Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
14:43:02 (17736): wrapper (7.7.26015): starting
14:43:02 (17736): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 14:43:02] Arguments: --nthreads 8
[2025-12-02 14:43:02] Threads: 8
[2025-12-02 14:43:02] Checking for CVMFS
[2025-12-02 14:43:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 14:43:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 14:43:02] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 14:43:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 14:43:02] 2.11.0.0 8643 74268 126428 153550 3 242 2104348 4096001 3941 130560 0 9161666 99.680 4995138 517 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 14:43:02] CVMFS is ok
[2025-12-02 14:43:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 14:43:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 14:43:02] Further information can be found at the LHC@home message board.
[2025-12-02 14:43:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 14:43:02] Checking for apptainer binary...
[2025-12-02 14:43:02] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 14:43:02] apptainer is not installed, using version from CVMFS
[2025-12-02 14:43:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 14:43:02] WARNING: Environment variable TMPDIR already has value [/tmp/job_10943624/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node013
[2025-12-02 14:43:02] apptainer works
[2025-12-02 14:43:02] Set ATHENA_PROC_NUMBER=8
[2025-12-02 14:43:02] Set ATHENA_CORE_NUMBER=8
[2025-12-02 14:43:02] Starting ATLAS job with PandaID=6901292137
[2025-12-02 14:43:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10943624/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 18:31:37]  *** The last 200 lines of the pilot log: ***
[2025-12-02 18:31:37] 2025-12-02 17:30:34,682 | INFO     | .. there are 5 such processes running
[2025-12-02 18:31:37] 2025-12-02 17:30:34,818 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 18:31:37] 2025-12-02 17:30:34,822 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2567.07803125
[2025-12-02 18:31:37] 2025-12-02 17:30:34,827 | INFO     | using path: /tmp/job_10943624/atlas/pilot/slots/0/PanDA_Pilot-6901292137/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 18:31:37] 2025-12-02 17:30:34,827 | INFO     | extracted standard info from prmon json
[2025-12-02 18:31:37] 2025-12-02 17:30:34,827 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 18:31:37] 2025-12-02 17:30:34,827 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 18:31:37] 2025-12-02 17:30:34,829 | INFO     | fitting pss+swap vs Time
[2025-12-02 18:31:37] 2025-12-02 17:30:34,830 | INFO     | sum of square deviations: 3485088600.0
[2025-12-02 18:31:37] 2025-12-02 17:30:34,830 | INFO     | sum of deviations: 84304873435.5
[2025-12-02 18:31:37] 2025-12-02 17:30:34,830 | INFO     | mean x: 1764689808.5
[2025-12-02 18:31:37] 2025-12-02 17:30:34,830 | INFO     | mean y: 3371953.4241071427
[2025-12-02 18:31:37] 2025-12-02 17:30:34,830 | INFO     | intersect: -42684768301.750244
[2025-12-02 18:31:37] 2025-12-02 17:30:34,831 | INFO     | chi2: 3.6505167392500213
[2025-12-02 18:31:37] 2025-12-02 17:30:34,831 | INFO     | sum of square deviations: 3256879670.0
[2025-12-02 18:31:37] 2025-12-02 17:30:34,831 | INFO     | sum of deviations: 142458002551.0
[2025-12-02 18:31:37] 2025-12-02 17:30:34,831 | INFO     | mean x: 1764689656.0
[2025-12-02 18:31:37] 2025-12-02 17:30:34,832 | INFO     | mean y: 3410586.5479452056
[2025-12-02 18:31:37] 2025-12-02 17:30:34,832 | INFO     | intersect: -77185245117.20157
[2025-12-02 18:31:37] 2025-12-02 17:30:34,832 | INFO     | chi2: 1.897261761767915
[2025-12-02 18:31:37] 2025-12-02 17:30:34,832 | INFO     | current chi2=1.897261761767915 (change=48.0275835645751 %)
[2025-12-02 18:31:37] 2025-12-02 17:30:34,832 | INFO     | sum of square deviations: 3038856977.5
[2025-12-02 18:31:37] 2025-12-02 17:30:34,833 | INFO     | sum of deviations: 136841466926.5
[2025-12-02 18:31:37] 2025-12-02 17:30:34,833 | INFO     | mean x: 1764689503.5
[2025-12-02 18:31:37] 2025-12-02 17:30:34,833 | INFO     | mean y: 3406658.64953271
[2025-12-02 18:31:37] 2025-12-02 17:30:34,833 | INFO     | intersect: -79461570507.66628
[2025-12-02 18:31:37] 2025-12-02 17:30:34,833 | INFO     | chi2: 1.8961187429102684
[2025-12-02 18:31:37] 2025-12-02 17:30:34,833 | INFO     | current chi2=1.8961187429102684 (change=0.06024571204036593 %)
[2025-12-02 18:31:37] 2025-12-02 17:30:34,833 | INFO     | right removable region: 213
[2025-12-02 18:31:37] 2025-12-02 17:30:34,833 | INFO     | sum of square deviations: 3256879670.0
[2025-12-02 18:31:37] 2025-12-02 17:30:34,834 | INFO     | sum of deviations: 25441264631.999992
[2025-12-02 18:31:37] 2025-12-02 17:30:34,834 | INFO     | mean x: 1764689961.0
[2025-12-02 18:31:37] 2025-12-02 17:30:34,834 | INFO     | mean y: 3410969.7808219176
[2025-12-02 18:31:37] 2025-12-02 17:30:34,834 | INFO     | intersect: -13781545442.574057
[2025-12-02 18:31:37] 2025-12-02 17:30:34,834 | INFO     | chi2: 1.8212168310616264
[2025-12-02 18:31:37] 2025-12-02 17:30:34,834 | INFO     | current chi2=1.8212168310616264 (change=50.110711410248584 %)
[2025-12-02 18:31:37] 2025-12-02 17:30:34,834 | INFO     | sum of square deviations: 3038856977.5
[2025-12-02 18:31:37] 2025-12-02 17:30:34,835 | INFO     | sum of deviations: 15428764495.5
[2025-12-02 18:31:37] 2025-12-02 17:30:34,835 | INFO     | mean x: 1764690113.5
[2025-12-02 18:31:37] 2025-12-02 17:30:34,835 | INFO     | mean y: 3417961.976635514
[2025-12-02 18:31:37] 2025-12-02 17:30:34,835 | INFO     | intersect: -8956196909.772842
[2025-12-02 18:31:37] 2025-12-02 17:30:34,835 | INFO     | chi2: 1.8020725478726962
[2025-12-02 18:31:37] 2025-12-02 17:30:34,835 | INFO     | current chi2=1.8020725478726962 (change=1.0511808842536625 %)
[2025-12-02 18:31:37] 2025-12-02 17:30:34,835 | INFO     | left removable region: 20
[2025-12-02 18:31:37] 2025-12-02 17:30:34,835 | INFO     | sum of square deviations: 2229146912.0
[2025-12-02 18:31:37] 2025-12-02 17:30:34,836 | INFO     | sum of deviations: 52565852201.99999
[2025-12-02 18:31:37] 2025-12-02 17:30:34,836 | INFO     | mean x: 1764690083.0
[2025-12-02 18:31:37] 2025-12-02 17:30:34,836 | INFO     | mean y: 3468955.678756477
[2025-12-02 18:31:37] 2025-12-02 17:30:34,836 | INFO     | intersect: -41609956155.9422
[2025-12-02 18:31:37] 2025-12-02 17:30:34,836 | INFO     | chi2: 0.009192991275889847
[2025-12-02 18:31:37] 2025-12-02 17:30:34,836 | INFO     | current memory leak: 23.58 B/s (using 193 data points, chi2=0.01)
[2025-12-02 18:31:37] 2025-12-02 17:30:34,837 | INFO     | could have reported an average CPU frequency of 2999 MHz (11 samples)
[2025-12-02 18:31:37] 2025-12-02 17:30:34,837 | INFO     | ..............................
[2025-12-02 18:31:37] 2025-12-02 17:30:34,837 | INFO     | . Timing measurements:
[2025-12-02 18:31:37] 2025-12-02 17:30:34,837 | INFO     | . get job = 0 s
[2025-12-02 18:31:37] 2025-12-02 17:30:34,837 | INFO     | . initial setup = 1 s
[2025-12-02 18:31:37] 2025-12-02 17:30:34,837 | INFO     | . payload setup = 4 s
[2025-12-02 18:31:37] 2025-12-02 17:30:34,837 | INFO     | . stage-in = 0 s
[2025-12-02 18:31:37] 2025-12-02 17:30:34,837 | INFO     | . payload execution = 13620 s
[2025-12-02 18:31:37] 2025-12-02 17:30:34,837 | INFO     | . stage-out = 1 s
[2025-12-02 18:31:37] 2025-12-02 17:30:34,837 | INFO     | . log creation = 0 s
[2025-12-02 18:31:37] 2025-12-02 17:30:34,837 | INFO     | ..............................
[2025-12-02 18:31:37] 2025-12-02 17:30:34,885 | INFO     | 
[2025-12-02 18:31:37] 2025-12-02 17:30:34,885 | INFO     | job summary report
[2025-12-02 18:31:37] 2025-12-02 17:30:34,885 | INFO     | --------------------------------------------------
[2025-12-02 18:31:37] 2025-12-02 17:30:34,885 | INFO     | PanDA job id: 6901292137
[2025-12-02 18:31:37] 2025-12-02 17:30:34,885 | INFO     | task id: 47531058
[2025-12-02 18:31:37] 2025-12-02 17:30:34,885 | INFO     | errors: (none)
[2025-12-02 18:31:37] 2025-12-02 17:30:34,885 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | pilot state: finished 
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | transexitcode: 0
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | exeerrorcode: 0
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | exeerrordiag: 
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | exitcode: 0
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | exitmsg: OK
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | cpuconsumptiontime: 102828 s
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | nevents: 1000
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | neventsw: 0
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | pid: 29533
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | pgrp: 29533
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | corecount: 8
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | event service: False
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | sizes: {0: 2284241, 1: 2284607, 3: 2284869, 11: 2284897, 13628: 2334909, 13630: 2343933, 13632: 2344117, 13635: 2344363}
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | --------------------------------------------------
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | 
[2025-12-02 18:31:37] 2025-12-02 17:30:34,886 | INFO     | executing command: ls -lF /tmp/job_10943624/atlas/pilot/slots/0
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 18:31:37] 2025-12-02 17:30:34,897 | INFO     | job 6901292137 has completed (purged errors)
[2025-12-02 18:31:37] 2025-12-02 17:30:34,898 | INFO     | overall cleanup function is called
[2025-12-02 18:31:37] 2025-12-02 17:30:35,905 | INFO     | --- collectZombieJob: --- 10, [29533]
[2025-12-02 18:31:37] 2025-12-02 17:30:35,905 | INFO     | zombie collector waiting for pid 29533
[2025-12-02 18:31:37] 2025-12-02 17:30:35,906 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 18:31:37] 2025-12-02 17:30:35,906 | INFO     | collected zombie processes
[2025-12-02 18:31:37] 2025-12-02 17:30:35,906 | INFO     | will attempt to kill all subprocesses of pid=29533
[2025-12-02 18:31:37] 2025-12-02 17:30:36,016 | INFO     | process IDs to be killed: [29533] (in reverse order)
[2025-12-02 18:31:37] 2025-12-02 17:30:36,060 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 18:31:37] 2025-12-02 17:30:36,060 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 18:31:37] 2025-12-02 17:30:36,065 | INFO     | did not find any defunct processes belonging to 29533
[2025-12-02 18:31:37] 2025-12-02 17:30:36,068 | INFO     | did not find any defunct processes belonging to 29533
[2025-12-02 18:31:37] 2025-12-02 17:30:36,069 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 18:31:37] 2025-12-02 17:30:36,069 | INFO     | ready for new job
[2025-12-02 18:31:37] 2025-12-02 17:30:36,069 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 18:31:37] 2025-12-02 17:30:36,070 | INFO     | ***************************************
[2025-12-02 18:31:37] 2025-12-02 17:30:36,070 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 18:31:37] 2025-12-02 17:30:36,070 | INFO     | ***************************************
[2025-12-02 18:31:37] 2025-12-02 17:30:36,070 | INFO     | 
[2025-12-02 18:31:37] 2025-12-02 17:30:36,083 | INFO     | architecture information:
[2025-12-02 18:31:37] 2025-12-02 17:30:36,083 | INFO     | executing command: cat /etc/os-release
[2025-12-02 18:31:37] 2025-12-02 17:30:36,089 | INFO     | cat /etc/os-release:
[2025-12-02 18:31:37] NAME="CentOS Linux"
[2025-12-02 18:31:37] VERSION="7 (Core)"
[2025-12-02 18:31:37] ID="centos"
[2025-12-02 18:31:37] ID_LIKE="rhel fedora"
[2025-12-02 18:31:37] VERSION_ID="7"
[2025-12-02 18:31:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 18:31:37] ANSI_COLOR="0;31"
[2025-12-02 18:31:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 18:31:37] HOME_URL="https://www.centos.org/"
[2025-12-02 18:31:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 18:31:37] 
[2025-12-02 18:31:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 18:31:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 18:31:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 18:31:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 18:31:37] 
[2025-12-02 18:31:37] 2025-12-02 17:30:36,089 | INFO     | ***************************************
[2025-12-02 18:31:37] 2025-12-02 17:30:36,592 | INFO     | executing command: df -mP /tmp/job_10943624/atlas/pilot/slots/0
[2025-12-02 18:31:37] 2025-12-02 17:30:36,599 | INFO     | sufficient remaining disk space (221906993152 B)
[2025-12-02 18:31:37] 2025-12-02 17:30:36,599 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 18:31:37] 2025-12-02 17:30:36,600 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 18:31:37] 2025-12-02 17:30:36,600 | INFO     | update_server=False
[2025-12-02 18:31:37] 2025-12-02 17:30:36,600 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 18:31:37] 2025-12-02 17:30:36,600 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 18:31:37] 2025-12-02 17:30:36,789 | INFO     | all data control threads have been joined
[2025-12-02 18:31:37] 2025-12-02 17:30:36,947 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 18:31:37] 2025-12-02 17:30:36,947 | INFO     | aborting loop
[2025-12-02 18:31:37] 2025-12-02 17:30:36,964 | INFO     | all job control threads have been joined
[2025-12-02 18:31:37] 2025-12-02 17:30:37,605 | INFO     | [job] retrieve thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:37,605 | INFO     | [job] queue monitor thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:37,632 | INFO     | [data] copytool_in thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:37,699 | INFO     | [payload] validate_post thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:37,794 | INFO     | [data] control thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:37,820 | INFO     | all payload control threads have been joined
[2025-12-02 18:31:37] 2025-12-02 17:30:37,855 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 18:31:37] 2025-12-02 17:30:37,952 | INFO     | [job] job monitor thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:37,969 | INFO     | [job] control thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:38,166 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:38,410 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:38,590 | INFO     | [job] validate thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:38,627 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 18:31:37] 2025-12-02 17:30:38,825 | INFO     | [payload] control thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:38,899 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:38,962 | INFO     | [payload] failed_post thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:39,860 | INFO     | [data] copytool_out thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:42,632 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:30:47,422 | INFO     | job.realtimelogging is not enabled
[2025-12-02 18:31:37] 2025-12-02 17:30:48,427 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 18:31:37] 2025-12-02 17:31:05,737 | INFO     | 13649s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-02 18:31:37] 2025-12-02 17:31:06,880 | INFO     | PID=22069 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 18:31:37] 2025-12-02 17:31:06,881 | INFO     | .. there are 5 such processes running
[2025-12-02 18:31:37] 2025-12-02 17:31:06,881 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 18:31:37] 2025-12-02 17:31:06,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 18:31:37] 2025-12-02 17:31:06,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 18:31:37] 2025-12-02 17:31:30,015 | INFO     | [monitor] cgroup control has ended
[2025-12-02 18:31:37] 2025-12-02 17:31:32,055 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058717952)>']
[2025-12-02 18:31:37] 2025-12-02 17:31:33,012 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 18:31:37] 2025-12-02 17:31:33,012 | INFO     | [monitor] control thread has ended
[2025-12-02 18:31:37] 2025-12-02 17:31:37,081 | INFO     | all workflow threads have been joined
[2025-12-02 18:31:37] 2025-12-02 17:31:37,081 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 18:31:37] 2025-12-02 17:31:37,081 | INFO     | traces error code: 0
[2025-12-02 18:31:37] 2025-12-02 17:31:37,081 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 18:31:37] 2025-12-02 17:31:37,133 [wrapper] ==== pilot stdout END ====
[2025-12-02 18:31:37] 2025-12-02 17:31:37,135 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 18:31:37] 2025-12-02 17:31:37,136 [wrapper] pilotpid: 22069
[2025-12-02 18:31:37] 2025-12-02 17:31:37,137 [wrapper] Pilot exit status: 0
[2025-12-02 18:31:37] 2025-12-02 17:31:37,141 [wrapper] pandaids: 6901292137
[2025-12-02 18:31:37] 2025-12-02 17:31:37,165 [wrapper] cleanup supervisor_pilot  3079 22070
[2025-12-02 18:31:37] 2025-12-02 17:31:37,167 [wrapper] Test setup, not cleaning
[2025-12-02 18:31:37] 2025-12-02 17:31:37,168 [wrapper] apfmon messages muted
[2025-12-02 18:31:37] 2025-12-02 17:31:37,168 [wrapper] ==== wrapper stdout END ====
[2025-12-02 18:31:37] 2025-12-02 17:31:37,169 [wrapper] ==== wrapper stderr END ====
[2025-12-02 18:31:37]  *** Error codes and diagnostics ***
[2025-12-02 18:31:37]     "exeErrorCode": 0,
[2025-12-02 18:31:37]     "exeErrorDiag": "",
[2025-12-02 18:31:37]     "pilotErrorCode": 0,
[2025-12-02 18:31:37]     "pilotErrorDiag": "",
[2025-12-02 18:31:37]  *** Listing of results directory ***
[2025-12-02 18:31:37] total 1064080
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-02 18:31:37] -rwx------ 1 mf493845 unix-user     36292 Nov 29 10:20 runpilot2-wrapper.sh
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user      5112 Nov 29 10:22 queuedata.json
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user       100 Dec  2 13:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 18:31:37] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  2 13:06 run_atlas
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user       105 Dec  2 13:06 job.xml
[2025-12-02 18:31:37] -rw-r--r-- 2 mf493845 unix-user 378517920 Dec  2 14:43 EVNT.47531050._000608.pool.root.1
[2025-12-02 18:31:37] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 14:43 start_atlas.sh
[2025-12-02 18:31:37] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 14:43 shared
[2025-12-02 18:31:37] -rw-r--r-- 2 mf493845 unix-user    590122 Dec  2 14:43 input.tar.gz
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user      6391 Dec  2 14:43 init_data.xml
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user         0 Dec  2 14:43 boinc_setup_complete
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user      8192 Dec  2 14:43 boinc_mmap_file
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user         0 Dec  2 14:43 boinc_lockfile
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user      2880 Dec  2 14:43 pandaJob.out
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user    986791 Dec  2 14:43 agis_schedconf.cvmfs.json
[2025-12-02 18:31:37] drwx------ 5 mf493845 unix-user       440 Dec  2 14:43 pilot3
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user 699932266 Dec  2 18:30 HITS.47531058._002239.pool.root.1
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user      1031 Dec  2 18:30 memory_monitor_summary.json
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user   1516240 Dec  2 18:30 agis_ddmendpoints.agis.ALL.json
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user   1626099 Dec  2 18:30 log.47531058._002239.job.log.tgz.1
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user        95 Dec  2 18:30 pilot_heartbeat.json
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user     27496 Dec  2 18:30 heartbeat.json
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user      5023 Dec  2 18:31 pilotlog.txt
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user   1999967 Dec  2 18:31 log.47531058._002239.job.log.1
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user       353 Dec  2 18:31 output.list
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user       620 Dec  2 18:31 runtime_log
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user   3665920 Dec  2 18:31 result.tar.gz
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user       649 Dec  2 18:31 YqZMDmjIWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmp4OKDm4bGXxm.diag
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user      9221 Dec  2 18:31 runtime_log.err
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user     21664 Dec  2 18:31 stderr.txt
[2025-12-02 18:31:37] HITS file was successfully produced:
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user 699932266 Dec  2 18:30 shared/HITS.pool.root.1
[2025-12-02 18:31:37]  *** Contents of shared directory: ***
[2025-12-02 18:31:37] total 1057352
[2025-12-02 18:31:37] -rw-r--r-- 2 mf493845 unix-user 378517920 Dec  2 14:43 ATLAS.root_0
[2025-12-02 18:31:37] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 14:43 start_atlas.sh
[2025-12-02 18:31:37] -rw-r--r-- 2 mf493845 unix-user    590122 Dec  2 14:43 input.tar.gz
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user 699932266 Dec  2 18:30 HITS.pool.root.1
[2025-12-02 18:31:37] -rw------- 1 mf493845 unix-user   3665920 Dec  2 18:31 result.tar.gz
18:31:38 (17736): run_atlas exited; CPU time 102991.024387
18:31:38 (17736): called boinc_finish(0)

</stderr_txt>
]]>

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