Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:31:01 (7829): wrapper (7.7.26015): starting
13:31:01 (7829): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 13:31:01] Arguments: --nthreads 8
[2025-12-02 13:31:01] Threads: 8
[2025-12-02 13:31:01] Checking for CVMFS
[2025-12-02 13:31:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 13:31:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 13:31:02] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 13:31:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 13:31:02] 2.11.0.0 26815 11756 68124 153550 3 188 3258104 4096001 1834 130560 1 856072 98.560 1455160 786 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 13:31:02] CVMFS is ok
[2025-12-02 13:31:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 13:31:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 13:31:02] Further information can be found at the LHC@home message board.
[2025-12-02 13:31:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 13:31:02] Checking for apptainer binary...
[2025-12-02 13:31:02] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 13:31:02] apptainer is not installed, using version from CVMFS
[2025-12-02 13:31:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 13:31:02] WARNING: Environment variable TMPDIR already has value [/tmp/job_10943516/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node143
[2025-12-02 13:31:02] apptainer works
[2025-12-02 13:31:02] Set ATHENA_PROC_NUMBER=8
[2025-12-02 13:31:02] Set ATHENA_CORE_NUMBER=8
[2025-12-02 13:31:02] Starting ATLAS job with PandaID=6904565240
[2025-12-02 13:31:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10943516/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 14:52:30]  *** The last 200 lines of the pilot log: ***
[2025-12-02 14:52:30]  scope=mc23_13p6TeV
[2025-12-02 14:52:30]  status=None
[2025-12-02 14:52:30]  status_code=0
[2025-12-02 14:52:30]  storage_token=
[2025-12-02 14:52:30]  surl=/tmp/job_10943516/atlas/pilot/slots/0/PanDA_Pilot-6904565240/log.47523845._000128.job.log.tgz.1
[2025-12-02 14:52:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/a7/log.47523845._000128.job.log.tgz.1
[2025-12-02 14:52:30]  workdir=None
[2025-12-02 14:52:30] ]
[2025-12-02 14:52:30] 2025-12-02 13:52:07,197 | INFO     | transferring file log.47523845._000128.job.log.tgz.1 from /tmp/job_10943516/atlas/pilot/slots/0/PanDA_Pilot-6904565240/log.47523845._000128.job.log.tgz.1 to /tmp/j
[2025-12-02 14:52:30] 2025-12-02 13:52:07,197 | INFO     | executing command: /usr/bin/env mv /tmp/job_10943516/atlas/pilot/slots/0/PanDA_Pilot-6904565240/log.47523845._000128.job.log.tgz.1 /tmp/job_10943516/atlas/pilot/sl
[2025-12-02 14:52:30] 2025-12-02 13:52:07,204 | INFO     | adding to output.list: log.47523845._000128.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/a7/log.47523845._000128.job.log.tg
[2025-12-02 14:52:30] 2025-12-02 13:52:07,205 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-02 14:52:30] 2025-12-02 13:52:07,205 | INFO     | summary of transferred files:
[2025-12-02 14:52:30] 2025-12-02 13:52:07,205 | INFO     |  -- lfn=log.47523845._000128.job.log.tgz.1, status_code=0, status=transferred
[2025-12-02 14:52:30] 2025-12-02 13:52:07,205 | INFO     | stage-out finished correctly
[2025-12-02 14:52:30] 2025-12-02 13:52:07,205 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 14:52:30] 2025-12-02 13:52:07,334 | INFO     | time since job start (4860s) is within the limit (172800.0s)
[2025-12-02 14:52:30] 2025-12-02 13:52:07,887 | WARNING  | process 20925 can no longer be monitored (due to stat problems) - aborting
[2025-12-02 14:52:30] 2025-12-02 13:52:07,887 | INFO     | using path: /tmp/job_10943516/atlas/pilot/slots/0/PanDA_Pilot-6904565240/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 14:52:30] 2025-12-02 13:52:07,967 | INFO     | number of running child processes to parent process 20925: 1
[2025-12-02 14:52:30] 2025-12-02 13:52:07,967 | INFO     | maximum number of monitored processes: 6
[2025-12-02 14:52:30] 2025-12-02 13:52:09,194 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-02 14:52:30] 2025-12-02 13:52:09,339 | INFO     | time since job start (4862s) is within the limit (172800.0s)
[2025-12-02 14:52:30] 2025-12-02 13:52:09,718 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 14:52:30] 2025-12-02 13:52:09,719 | INFO     | job 6904565240 has state=finished
[2025-12-02 14:52:30] 2025-12-02 13:52:09,719 | INFO     | preparing for final server update for job 6904565240 in state='finished'
[2025-12-02 14:52:30] 2025-12-02 13:52:09,719 | INFO     | this job has now completed (state=finished)
[2025-12-02 14:52:30] 2025-12-02 13:52:09,719 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-02 14:52:30] 2025-12-02 13:52:09,719 | INFO     | log transfer has been attempted: DONE
[2025-12-02 14:52:30] 2025-12-02 13:52:09,719 | INFO     | job 6904565240 has finished - writing final server update
[2025-12-02 14:52:30] 2025-12-02 13:52:09,719 | INFO     | total number of processed events: 400 (read)
[2025-12-02 14:52:30] 2025-12-02 13:52:09,719 | INFO     | executing command: lscpu
[2025-12-02 14:52:30] 2025-12-02 13:52:09,750 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-02 14:52:30] 2025-12-02 13:52:10,469 | INFO     | monitor loop #362: job 0:6904565240 is in state 'finished'
[2025-12-02 14:52:30] 2025-12-02 13:52:10,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:52:30] 2025-12-02 13:52:11,345 | INFO     | time since job start (4864s) is within the limit (172800.0s)
[2025-12-02 14:52:30] 2025-12-02 13:52:11,345 | INFO     | 4864s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-02 14:52:30] 2025-12-02 13:52:11,366 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 14:52:30] 2025-12-02 13:52:11,382 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2379.9262656250003
[2025-12-02 14:52:30] 2025-12-02 13:52:11,387 | INFO     | using path: /tmp/job_10943516/atlas/pilot/slots/0/PanDA_Pilot-6904565240/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 14:52:30] 2025-12-02 13:52:11,388 | INFO     | extracted standard info from prmon json
[2025-12-02 14:52:30] 2025-12-02 13:52:11,388 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 14:52:30] 2025-12-02 13:52:11,388 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 14:52:30] 2025-12-02 13:52:11,388 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-02 14:52:30] 2025-12-02 13:52:11,388 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-02 14:52:30] 2025-12-02 13:52:11,389 | INFO     | fitting pss+swap vs Time
[2025-12-02 14:52:30] 2025-12-02 13:52:11,389 | INFO     | sum of square deviations: 120605052.0
[2025-12-02 14:52:30] 2025-12-02 13:52:11,389 | INFO     | sum of deviations: 14620031040.0
[2025-12-02 14:52:30] 2025-12-02 13:52:11,389 | INFO     | mean x: 1764681186.0
[2025-12-02 14:52:30] 2025-12-02 13:52:11,389 | INFO     | mean y: 2916156.9178082193
[2025-12-02 14:52:30] 2025-12-02 13:52:11,389 | INFO     | intersect: -213915931247.78305
[2025-12-02 14:52:30] 2025-12-02 13:52:11,389 | INFO     | chi2: 0.05868927934808972
[2025-12-02 14:52:30] 2025-12-02 13:52:11,389 | INFO     | current memory leak: 121.22 B/s (using 73 data points, chi2=0.06)
[2025-12-02 14:52:30] 2025-12-02 13:52:11,389 | INFO     | could have reported an average CPU frequency of 2573 MHz (6 samples)
[2025-12-02 14:52:30] 2025-12-02 13:52:11,390 | INFO     | ..............................
[2025-12-02 14:52:30] 2025-12-02 13:52:11,390 | INFO     | . Timing measurements:
[2025-12-02 14:52:30] 2025-12-02 13:52:11,390 | INFO     | . get job = 0 s
[2025-12-02 14:52:30] 2025-12-02 13:52:11,390 | INFO     | . initial setup = 1 s
[2025-12-02 14:52:30] 2025-12-02 13:52:11,390 | INFO     | . payload setup = 2 s
[2025-12-02 14:52:30] 2025-12-02 13:52:11,390 | INFO     | . stage-in = 0 s
[2025-12-02 14:52:30] 2025-12-02 13:52:11,390 | INFO     | . payload execution = 4839 s
[2025-12-02 14:52:30] 2025-12-02 13:52:11,390 | INFO     | . stage-out = 0 s
[2025-12-02 14:52:30] 2025-12-02 13:52:11,390 | INFO     | . log creation = 0 s
[2025-12-02 14:52:30] 2025-12-02 13:52:11,390 | INFO     | ..............................
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | 
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | job summary report
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | --------------------------------------------------
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | PanDA job id: 6904565240
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | task id: 47523845
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | errors: (none)
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | pilot state: finished 
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | transexitcode: 0
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | exeerrorcode: 0
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | exeerrordiag: 
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | exitcode: 0
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | exitmsg: OK
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | cpuconsumptiontime: 35770 s
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | nevents: 400
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | neventsw: 0
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | pid: 20925
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | pgrp: 20925
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | corecount: 8
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | event service: False
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | sizes: {0: 2284019, 2: 2284281, 10: 2284309, 4846: 2310750, 4847: 2319778, 4849: 2319834, 4851: 2320156}
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | --------------------------------------------------
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | 
[2025-12-02 14:52:30] 2025-12-02 13:52:11,439 | INFO     | executing command: ls -lF /tmp/job_10943516/atlas/pilot/slots/0
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,448 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,449 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 14:52:30] 2025-12-02 13:52:11,449 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,449 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 14:52:30] 2025-12-02 13:52:11,449 | INFO     | job 6904565240 has completed (purged errors)
[2025-12-02 14:52:30] 2025-12-02 13:52:11,449 | INFO     | overall cleanup function is called
[2025-12-02 14:52:30] 2025-12-02 13:52:12,455 | INFO     | --- collectZombieJob: --- 10, [20925]
[2025-12-02 14:52:30] 2025-12-02 13:52:12,455 | INFO     | zombie collector waiting for pid 20925
[2025-12-02 14:52:30] 2025-12-02 13:52:12,455 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 14:52:30] 2025-12-02 13:52:12,455 | INFO     | collected zombie processes
[2025-12-02 14:52:30] 2025-12-02 13:52:12,455 | INFO     | will attempt to kill all subprocesses of pid=20925
[2025-12-02 14:52:30] 2025-12-02 13:52:12,539 | INFO     | process IDs to be killed: [20925] (in reverse order)
[2025-12-02 14:52:30] 2025-12-02 13:52:12,568 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 14:52:30] 2025-12-02 13:52:12,568 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 14:52:30] 2025-12-02 13:52:12,571 | INFO     | did not find any defunct processes belonging to 20925
[2025-12-02 14:52:30] 2025-12-02 13:52:12,573 | INFO     | did not find any defunct processes belonging to 20925
[2025-12-02 14:52:30] 2025-12-02 13:52:12,574 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 14:52:30] 2025-12-02 13:52:12,574 | INFO     | ready for new job
[2025-12-02 14:52:30] 2025-12-02 13:52:12,574 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 14:52:30] 2025-12-02 13:52:12,575 | INFO     | ***************************************
[2025-12-02 14:52:30] 2025-12-02 13:52:12,575 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 14:52:30] 2025-12-02 13:52:12,575 | INFO     | ***************************************
[2025-12-02 14:52:30] 2025-12-02 13:52:12,575 | INFO     | 
[2025-12-02 14:52:30] 2025-12-02 13:52:12,589 | INFO     | architecture information:
[2025-12-02 14:52:30] 2025-12-02 13:52:12,589 | INFO     | executing command: cat /etc/os-release
[2025-12-02 14:52:30] 2025-12-02 13:52:12,594 | INFO     | cat /etc/os-release:
[2025-12-02 14:52:30] NAME="CentOS Linux"
[2025-12-02 14:52:30] VERSION="7 (Core)"
[2025-12-02 14:52:30] ID="centos"
[2025-12-02 14:52:30] ID_LIKE="rhel fedora"
[2025-12-02 14:52:30] VERSION_ID="7"
[2025-12-02 14:52:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 14:52:30] ANSI_COLOR="0;31"
[2025-12-02 14:52:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 14:52:30] HOME_URL="https://www.centos.org/"
[2025-12-02 14:52:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 14:52:30] 
[2025-12-02 14:52:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 14:52:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 14:52:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 14:52:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 14:52:30] 
[2025-12-02 14:52:30] 2025-12-02 13:52:12,595 | INFO     | ***************************************
[2025-12-02 14:52:30] 2025-12-02 13:52:13,097 | INFO     | executing command: df -mP /tmp/job_10943516/atlas/pilot/slots/0
[2025-12-02 14:52:30] 2025-12-02 13:52:13,103 | INFO     | sufficient remaining disk space (227542040576 B)
[2025-12-02 14:52:30] 2025-12-02 13:52:13,103 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 14:52:30] 2025-12-02 13:52:13,103 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 14:52:30] 2025-12-02 13:52:13,103 | INFO     | update_server=False
[2025-12-02 14:52:30] 2025-12-02 13:52:13,103 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 14:52:30] 2025-12-02 13:52:13,103 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-02 14:52:30] 2025-12-02 13:52:13,103 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 14:52:30] 2025-12-02 13:52:13,103 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 14:52:30] 2025-12-02 13:52:13,103 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 14:52:30] 2025-12-02 13:52:13,104 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 14:52:30] 2025-12-02 13:52:13,104 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 14:52:30] 2025-12-02 13:52:13,302 | INFO     | all payload control threads have been joined
[2025-12-02 14:52:30] 2025-12-02 13:52:13,977 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 14:52:30] 2025-12-02 13:52:13,977 | INFO     | aborting loop
[2025-12-02 14:52:30] 2025-12-02 13:52:14,108 | INFO     | [job] retrieve thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:14,109 | INFO     | [job] queue monitor thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:14,162 | INFO     | [data] copytool_in thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:14,203 | INFO     | all data control threads have been joined
[2025-12-02 14:52:30] 2025-12-02 13:52:14,307 | INFO     | [payload] control thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:14,336 | INFO     | all job control threads have been joined
[2025-12-02 14:52:30] 2025-12-02 13:52:14,404 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:14,773 | INFO     | [payload] failed_post thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:14,982 | INFO     | [job] job monitor thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:15,087 | INFO     | [payload] validate_post thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:15,109 | INFO     | [data] copytool_out thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:15,208 | INFO     | [data] control thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:15,244 | INFO     | [job] validate thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:15,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 14:52:30] 2025-12-02 13:52:15,341 | INFO     | [job] control thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:15,425 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:15,480 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:15,499 | INFO     | [monitor] cgroup control has ended
[2025-12-02 14:52:30] 2025-12-02 13:52:19,251 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:23,496 | INFO     | job.realtimelogging is not enabled
[2025-12-02 14:52:30] 2025-12-02 13:52:24,501 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 14:52:30] 2025-12-02 13:52:25,613 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-12-02 14:52:30] 2025-12-02 13:52:26,168 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 14:52:30] 2025-12-02 13:52:26,168 | INFO     | [monitor] control thread has ended
[2025-12-02 14:52:30] 2025-12-02 13:52:30,639 | INFO     | all workflow threads have been joined
[2025-12-02 14:52:30] 2025-12-02 13:52:30,639 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 14:52:30] 2025-12-02 13:52:30,639 | INFO     | traces error code: 0
[2025-12-02 14:52:30] 2025-12-02 13:52:30,639 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 14:52:30] 2025-12-02 13:52:30,690 [wrapper] ==== pilot stdout END ====
[2025-12-02 14:52:30] 2025-12-02 13:52:30,691 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 14:52:30] 2025-12-02 13:52:30,692 [wrapper] pilotpid: 12672
[2025-12-02 14:52:30] 2025-12-02 13:52:30,693 [wrapper] Pilot exit status: 0
[2025-12-02 14:52:30] 2025-12-02 13:52:30,697 [wrapper] pandaids: 6904565240
[2025-12-02 14:52:30] 2025-12-02 13:52:30,715 [wrapper] cleanup supervisor_pilot 22620 12673
[2025-12-02 14:52:30] 2025-12-02 13:52:30,716 [wrapper] Test setup, not cleaning
[2025-12-02 14:52:30] 2025-12-02 13:52:30,717 [wrapper] apfmon messages muted
[2025-12-02 14:52:30] 2025-12-02 13:52:30,718 [wrapper] ==== wrapper stdout END ====
[2025-12-02 14:52:30] 2025-12-02 13:52:30,719 [wrapper] ==== wrapper stderr END ====
[2025-12-02 14:52:30]  *** Error codes and diagnostics ***
[2025-12-02 14:52:30]     "exeErrorCode": 0,
[2025-12-02 14:52:30]     "exeErrorDiag": "",
[2025-12-02 14:52:30]     "pilotErrorCode": 0,
[2025-12-02 14:52:30]     "pilotErrorDiag": "",
[2025-12-02 14:52:30]  *** Listing of results directory ***
[2025-12-02 14:52:30] total 600668
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-02 14:52:30] -rwx------ 1 mf493845 unix-user     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user      5112 Nov 29 10:25 queuedata.json
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user       100 Dec  2 12:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 14:52:30] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 12:13 run_atlas
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user       105 Dec  2 12:13 job.xml
[2025-12-02 14:52:30] -rw-r--r-- 2 mf493845 unix-user 306069958 Dec  2 13:31 EVNT.47523841._000001.pool.root.1
[2025-12-02 14:52:30] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 13:31 start_atlas.sh
[2025-12-02 14:52:30] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 13:31 shared
[2025-12-02 14:52:30] -rw-r--r-- 2 mf493845 unix-user    589955 Dec  2 13:31 input.tar.gz
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user      6390 Dec  2 13:31 init_data.xml
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user         0 Dec  2 13:31 boinc_setup_complete
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user      8192 Dec  2 13:31 boinc_mmap_file
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user         0 Dec  2 13:31 boinc_lockfile
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user      2613 Dec  2 13:31 pandaJob.out
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user    986791 Dec  2 13:31 agis_schedconf.cvmfs.json
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user   1516240 Dec  2 13:31 agis_ddmendpoints.agis.ALL.json
[2025-12-02 14:52:30] drwx------ 5 mf493845 unix-user       440 Dec  2 13:31 pilot3
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user 303049125 Dec  2 14:51 HITS.47523845._000128.pool.root.1
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user      1010 Dec  2 14:52 memory_monitor_summary.json
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user    315297 Dec  2 14:52 log.47523845._000128.job.log.tgz.1
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user        95 Dec  2 14:52 pilot_heartbeat.json
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user      7746 Dec  2 14:52 heartbeat.json
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user      4638 Dec  2 14:52 pilotlog.txt
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user    726441 Dec  2 14:52 log.47523845._000128.job.log.1
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user       357 Dec  2 14:52 output.list
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user       620 Dec  2 14:52 runtime_log
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user   1064960 Dec  2 14:52 result.tar.gz
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user      9220 Dec  2 14:52 runtime_log.err
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user       638 Dec  2 14:52 qJcLDmkKWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmm7OKDmZ3dA6n.diag
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user     22722 Dec  2 14:52 stderr.txt
[2025-12-02 14:52:30] HITS file was successfully produced:
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user 303049125 Dec  2 14:51 shared/HITS.pool.root.1
[2025-12-02 14:52:30]  *** Contents of shared directory: ***
[2025-12-02 14:52:30] total 596484
[2025-12-02 14:52:30] -rw-r--r-- 2 mf493845 unix-user 306069958 Dec  2 13:31 ATLAS.root_0
[2025-12-02 14:52:30] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 13:31 start_atlas.sh
[2025-12-02 14:52:30] -rw-r--r-- 2 mf493845 unix-user    589955 Dec  2 13:31 input.tar.gz
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user 303049125 Dec  2 14:51 HITS.pool.root.1
[2025-12-02 14:52:30] -rw------- 1 mf493845 unix-user   1064960 Dec  2 14:52 result.tar.gz
14:52:32 (7829): run_atlas exited; CPU time 35832.790631
14:52:32 (7829): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN