Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
14:09:41 (21710): wrapper (7.7.26015): starting
14:09:41 (21710): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 14:09:41] Arguments: --nthreads 8
[2025-12-02 14:09:41] Threads: 8
[2025-12-02 14:09:41] Checking for CVMFS
[2025-12-02 14:09:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 14:09:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 14:09:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 14:09:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 14:09:42] 2.11.0.0 7771 74345 115216 153550 0 194 3582196 4096000 2896 130560 3 7339456 99.489 6789605 626 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 14:09:42] CVMFS is ok
[2025-12-02 14:09:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 14:09:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 14:09:42] Further information can be found at the LHC@home message board.
[2025-12-02 14:09:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 14:09:42] Checking for apptainer binary...
[2025-12-02 14:09:42] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 14:09:42] apptainer is not installed, using version from CVMFS
[2025-12-02 14:09:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 14:09:43] WARNING: Environment variable TMPDIR already has value [/tmp/job_10943548/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node120
[2025-12-02 14:09:43] apptainer works
[2025-12-02 14:09:43] Set ATHENA_PROC_NUMBER=8
[2025-12-02 14:09:43] Set ATHENA_CORE_NUMBER=8
[2025-12-02 14:09:43] Starting ATLAS job with PandaID=6900798738
[2025-12-02 14:09:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10943548/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 17:59:23]  *** The last 200 lines of the pilot log: ***
[2025-12-02 17:59:23] 2025-12-02 16:58:23,050 | INFO     | output file size check: skipping output file /tmp/job_10943548/atlas/pilot/slots/0/PanDA_Pilot-6900798738/HITS.47530783._000696.pool.root.1 since it does not exist
[2025-12-02 17:59:23] 2025-12-02 16:58:23,055 | INFO     | using path: /tmp/job_10943548/atlas/pilot/slots/0/PanDA_Pilot-6900798738/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 17:59:23] 2025-12-02 16:58:23,055 | INFO     | extracted standard info from prmon json
[2025-12-02 17:59:23] 2025-12-02 16:58:23,055 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 17:59:23] 2025-12-02 16:58:23,055 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 17:59:23] 2025-12-02 16:58:23,058 | INFO     | fitting pss+swap vs Time
[2025-12-02 17:59:23] 2025-12-02 16:58:23,058 | INFO     | sum of square deviations: 3531973200.0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,059 | INFO     | sum of deviations: 504473845379.00006
[2025-12-02 17:59:23] 2025-12-02 16:58:23,059 | INFO     | mean x: 1764687845.0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,059 | INFO     | mean y: 3827141.262222222
[2025-12-02 17:59:23] 2025-12-02 16:58:23,059 | INFO     | intersect: -252047593594.52676
[2025-12-02 17:59:23] 2025-12-02 16:58:23,059 | INFO     | chi2: 5.349670450508974
[2025-12-02 17:59:23] 2025-12-02 16:58:23,059 | INFO     | sum of square deviations: 3301699115.0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,060 | INFO     | sum of deviations: 539593749766.4999
[2025-12-02 17:59:23] 2025-12-02 16:58:23,060 | INFO     | mean x: 1764687692.5
[2025-12-02 17:59:23] 2025-12-02 16:58:23,060 | INFO     | mean y: 3849891.7409090907
[2025-12-02 17:59:23] 2025-12-02 16:58:23,060 | INFO     | intersect: -288397490144.62006
[2025-12-02 17:59:23] 2025-12-02 16:58:23,060 | INFO     | chi2: 3.7831451193672145
[2025-12-02 17:59:23] 2025-12-02 16:58:23,060 | INFO     | current chi2=3.7831451193672145 (change=29.282651064846775 %)
[2025-12-02 17:59:23] 2025-12-02 16:58:23,060 | INFO     | sum of square deviations: 3081657780.0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,061 | INFO     | sum of deviations: 504226555343.99994
[2025-12-02 17:59:23] 2025-12-02 16:58:23,061 | INFO     | mean x: 1764687540.0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,061 | INFO     | mean y: 3825395.869767442
[2025-12-02 17:59:23] 2025-12-02 16:58:23,061 | INFO     | intersect: -288737619331.54486
[2025-12-02 17:59:23] 2025-12-02 16:58:23,061 | INFO     | chi2: 3.7840733520860352
[2025-12-02 17:59:23] 2025-12-02 16:58:23,061 | INFO     | current chi2=3.7840733520860352 (change=-0.024536006141259493 %)
[2025-12-02 17:59:23] 2025-12-02 16:58:23,061 | INFO     | right removable region: 214
[2025-12-02 17:59:23] 2025-12-02 16:58:23,062 | INFO     | sum of square deviations: 3301699115.0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,062 | INFO     | sum of deviations: 394348646601.5
[2025-12-02 17:59:23] 2025-12-02 16:58:23,062 | INFO     | mean x: 1764687997.5
[2025-12-02 17:59:23] 2025-12-02 16:58:23,062 | INFO     | mean y: 3899927.359090909
[2025-12-02 17:59:23] 2025-12-02 16:58:23,062 | INFO     | intersect: -210767069579.36298
[2025-12-02 17:59:23] 2025-12-02 16:58:23,063 | INFO     | chi2: 1.9320774579629907
[2025-12-02 17:59:23] 2025-12-02 16:58:23,063 | INFO     | current chi2=1.9320774579629907 (change=63.88417799120373 %)
[2025-12-02 17:59:23] 2025-12-02 16:58:23,063 | INFO     | sum of square deviations: 3081657780.0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,063 | INFO     | sum of deviations: 365772119494.0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,063 | INFO     | mean x: 1764688150.0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,063 | INFO     | mean y: 3919702.604651163
[2025-12-02 17:59:23] 2025-12-02 16:58:23,064 | INFO     | intersect: -209452733486.00665
[2025-12-02 17:59:23] 2025-12-02 16:58:23,064 | INFO     | chi2: 1.9258929372498814
[2025-12-02 17:59:23] 2025-12-02 16:58:23,064 | INFO     | current chi2=1.9258929372498814 (change=0.32009693439670217 %)
[2025-12-02 17:59:23] 2025-12-02 16:58:23,064 | INFO     | left removable region: 20
[2025-12-02 17:59:23] 2025-12-02 16:58:23,064 | INFO     | sum of square deviations: 2263977332.5
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | sum of deviations: 324163829296.0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | mean x: 1764688119.5
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | mean y: 3952912.12371134
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | intersect: -252669980752.48254
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | chi2: 0.22618234181718638
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | current memory leak: 143.18 B/s (using 194 data points, chi2=0.23)
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | could have reported an average CPU frequency of 2858 MHz (11 samples)
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | ..............................
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | . Timing measurements:
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | . get job = 0 s
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | . initial setup = 1 s
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | . payload setup = 4 s
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | . stage-in = 0 s
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | . payload execution = 13683 s
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | . stage-out = 1 s
[2025-12-02 17:59:23] 2025-12-02 16:58:23,065 | INFO     | . log creation = 0 s
[2025-12-02 17:59:23] 2025-12-02 16:58:23,066 | INFO     | ..............................
[2025-12-02 17:59:23] 2025-12-02 16:58:23,221 | INFO     | number of running child processes to parent process 9793: 1
[2025-12-02 17:59:23] 2025-12-02 16:58:23,221 | INFO     | maximum number of monitored processes: 16
[2025-12-02 17:59:23] 2025-12-02 16:58:23,221 | INFO     | aborting job monitoring since job object (job id=6900798738) has expired
[2025-12-02 17:59:23] 2025-12-02 16:58:23,280 | INFO     | 
[2025-12-02 17:59:23] 2025-12-02 16:58:23,280 | INFO     | job summary report
[2025-12-02 17:59:23] 2025-12-02 16:58:23,280 | INFO     | --------------------------------------------------
[2025-12-02 17:59:23] 2025-12-02 16:58:23,280 | INFO     | PanDA job id: 6900798738
[2025-12-02 17:59:23] 2025-12-02 16:58:23,280 | INFO     | task id: 47530783
[2025-12-02 17:59:23] 2025-12-02 16:58:23,280 | INFO     | errors: (none)
[2025-12-02 17:59:23] 2025-12-02 16:58:23,280 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 17:59:23] 2025-12-02 16:58:23,280 | INFO     | pilot state: finished 
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | transexitcode: 0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | exeerrorcode: 0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | exeerrordiag: 
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | exitcode: 0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | exitmsg: OK
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | cpuconsumptiontime: 102876 s
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | nevents: 1000
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | neventsw: 0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | pid: 9793
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | pgrp: 9793
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | corecount: 8
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | event service: False
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | sizes: {0: 2284575, 2: 2284837, 11: 2284865, 13691: 2335502, 13692: 2344526, 13693: 2344582, 13696: 2344984}
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | --------------------------------------------------
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | 
[2025-12-02 17:59:23] 2025-12-02 16:58:23,281 | INFO     | executing command: ls -lF /tmp/job_10943548/atlas/pilot/slots/0
[2025-12-02 17:59:23] 2025-12-02 16:58:23,289 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,289 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,289 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,289 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,289 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,289 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | job 6900798738 has completed (purged errors)
[2025-12-02 17:59:23] 2025-12-02 16:58:23,290 | INFO     | overall cleanup function is called
[2025-12-02 17:59:23] 2025-12-02 16:58:24,298 | INFO     | --- collectZombieJob: --- 10, [9793]
[2025-12-02 17:59:23] 2025-12-02 16:58:24,298 | INFO     | zombie collector waiting for pid 9793
[2025-12-02 17:59:23] 2025-12-02 16:58:24,298 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 17:59:23] 2025-12-02 16:58:24,298 | INFO     | collected zombie processes
[2025-12-02 17:59:23] 2025-12-02 16:58:24,298 | INFO     | will attempt to kill all subprocesses of pid=9793
[2025-12-02 17:59:23] 2025-12-02 16:58:24,413 | INFO     | process IDs to be killed: [9793] (in reverse order)
[2025-12-02 17:59:23] 2025-12-02 16:58:24,456 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 17:59:23] 2025-12-02 16:58:24,456 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 17:59:23] 2025-12-02 16:58:24,460 | INFO     | did not find any defunct processes belonging to 9793
[2025-12-02 17:59:23] 2025-12-02 16:58:24,463 | INFO     | did not find any defunct processes belonging to 9793
[2025-12-02 17:59:23] 2025-12-02 16:58:24,464 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 17:59:23] 2025-12-02 16:58:24,464 | INFO     | ready for new job
[2025-12-02 17:59:23] 2025-12-02 16:58:24,464 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 17:59:23] 2025-12-02 16:58:24,465 | INFO     | ***************************************
[2025-12-02 17:59:23] 2025-12-02 16:58:24,465 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 17:59:23] 2025-12-02 16:58:24,465 | INFO     | ***************************************
[2025-12-02 17:59:23] 2025-12-02 16:58:24,465 | INFO     | 
[2025-12-02 17:59:23] 2025-12-02 16:58:24,479 | INFO     | architecture information:
[2025-12-02 17:59:23] 2025-12-02 16:58:24,479 | INFO     | executing command: cat /etc/os-release
[2025-12-02 17:59:23] 2025-12-02 16:58:24,485 | INFO     | cat /etc/os-release:
[2025-12-02 17:59:23] NAME="CentOS Linux"
[2025-12-02 17:59:23] VERSION="7 (Core)"
[2025-12-02 17:59:23] ID="centos"
[2025-12-02 17:59:23] ID_LIKE="rhel fedora"
[2025-12-02 17:59:23] VERSION_ID="7"
[2025-12-02 17:59:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 17:59:23] ANSI_COLOR="0;31"
[2025-12-02 17:59:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 17:59:23] HOME_URL="https://www.centos.org/"
[2025-12-02 17:59:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 17:59:23] 
[2025-12-02 17:59:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 17:59:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 17:59:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 17:59:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 17:59:23] 
[2025-12-02 17:59:23] 2025-12-02 16:58:24,485 | INFO     | ***************************************
[2025-12-02 17:59:23] 2025-12-02 16:58:24,988 | INFO     | executing command: df -mP /tmp/job_10943548/atlas/pilot/slots/0
[2025-12-02 17:59:23] 2025-12-02 16:58:24,994 | INFO     | sufficient remaining disk space (222362075136 B)
[2025-12-02 17:59:23] 2025-12-02 16:58:24,994 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 17:59:23] 2025-12-02 16:58:24,994 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 17:59:23] 2025-12-02 16:58:24,994 | INFO     | update_server=False
[2025-12-02 17:59:23] 2025-12-02 16:58:24,994 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 17:59:23] 2025-12-02 16:58:24,995 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 17:59:23] 2025-12-02 16:58:24,995 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 17:59:23] 2025-12-02 16:58:24,995 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 17:59:23] 2025-12-02 16:58:24,995 | INFO     | aborting loop
[2025-12-02 17:59:23] 2025-12-02 16:58:25,347 | INFO     | all job control threads have been joined
[2025-12-02 17:59:23] 2025-12-02 16:58:26,000 | INFO     | [job] retrieve thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:26,000 | INFO     | [job] queue monitor thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:26,000 | INFO     | [job] job monitor thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:26,018 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 17:59:23] 2025-12-02 16:58:26,018 | INFO     | all data control threads have been joined
[2025-12-02 17:59:23] 2025-12-02 16:58:26,163 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:26,189 | INFO     | all payload control threads have been joined
[2025-12-02 17:59:23] 2025-12-02 16:58:26,236 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:26,327 | INFO     | [data] copytool_in thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:26,352 | INFO     | [job] control thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:26,525 | INFO     | [job] validate thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:26,537 | INFO     | [payload] failed_post thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:27,000 | INFO     | [data] copytool_out thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:27,024 | INFO     | [data] control thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:27,194 | INFO     | [payload] control thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:27,252 | INFO     | [payload] validate_post thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:27,263 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:30,024 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:35,288 | INFO     | job.realtimelogging is not enabled
[2025-12-02 17:59:23] 2025-12-02 16:58:36,294 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 17:59:23] 2025-12-02 16:58:55,443 | INFO     | PID=26211 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 17:59:23] 2025-12-02 16:58:55,443 | INFO     | .. there are 5 such processes running
[2025-12-02 17:59:23] 2025-12-02 16:58:55,443 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 17:59:23] 2025-12-02 16:58:55,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 17:59:23] 2025-12-02 16:58:55,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 17:59:23] 2025-12-02 16:59:16,226 | INFO     | [monitor] cgroup control has ended
[2025-12-02 17:59:23] 2025-12-02 16:59:18,093 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-02 17:59:23] 2025-12-02 16:59:18,557 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 17:59:23] 2025-12-02 16:59:18,558 | INFO     | [monitor] control thread has ended
[2025-12-02 17:59:23] 2025-12-02 16:59:23,118 | INFO     | all workflow threads have been joined
[2025-12-02 17:59:23] 2025-12-02 16:59:23,118 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 17:59:23] 2025-12-02 16:59:23,118 | INFO     | traces error code: 0
[2025-12-02 17:59:23] 2025-12-02 16:59:23,118 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 17:59:23] 2025-12-02 16:59:23,170 [wrapper] ==== pilot stdout END ====
[2025-12-02 17:59:23] 2025-12-02 16:59:23,171 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 17:59:23] 2025-12-02 16:59:23,172 [wrapper] pilotpid: 26211
[2025-12-02 17:59:23] 2025-12-02 16:59:23,173 [wrapper] Pilot exit status: 0
[2025-12-02 17:59:23] 2025-12-02 16:59:23,176 [wrapper] pandaids: 6900798738
[2025-12-02 17:59:23] 2025-12-02 16:59:23,201 [wrapper] cleanup supervisor_pilot  8266 26212
[2025-12-02 17:59:23] 2025-12-02 16:59:23,202 [wrapper] Test setup, not cleaning
[2025-12-02 17:59:23] 2025-12-02 16:59:23,203 [wrapper] apfmon messages muted
[2025-12-02 17:59:23] 2025-12-02 16:59:23,204 [wrapper] ==== wrapper stdout END ====
[2025-12-02 17:59:23] 2025-12-02 16:59:23,204 [wrapper] ==== wrapper stderr END ====
[2025-12-02 17:59:23]  *** Error codes and diagnostics ***
[2025-12-02 17:59:23]     "exeErrorCode": 0,
[2025-12-02 17:59:23]     "exeErrorDiag": "",
[2025-12-02 17:59:23]     "pilotErrorCode": 0,
[2025-12-02 17:59:23]     "pilotErrorDiag": "",
[2025-12-02 17:59:23]  *** Listing of results directory ***
[2025-12-02 17:59:23] total 1070580
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-02 17:59:23] -rwx------ 1 mf493845 unix-user     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user      5112 Nov 29 10:26 queuedata.json
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user       100 Dec  2 12:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 17:59:23] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 12:33 run_atlas
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user       105 Dec  2 12:33 job.xml
[2025-12-02 17:59:23] -rw-r--r-- 2 mf493845 unix-user 376376898 Dec  2 14:09 EVNT.47530775._000070.pool.root.1
[2025-12-02 17:59:23] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 14:09 start_atlas.sh
[2025-12-02 17:59:23] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 14:09 shared
[2025-12-02 17:59:23] -rw-r--r-- 2 mf493845 unix-user    590125 Dec  2 14:09 input.tar.gz
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user      6392 Dec  2 14:09 init_data.xml
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user         0 Dec  2 14:09 boinc_setup_complete
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user      8192 Dec  2 14:09 boinc_mmap_file
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user         0 Dec  2 14:09 boinc_lockfile
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user      2878 Dec  2 14:09 pandaJob.out
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user    986791 Dec  2 14:09 agis_schedconf.cvmfs.json
[2025-12-02 17:59:23] drwx------ 5 mf493845 unix-user       440 Dec  2 14:09 pilot3
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user 708746206 Dec  2 17:58 HITS.47530783._000696.pool.root.1
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user        95 Dec  2 17:58 pilot_heartbeat.json
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user      1033 Dec  2 17:58 memory_monitor_summary.json
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user   1516240 Dec  2 17:58 agis_ddmendpoints.agis.ALL.json
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user   1631787 Dec  2 17:58 log.47530783._000696.job.log.tgz.1
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user     28300 Dec  2 17:58 heartbeat.json
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user      4907 Dec  2 17:59 pilotlog.txt
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user   1985843 Dec  2 17:59 log.47530783._000696.job.log.1
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user       353 Dec  2 17:59 output.list
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user       620 Dec  2 17:59 runtime_log
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user   3655680 Dec  2 17:59 result.tar.gz
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user       649 Dec  2 17:59 v6zLDm3KWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOqLKDmwOUbNo.diag
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user      9221 Dec  2 17:59 runtime_log.err
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user     21771 Dec  2 17:59 stderr.txt
[2025-12-02 17:59:23] HITS file was successfully produced:
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user 708746206 Dec  2 17:58 shared/HITS.pool.root.1
[2025-12-02 17:59:23]  *** Contents of shared directory: ***
[2025-12-02 17:59:23] total 1063860
[2025-12-02 17:59:23] -rw-r--r-- 2 mf493845 unix-user 376376898 Dec  2 14:09 ATLAS.root_0
[2025-12-02 17:59:23] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 14:09 start_atlas.sh
[2025-12-02 17:59:23] -rw-r--r-- 2 mf493845 unix-user    590125 Dec  2 14:09 input.tar.gz
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user 708746206 Dec  2 17:58 HITS.pool.root.1
[2025-12-02 17:59:23] -rw------- 1 mf493845 unix-user   3655680 Dec  2 17:59 result.tar.gz
17:59:25 (21710): run_atlas exited; CPU time 103011.386196
17:59:25 (21710): called boinc_finish(0)

</stderr_txt>
]]>

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