05:25] 2025-12-02 17:04:50,035 | INFO     | current chi2=2.9606861541229157 (change=38.95718541103079 %)
[2025-12-02 18:05:25] 2025-12-02 17:04:50,035 | INFO     | sum of square deviations: 2790348132.0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,035 | INFO     | sum of deviations: 1486910660966.0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,035 | INFO     | mean x: 1764688119.5
[2025-12-02 18:05:25] 2025-12-02 17:04:50,035 | INFO     | mean y: 5890528.201923077
[2025-12-02 18:05:25] 2025-12-02 17:04:50,036 | INFO     | intersect: -940354757690.9403
[2025-12-02 18:05:25] 2025-12-02 17:04:50,036 | INFO     | chi2: 2.935174050869523
[2025-12-02 18:05:25] 2025-12-02 17:04:50,036 | INFO     | current chi2=2.935174050869523 (change=0.8616956315300593 %)
[2025-12-02 18:05:25] 2025-12-02 17:04:50,036 | INFO     | right removable region: 207
[2025-12-02 18:05:25] 2025-12-02 17:04:50,036 | INFO     | sum of square deviations: 2996454322.0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,037 | INFO     | sum of deviations: 1371417576715.9998
[2025-12-02 18:05:25] 2025-12-02 17:04:50,037 | INFO     | mean x: 1764688577.0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,037 | INFO     | mean y: 6051415.093896714
[2025-12-02 18:05:25] 2025-12-02 17:04:50,037 | INFO     | intersect: -807656830064.2473
[2025-12-02 18:05:25] 2025-12-02 17:04:50,037 | INFO     | chi2: 2.2154142446439447
[2025-12-02 18:05:25] 2025-12-02 17:04:50,037 | INFO     | current chi2=2.2154142446439447 (change=54.323047451267556 %)
[2025-12-02 18:05:25] 2025-12-02 17:04:50,037 | INFO     | sum of square deviations: 2790348132.0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,038 | INFO     | sum of deviations: 1277939249390.5002
[2025-12-02 18:05:25] 2025-12-02 17:04:50,038 | INFO     | mean x: 1764688729.5
[2025-12-02 18:05:25] 2025-12-02 17:04:50,038 | INFO     | mean y: 6120580.072115385
[2025-12-02 18:05:25] 2025-12-02 17:04:50,038 | INFO     | intersect: -808195897126.1205
[2025-12-02 18:05:25] 2025-12-02 17:04:50,038 | INFO     | chi2: 2.211470660690071
[2025-12-02 18:05:25] 2025-12-02 17:04:50,038 | INFO     | current chi2=2.211470660690071 (change=0.17800661720072727 %)
[2025-12-02 18:05:25] 2025-12-02 17:04:50,038 | INFO     | left removable region: 20
[2025-12-02 18:05:25] 2025-12-02 17:04:50,038 | INFO     | sum of square deviations: 2027639878.0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,039 | INFO     | sum of deviations: 1056930364140.9998
[2025-12-02 18:05:25] 2025-12-02 17:04:50,039 | INFO     | mean x: 1764688699.0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,039 | INFO     | mean y: 6222915.754010695
[2025-12-02 18:05:25] 2025-12-02 17:04:50,039 | INFO     | intersect: -919857846373.1699
[2025-12-02 18:05:25] 2025-12-02 17:04:50,039 | INFO     | chi2: 0.12313659337187632
[2025-12-02 18:05:25] 2025-12-02 17:04:50,039 | INFO     | current memory leak: 521.26 B/s (using 187 data points, chi2=0.12)
[2025-12-02 18:05:25] 2025-12-02 17:04:50,039 | INFO     | could have reported an average CPU frequency of 2972 MHz (11 samples)
[2025-12-02 18:05:25] 2025-12-02 17:04:50,039 | INFO     | ..............................
[2025-12-02 18:05:25] 2025-12-02 17:04:50,039 | INFO     | . Timing measurements:
[2025-12-02 18:05:25] 2025-12-02 17:04:50,039 | INFO     | . get job = 0 s
[2025-12-02 18:05:25] 2025-12-02 17:04:50,039 | INFO     | . initial setup = 1 s
[2025-12-02 18:05:25] 2025-12-02 17:04:50,040 | INFO     | . payload setup = 14 s
[2025-12-02 18:05:25] 2025-12-02 17:04:50,040 | INFO     | . stage-in = 0 s
[2025-12-02 18:05:25] 2025-12-02 17:04:50,040 | INFO     | . payload execution = 13279 s
[2025-12-02 18:05:25] 2025-12-02 17:04:50,040 | INFO     | . stage-out = 1 s
[2025-12-02 18:05:25] 2025-12-02 17:04:50,040 | INFO     | . log creation = 0 s
[2025-12-02 18:05:25] 2025-12-02 17:04:50,040 | INFO     | ..............................
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | 
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | job summary report
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | --------------------------------------------------
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | PanDA job id: 6900371401
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | task id: 47530783
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | errors: (none)
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | pilot state: finished 
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | transexitcode: 0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | exeerrorcode: 0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | exeerrordiag: 
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | exitcode: 0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | exitmsg: OK
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | cpuconsumptiontime: 100170 s
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | nevents: 1000
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | neventsw: 0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | pid: 28421
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | pgrp: 28421
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | corecount: 8
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | event service: False
[2025-12-02 18:05:25] 2025-12-02 17:04:50,089 | INFO     | sizes: {0: 2284575, 2: 2284837, 11: 2284865, 13298: 2334589, 13299: 2343669, 13302: 2343859}
[2025-12-02 18:05:25] 2025-12-02 17:04:50,090 | INFO     | --------------------------------------------------
[2025-12-02 18:05:25] 2025-12-02 17:04:50,090 | INFO     | 
[2025-12-02 18:05:25] 2025-12-02 17:04:50,090 | INFO     | executing command: ls -lF /tmp/job_10943587/atlas/pilot/slots/0
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,098 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,099 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,099 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,099 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 18:05:25] 2025-12-02 17:04:50,099 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,099 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 18:05:25] 2025-12-02 17:04:50,099 | INFO     | job 6900371401 has completed (purged errors)
[2025-12-02 18:05:25] 2025-12-02 17:04:50,099 | INFO     | overall cleanup function is called
[2025-12-02 18:05:25] 2025-12-02 17:04:51,106 | INFO     | --- collectZombieJob: --- 10, [28421]
[2025-12-02 18:05:25] 2025-12-02 17:04:51,106 | INFO     | zombie collector waiting for pid 28421
[2025-12-02 18:05:25] 2025-12-02 17:04:51,106 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 18:05:25] 2025-12-02 17:04:51,106 | INFO     | collected zombie processes
[2025-12-02 18:05:25] 2025-12-02 17:04:51,106 | INFO     | will attempt to kill all subprocesses of pid=28421
[2025-12-02 18:05:25] 2025-12-02 17:04:51,228 | INFO     | process IDs to be killed: [28421] (in reverse order)
[2025-12-02 18:05:25] 2025-12-02 17:04:51,273 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 18:05:25] 2025-12-02 17:04:51,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 18:05:25] 2025-12-02 17:04:51,278 | INFO     | did not find any defunct processes belonging to 28421
[2025-12-02 18:05:25] 2025-12-02 17:04:51,282 | INFO     | did not find any defunct processes belonging to 28421
[2025-12-02 18:05:25] 2025-12-02 17:04:51,282 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 18:05:25] 2025-12-02 17:04:51,282 | INFO     | ready for new job
[2025-12-02 18:05:25] 2025-12-02 17:04:51,283 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 18:05:25] 2025-12-02 17:04:51,283 | INFO     | ***************************************
[2025-12-02 18:05:25] 2025-12-02 17:04:51,283 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 18:05:25] 2025-12-02 17:04:51,283 | INFO     | ***************************************
[2025-12-02 18:05:25] 2025-12-02 17:04:51,283 | INFO     | 
[2025-12-02 18:05:25] 2025-12-02 17:04:51,298 | INFO     | architecture information:
[2025-12-02 18:05:25] 2025-12-02 17:04:51,298 | INFO     | executing command: cat /etc/os-release
[2025-12-02 18:05:25] 2025-12-02 17:04:51,304 | INFO     | cat /etc/os-release:
[2025-12-02 18:05:25] NAME="CentOS Linux"
[2025-12-02 18:05:25] VERSION="7 (Core)"
[2025-12-02 18:05:25] ID="centos"
[2025-12-02 18:05:25] ID_LIKE="rhel fedora"
[2025-12-02 18:05:25] VERSION_ID="7"
[2025-12-02 18:05:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 18:05:25] ANSI_COLOR="0;31"
[2025-12-02 18:05:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 18:05:25] HOME_URL="https://www.centos.org/"
[2025-12-02 18:05:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 18:05:25] 
[2025-12-02 18:05:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 18:05:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 18:05:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 18:05:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 18:05:25] 
[2025-12-02 18:05:25] 2025-12-02 17:04:51,304 | INFO     | ***************************************
[2025-12-02 18:05:25] 2025-12-02 17:04:51,807 | INFO     | executing command: df -mP /tmp/job_10943587/atlas/pilot/slots/0
[2025-12-02 18:05:25] 2025-12-02 17:04:51,814 | INFO     | sufficient remaining disk space (218786430976 B)
[2025-12-02 18:05:25] 2025-12-02 17:04:51,814 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 18:05:25] 2025-12-02 17:04:51,814 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 18:05:25] 2025-12-02 17:04:51,814 | INFO     | update_server=False
[2025-12-02 18:05:25] 2025-12-02 17:04:51,814 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 18:05:25] 2025-12-02 17:04:51,814 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 18:05:25] 2025-12-02 17:04:52,194 | INFO     | all job control threads have been joined
[2025-12-02 18:05:25] 2025-12-02 17:04:52,195 | INFO     | all data control threads have been joined
[2025-12-02 18:05:25] 2025-12-02 17:04:52,530 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 18:05:25] 2025-12-02 17:04:52,530 | INFO     | aborting loop
[2025-12-02 18:05:25] 2025-12-02 17:04:52,535 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 18:05:25] 2025-12-02 17:04:52,669 | INFO     | all payload control threads have been joined
[2025-12-02 18:05:25] 2025-12-02 17:04:52,819 | INFO     | [job] retrieve thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:52,820 | INFO     | [job] queue monitor thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:52,919 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:53,199 | INFO     | [job] control thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:53,200 | INFO     | [data] control thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:53,255 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 18:05:25] 2025-12-02 17:04:53,368 | INFO     | [payload] validate_post thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:53,464 | INFO     | [payload] failed_post thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:53,535 | INFO     | [job] job monitor thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:53,674 | INFO     | [payload] control thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:53,842 | INFO     | [data] copytool_in thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:54,019 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:54,056 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:54,170 | INFO     | [job] validate thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:54,540 | INFO     | [data] copytool_out thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:04:57,260 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:05:02,486 | INFO     | job.realtimelogging is not enabled
[2025-12-02 18:05:25] 2025-12-02 17:05:03,492 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 18:05:25] 2025-12-02 17:05:17,803 | INFO     | [monitor] cgroup control has ended
[2025-12-02 18:05:25] 2025-12-02 17:05:19,887 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-02 18:05:25] 2025-12-02 17:05:21,874 | INFO     | PID=21096 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 18:05:25] 2025-12-02 17:05:21,874 | INFO     | .. there are 7 such processes running
[2025-12-02 18:05:25] 2025-12-02 17:05:21,874 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 18:05:25] 2025-12-02 17:05:21,874 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 18:05:25] 2025-12-02 17:05:21,874 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 18:05:25] 2025-12-02 17:05:21,874 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 18:05:25] 2025-12-02 17:05:21,874 | INFO     | [monitor] control thread has ended
[2025-12-02 18:05:25] 2025-12-02 17:05:24,912 | INFO     | all workflow threads have been joined
[2025-12-02 18:05:25] 2025-12-02 17:05:24,912 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 18:05:25] 2025-12-02 17:05:24,912 | INFO     | traces error code: 0
[2025-12-02 18:05:25] 2025-12-02 17:05:24,912 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 18:05:25] 2025-12-02 17:05:24,965 [wrapper] ==== pilot stdout END ====
[2025-12-02 18:05:25] 2025-12-02 17:05:24,966 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 18:05:25] 2025-12-02 17:05:24,967 [wrapper] pilotpid: 21096
[2025-12-02 18:05:25] 2025-12-02 17:05:24,969 [wrapper] Pilot exit status: 0
[2025-12-02 18:05:25] 2025-12-02 17:05:24,973 [wrapper] pandaids: 6900371401
[2025-12-02 18:05:25] 2025-12-02 17:05:24,997 [wrapper] cleanup supervisor_pilot  2278 21097
[2025-12-02 18:05:25] 2025-12-02 17:05:24,998 [wrapper] Test setup, not cleaning
[2025-12-02 18:05:25] 2025-12-02 17:05:25,000 [wrapper] apfmon messages muted
[2025-12-02 18:05:25] 2025-12-02 17:05:25,001 [wrapper] ==== wrapper stdout END ====
[2025-12-02 18:05:25] 2025-12-02 17:05:25,002 [wrapper] ==== wrapper stderr END ====
[2025-12-02 18:05:25]  *** Error codes and diagnostics ***
[2025-12-02 18:05:25]     "exeErrorCode": 0,
[2025-12-02 18:05:25]     "exeErrorDiag": "",
[2025-12-02 18:05:25]     "pilotErrorCode": 0,
[2025-12-02 18:05:25]     "pilotErrorDiag": "",
[2025-12-02 18:05:25]  *** Listing of results directory ***
[2025-12-02 18:05:25] total 1069968
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-02 18:05:25] -rwx------ 1 mf493845 unix-user     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user      5112 Nov 29 10:26 queuedata.json
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user       100 Dec  2 12:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 18:05:25] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 12:46 run_atlas
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user       105 Dec  2 12:46 job.xml
[2025-12-02 18:05:25] -rw-r--r-- 2 mf493845 unix-user 380272995 Dec  2 14:22 EVNT.47530775._000062.pool.root.1
[2025-12-02 18:05:25] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 14:22 start_atlas.sh
[2025-12-02 18:05:25] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 14:22 shared
[2025-12-02 18:05:25] -rw-r--r-- 2 mf493845 unix-user    590116 Dec  2 14:22 input.tar.gz
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user      6391 Dec  2 14:22 init_data.xml
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user         0 Dec  2 14:22 boinc_setup_complete
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user      8192 Dec  2 14:22 boinc_mmap_file
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user         0 Dec  2 14:22 boinc_lockfile
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user      2878 Dec  2 14:22 pandaJob.out
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user    986791 Dec  2 14:22 agis_schedconf.cvmfs.json
[2025-12-02 18:05:25] drwx------ 5 mf493845 unix-user       440 Dec  2 14:22 pilot3
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user 704339986 Dec  2 18:04 HITS.47530783._000619.pool.root.1
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user      1028 Dec  2 18:04 memory_monitor_summary.json
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user   1516240 Dec  2 18:04 agis_ddmendpoints.agis.ALL.json
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user   1615251 Dec  2 18:04 log.47530783._000619.job.log.tgz.1
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user     27504 Dec  2 18:04 heartbeat.json
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user        95 Dec  2 18:05 pilot_heartbeat.json
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user      4907 Dec  2 18:05 pilotlog.txt
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user   1939048 Dec  2 18:05 log.47530783._000619.job.log.1
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user       353 Dec  2 18:05 output.list
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user       620 Dec  2 18:05 runtime_log
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user   3594240 Dec  2 18:05 result.tar.gz
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user      9221 Dec  2 18:05 runtime_log.err
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user       651 Dec  2 18:05 BSPNDmwKWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm98OKDmWxNNDm.diag
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user     21635 Dec  2 18:05 stderr.txt
[2025-12-02 18:05:25] HITS file was successfully produced:
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user 704339986 Dec  2 18:04 shared/HITS.pool.root.1
[2025-12-02 18:05:25]  *** Contents of shared directory: ***
[2025-12-02 18:05:25] total 1063308
[2025-12-02 18:05:25] -rw-r--r-- 2 mf493845 unix-user 380272995 Dec  2 14:22 ATLAS.root_0
[2025-12-02 18:05:25] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 14:22 start_atlas.sh
[2025-12-02 18:05:25] -rw-r--r-- 2 mf493845 unix-user    590116 Dec  2 14:22 input.tar.gz
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user 704339986 Dec  2 18:04 HITS.pool.root.1
[2025-12-02 18:05:25] -rw------- 1 mf493845 unix-user   3594240 Dec  2 18:05 result.tar.gz
18:05:26 (17318): run_atlas exited; CPU time 100337.955020
18:05:26 (17318): called boinc_finish(0)

</stderr_txt>
]]>

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